| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G11600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 12 | 3 | 5 | 6 | 80.00% | 54.55% | 15 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.635098' Avg. expression score for this sample: '40.2197' Avg. expression score in LCM sample: '9.09801' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G11600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.07986 x 10-1 | 18 | 4 | 15 | 30 | 81.82% | 66.67% | 22 | 45 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.635098' Avg. expression score for this sample: '75.9895' Avg. expression score in LCM sample: '9.09801' Tissue used: 'full endosperm' |
|||||
| AT5G11600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.92933' Avg. embryo expression (LCM): '0' |
|||||
| AT5G11600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.8265 x 10-2 | 25 | 3 | 89.29% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.8 x 10-5 | 57 | 2 | 96.61% | 59 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11590 | TINY2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G11590 | TINY2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 3 | 0 | 0 | 0 | 100.00% | 3 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.455356' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT5G11590 | TINY2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.93027 x 10-1 | 1 | 7 | 2 | 1 | 12.50% | 33.33% | 8 | 3 | TAIR8 |
Avg. embryo expression (dissected): '4.0656' Avg. embryo expression (LCM): '2.10984' |
|||
| AT5G11590 | TINY2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11590 | TINY2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11590 | TINY2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.30562 x 10-1 | 288 | 161 | 94 | 253 | 64.14% | 72.91% | 449 | 347 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000534' Avg. expression score for this sample: '548.145' Avg. expression score in LCM sample: '197.07' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G11580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.6 x 10-5 | 413 | 183 | 187 | 616 | 69.30% | 76.71% | 596 | 803 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000534' Avg. expression score for this sample: '454.148' Avg. expression score in LCM sample: '197.07' Tissue used: 'full endosperm' |
|||||
| AT5G11580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.69059 x 10-1 | 234 | 226 | 58 | 62 | 50.87% | 51.67% | 460 | 120 | TAIR8 |
Avg. embryo expression (dissected): '490.661' Avg. embryo expression (LCM): '368.017' |
||||
| AT5G11580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-5 | 185 | 33 | 84.86% | 218 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 275 | 3 | 98.92% | 278 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 397 | 14 | 96.59% | 411 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.576471' Avg. expression score for this sample: '2.66913' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G11570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.23077 x 10-1 | 1 | 1 | 0 | 6 | 50.00% | 100.00% | 2 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.576471' Avg. expression score for this sample: '4.45516' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT5G11570 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.80589' Avg. embryo expression (LCM): '0' |
|||||
| AT5G11570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G11570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11570 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.09091 x 10-1 | 13 | 0 | 100.00% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.1987 x 10-2 | 437 | 147 | 283 | 273 | 74.83% | 49.10% | 584 | 556 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.918647' Avg. expression score for this sample: '376.021' Avg. expression score in LCM sample: '469.157' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G11560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.66173 x 10-1 | 969 | 134 | 590 | 614 | 87.85% | 51.00% | 1103 | 1204 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.918647' Avg. expression score for this sample: '398.441' Avg. expression score in LCM sample: '469.157' Tissue used: 'full endosperm' |
|||||
| AT5G11560 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.8 x 10-6 | 583 | 296 | 166 | 107 | 66.33% | 39.19% | 879 | 273 | TAIR8 |
Avg. embryo expression (dissected): '602.573' Avg. embryo expression (LCM): '487.687' |
||||
| AT5G11560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-8 | 155 | 154 | 50.16% | 309 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1359 | 1290 | 51.30% | 2649 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11560 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 2614 | 192 | 93.16% | 2806 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.15215 x 10-1 | 361 | 203 | 152 | 248 | 64.01% | 62.00% | 564 | 400 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.04947' Avg. expression score for this sample: '535.154' Avg. expression score in LCM sample: '172.289' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G11550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.63723 x 10-1 | 211 | 131 | 101 | 193 | 61.70% | 65.65% | 342 | 294 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.04947' Avg. expression score for this sample: '245.873' Avg. expression score in LCM sample: '172.289' Tissue used: 'full endosperm' |
|||||
| AT5G11550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.08142 x 10-1 | 298 | 390 | 198 | 270 | 43.31% | 57.69% | 688 | 468 | TAIR8 |
Avg. embryo expression (dissected): '1119.47' Avg. embryo expression (LCM): '346.202' |
||||
| AT5G11550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.1767 x 10-2 | 47 | 16 | 74.60% | 63 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.26564 x 10-1 | 17 | 7 | 70.83% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.1698 x 10-2 | 38 | 10 | 79.17% | 48 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11540 | GulLO3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.440646' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G11540 | GulLO3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.499739' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT5G11540 | GulLO3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.165425' Avg. embryo expression (LCM): '0' |
|||||
