| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G10695 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.8 x 10-20 | 1340 | 213 | 327 | 606 | 86.28% | 64.95% | 1553 | 933 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '17705.8' Avg. expression score in LCM sample: '384.571' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10695 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 1976 | 331 | 529 | 2301 | 85.65% | 81.31% | 2307 | 2830 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '13778.4' Avg. expression score in LCM sample: '384.571' Tissue used: 'full endosperm' |
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| AT5G10695 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.88 x 10-4 | 97 | 35 | 17 | 25 | 73.48% | 59.52% | 132 | 42 | TAIR8 |
Avg. embryo expression (dissected): '2492.94' Avg. embryo expression (LCM): '90.0199' |
||||
| AT5G10695 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.963 x 10-3 | 896 | 152 | 85.50% | 1048 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10695 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.61159 x 10-1 | 1017 | 255 | 79.95% | 1272 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10695 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 3210 | 345 | 90.30% | 3555 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 21 | 14 | 5 | 21 | 60.00% | 80.77% | 35 | 26 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.903827' Avg. expression score for this sample: '50.2025' Avg. expression score in LCM sample: '23.9723' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 19 | 20 | 11 | 44 | 48.72% | 80.00% | 39 | 55 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.903827' Avg. expression score for this sample: '50.2211' Avg. expression score in LCM sample: '23.9723' Tissue used: 'full endosperm' |
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| AT5G10690 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.6992 x 10-2 | 37 | 67 | 5 | 8 | 35.58% | 61.54% | 104 | 13 | TAIR8 |
Avg. embryo expression (dissected): '135.292' Avg. embryo expression (LCM): '101.737' |
||||
| AT5G10690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.78387 x 10-1 | 5 | 4 | 55.56% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.04919 x 10-1 | 25 | 14 | 64.10% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10690 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.34294 x 10-1 | 20 | 11 | 64.52% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.5406 x 10-2 | 6 | 10 | 9 | 3 | 37.50% | 25.00% | 16 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '35.9751' Avg. expression score in LCM sample: '12.1699' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.82509 x 10-1 | 49 | 7 | 20 | 32 | 87.50% | 61.54% | 56 | 52 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '80.4015' Avg. expression score in LCM sample: '12.1699' Tissue used: 'full endosperm' |
|||||
| AT5G10680 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 12 | 12 | 3 | 1 | 50.00% | 25.00% | 24 | 4 | TAIR8 |
Avg. embryo expression (dissected): '71.8958' Avg. embryo expression (LCM): '25.9837' |
||||
| AT5G10680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.0 x 10-5 | 2 | 15 | 11.76% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.9 x 10-8 | 52 | 0 | 100.00% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10680 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.914 x 10-3 | 14 | 22 | 38.89% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.13649 x 10-1 | 0 | 6 | 1 | 5 | 0.00% | 83.33% | 6 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '10.4315' Avg. expression score in LCM sample: '6.23192' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.38433 x 10-1 | 8 | 0 | 3 | 6 | 100.00% | 66.67% | 8 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '10.1959' Avg. expression score in LCM sample: '6.23192' Tissue used: 'full endosperm' |
|||||
| AT5G10660 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 2 | 0 | 0 | 33.33% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.39731' Avg. embryo expression (LCM): '0' |
|||||
| AT5G10660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.2461 x 10-2 | 2300 | 575 | 80.00% | 2875 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10660 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.412 x 10-2 | 180 | 193 | 48.26% | 373 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.64734 x 10-1 | 9 | 1 | 0 | 4 | 90.00% | 100.00% | 10 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-08' Avg. expression score for this sample: '29.855' Avg. expression score in LCM sample: '12.9783' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.0 x 10-8 | 43 | 1 | 7 | 75 | 97.73% | 91.46% | 44 | 82 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-08' Avg. expression score for this sample: '103.247' Avg. expression score in LCM sample: '12.9783' Tissue used: 'full endosperm' |
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| AT5G10650 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '7.38235' Avg. embryo expression (LCM): '5.22437' |
|||||
| AT5G10650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 27 | 1 | 96.43% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.90014 x 10-1 | 52 | 1 | 98.11% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10650 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.614 x 10-3 | 186 | 1 | 99.47% | 187 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.45025 x 10-1 | 26 | 42 | 9 | 50 | 38.24% | 84.75% | 68 | 59 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.649399' Avg. expression score for this sample: '45.022' Avg. expression score in LCM sample: '30.4394' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.59817 x 10-1 | 94 | 51 | 70 | 197 | 64.83% | 73.78% | 145 | 267 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.649399' Avg. expression score for this sample: '60.2902' Avg. expression score in LCM sample: '30.4394' Tissue used: 'full endosperm' |