| AT5G11540 | GulLO3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11540 | GulLO3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 10 | 1 | 90.91% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G11540 | GulLO3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 6 | 50.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G11530 | EMF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.68305 x 10-1 | 189 | 75 | 104 | 200 | 71.59% | 65.79% | 264 | 304 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.03665' Avg. expression score for this sample: '247.029' Avg. expression score in LCM sample: '90.7008' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G11530 | EMF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.4346 x 10-2 | 299 | 130 | 134 | 359 | 69.70% | 72.82% | 429 | 493 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.03665' Avg. expression score for this sample: '285.406' Avg. expression score in LCM sample: '90.7008' Tissue used: 'full endosperm' |
||||
| AT5G11530 | EMF1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.36014 x 10-1 | 109 | 79 | 40 | 34 | 57.98% | 45.95% | 188 | 74 | TAIR8 |
Avg. embryo expression (dissected): '179.818' Avg. embryo expression (LCM): '93.6242' |
|||
| AT5G11530 | EMF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.15315 x 10-1 | 64 | 29 | 68.82% | 93 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G11530 | EMF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 910 | 385 | 70.27% | 1295 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G11530 | EMF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.0999 x 10-2 | 771 | 268 | 74.21% | 1039 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G11520 | ASP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '103.061' Avg. expression score in LCM sample: '65.4351' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G11520 | ASP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '111.092' Avg. expression score in LCM sample: '65.4351' Tissue used: 'full endosperm' |
||||||
| AT5G11520 | ASP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '131.715' Avg. embryo expression (LCM): '51.0506' |
|||||
| AT5G11520 | ASP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11520 | ASP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11520 | ASP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11510 | MYB3R-4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 16 | 3 | 12 | 13 | 84.21% | 52.00% | 19 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.325302' Avg. expression score for this sample: '34.7229' Avg. expression score in LCM sample: '57.1602' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G11510 | MYB3R-4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.81099 x 10-1 | 17 | 9 | 20 | 19 | 65.38% | 48.72% | 26 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.325302' Avg. expression score for this sample: '35.0547' Avg. expression score in LCM sample: '57.1602' Tissue used: 'full endosperm' |
||||
| AT5G11510 | MYB3R-4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.94619 x 10-1 | 21 | 17 | 6 | 7 | 55.26% | 53.85% | 38 | 13 | TAIR8 |
Avg. embryo expression (dissected): '49.1881' Avg. embryo expression (LCM): '44.4071' |
|||
| AT5G11510 | MYB3R-4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.022 x 10-2 | 0 | 4 | 0.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G11510 | MYB3R-4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.6413 x 10-2 | 5 | 11 | 31.25% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G11510 | MYB3R-4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.11105 x 10-1 | 14 | 5 | 73.68% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G11500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.52423 x 10-1 | 28 | 7 | 13 | 19 | 80.00% | 59.38% | 35 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002447' Avg. expression score for this sample: '1269.4' Avg. expression score in LCM sample: '504.036' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G11500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.18 x 10-4 | 72 | 11 | 17 | 64 | 86.75% | 79.01% | 83 | 81 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002447' Avg. expression score for this sample: '1427.03' Avg. expression score in LCM sample: '504.036' Tissue used: 'full endosperm' |
|||||
| AT5G11500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.28656 x 10-1 | 12 | 6 | 5 | 6 | 66.67% | 54.55% | 18 | 11 | TAIR8 |
Avg. embryo expression (dissected): '1237.22' Avg. embryo expression (LCM): '984.241' |
||||
| AT5G11500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.448 x 10-3 | 4 | 7 | 36.36% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.193 x 10-3 | 64 | 35 | 64.65% | 99 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.30646 x 10-1 | 53 | 12 | 81.54% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.24183 x 10-1 | 8 | 7 | 7 | 7 | 53.33% | 50.00% | 15 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.8693' Avg. expression score for this sample: '154.957' Avg. expression score in LCM sample: '138.866' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G11490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.75188 x 10-1 | 14 | 4 | 11 | 24 | 77.78% | 68.57% | 18 | 35 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.8693' Avg. expression score for this sample: '193.767' Avg. expression score in LCM sample: '138.866' Tissue used: 'full endosperm' |
|||||
| AT5G11490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.89073 x 10-1 | 9 | 14 | 2 | 3 | 39.13% | 60.00% | 23 | 5 | TAIR8 |
Avg. embryo expression (dissected): '157.283' Avg. embryo expression (LCM): '130.207' |
||||
| AT5G11490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.6384 x 10-1 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.90144 x 10-1 | 26 | 9 | 74.29% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.155 x 10-3 | 40 | 6 | 86.96% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '259.043' Avg. expression score in LCM sample: '42.4035' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G11480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 2 | 1 | 33.33% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '199.471' Avg. expression score in LCM sample: '42.4035' Tissue used: 'full endosperm' |
||||||
| AT5G11480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 