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| AT5G10630 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.27104 x 10-1 | 33 | 60 | 15 | 17 | 35.48% | 53.12% | 93 | 32 | TAIR8 |
Avg. embryo expression (dissected): '54.7474' Avg. embryo expression (LCM): '60.884' |
||||
| AT5G10630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.55011 x 10-1 | 31 | 8 | 79.49% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.4 x 10-6 | 266 | 58 | 82.10% | 324 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10630 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.61495 x 10-1 | 182 | 75 | 70.82% | 257 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10625 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.515927' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10625 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.728081' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G10625 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.292075' Avg. embryo expression (LCM): '0' |
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| AT5G10625 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G10625 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G10625 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.96899 x 10-1 | 28 | 16 | 12 | 52 | 63.64% | 81.25% | 44 | 64 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.651684' Avg. expression score for this sample: '54.5674' Avg. expression score in LCM sample: '2.04301' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.28647 x 10-1 | 15 | 12 | 15 | 31 | 55.56% | 67.39% | 27 | 46 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.651684' Avg. expression score for this sample: '36.5203' Avg. expression score in LCM sample: '2.04301' Tissue used: 'full endosperm' |
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| AT5G10620 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.95177 x 10-1 | 55 | 44 | 16 | 20 | 55.56% | 55.56% | 99 | 36 | TAIR8 |
Avg. embryo expression (dissected): '124.26' Avg. embryo expression (LCM): '64.4506' |
||||
| AT5G10620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.201 x 10-3 | 3 | 10 | 23.08% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.044 x 10-3 | 18 | 0 | 100.00% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10620 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.1821 x 10-2 | 48 | 10 | 82.76% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10610 | CYP81K1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.22 x 10-4 | 1222 | 100 | 499 | 325 | 92.44% | 39.44% | 1322 | 824 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '388.548' Avg. expression score in LCM sample: '105.443' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10610 | CYP81K1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 2114 | 130 | 461 | 863 | 94.21% | 65.18% | 2244 | 1324 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '479.22' Avg. expression score in LCM sample: '105.443' Tissue used: 'full endosperm' |
||||
| AT5G10610 | CYP81K1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.3 x 10-7 | 483 | 124 | 239 | 99 | 79.57% | 29.29% | 607 | 338 | TAIR8 |
Avg. embryo expression (dissected): '293.462' Avg. embryo expression (LCM): '114.949' |
|||
| AT5G10610 | CYP81K1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.84305 x 10-1 | 277 | 67 | 80.52% | 344 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G10610 | CYP81K1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.721 x 10-3 | 1857 | 586 | 76.01% | 2443 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G10610 | CYP81K1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 4656 | 187 | 96.14% | 4843 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G10600 | CYP81K2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.67357 x 10-1 | 25 | 19 | 16 | 39 | 56.82% | 70.91% | 44 | 55 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.130713' Avg. expression score for this sample: '29.5105' Avg. expression score in LCM sample: '50.2669' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10600 | CYP81K2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.7442 x 10-2 | 100 | 30 | 17 | 53 | 76.92% | 75.71% | 130 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.130713' Avg. expression score for this sample: '39.406' Avg. expression score in LCM sample: '50.2669' Tissue used: 'full endosperm' |
||||
| AT5G10600 | CYP81K2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.69 x 10-3 | 63 | 20 | 18 | 19 | 75.90% | 51.35% | 83 | 37 | TAIR8 |
Avg. embryo expression (dissected): '62.7913' Avg. embryo expression (LCM): '23.8613' |
|||
| AT5G10600 | CYP81K2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.29495 x 10-1 | 23 | 7 | 76.67% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G10600 | CYP81K2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.8 x 10-5 | 255 | 182 | 58.35% | 437 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G10600 | CYP81K2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.7 x 10-5 | 233 | 36 | 86.62% | 269 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G10590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.14489' Avg. expression score in LCM sample: '12.1993' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.69348' Avg. expression score in LCM sample: '12.1993' Tissue used: 'full endosperm' |
||||||
| AT5G10590 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '6.70291' Avg. embryo expression (LCM): '0' |
|||||
| AT5G10590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G10590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10590 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.27398 x 10-1 | 22 | 9 | 11 | 6 | 70.97% | 35.29% | 31 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.591921' Avg. expression score for this sample: '50.3245' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.77366 x 10-1 | 183 | 96 | 58 | 109 | 65.59% | 65.27% | 279 | 167 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.591921' Avg. expression score for this sample: '225.838' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G10580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.25054 x 10-1 | 158 | 236 | 79 | 103 | 40.10% | 56.59% | 394 | 182 | TAIR8 |
Avg. embryo expression (dissected): '890.674' Avg. embryo expression (LCM): '182.978' |
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| AT5G10580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.585 x 10-3 | 2 | 8 | 20.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.6 x 10-20 | 153 | 4 | 97.45% | 157 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1782 | 5 | 99.72% | 1787 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10572 | SNOR77 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '13.7217' Avg. expression score in LCM sample: '11.141' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10572 | SNOR77 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '49.2627' Avg. expression score in LCM sample: '11.141' Tissue used: 'full endosperm' |
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| AT5G10572 | SNOR77 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '65.5882' Avg. embryo expression (LCM): '285.419' |
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| AT5G10572 | SNOR77 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10572 | SNOR77 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10572 | SNOR77 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.726386' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.64235' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G10570 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '14.2417' Avg. embryo expression (LCM): '4.74714' |
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| AT5G10570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G10570 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G10560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.95325 x 10-1 | 43 | 17 | 30 | 41 | 71.67% | 57.75% | 60 | 71 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.946035' Avg. expression score for this sample: '107.015' Avg. expression score in LCM sample: '61.937' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.91828 x 10-1 | 132 | 39 | 76 | 115 | 77.19% | 60.21% | 171 | 191 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.946035' Avg. expression score for this sample: '158.672' Avg. expression score in LCM sample: '61.937' Tissue used: 'full endosperm' |
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| AT5G10560 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.68855 x 10-1 | 82 | 70 | 21 | 28 | 53.95% | 57.14% | 152 | 49 | TAIR8 |
Avg. embryo expression (dissected): '231.45' Avg. embryo expression (LCM): '169.453' |
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| AT5G10560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 20 | 10 | 66.67% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.03 x 10-4 | 56 | 8 | 87.50% | 64 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10560 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.0 x 10-10 | 115 | 8 | 93.50% | 123 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10550 | GTE2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '32713.4' Avg. expression score in LCM sample: '9782.87' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10550 | GTE2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '26257' Avg. expression score in LCM sample: '9782.87' Tissue used: 'full endosperm' |
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| AT5G10550 | GTE2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '32744.2' Avg. embryo expression (LCM): '11020.4' |
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| AT5G10550 | GTE2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10550 | GTE2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10550 | GTE2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G10540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.72044 x 10-1 | 39 | 4 | 10 | 14 | 90.70% | 58.33% | 43 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.095085' Avg. expression score for this sample: '21145.9' Avg. expression score in LCM sample: '6131.78' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G10540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.61859 x 10-1 | 74 | 21 | 30 | 56 | 77.89% | 65.12% | 95 | 86 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.095085' Avg. expression score for this sample: '43271.4' Avg. expression score in LCM sample: '6131.78' Tissue used: 'full endosperm' |
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| AT5G10540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.5851 x 10-2 | 28 | 9 | 6 | 4 | 75.68% | 40.00% | 37 | 10 | TAIR8 |
Avg. embryo expression (dissected): '22156.2' Avg. embryo expression (LCM): '13461.2' |
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| AT5G10540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.633 x 10-3 | 10 | 13 | 43.48% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |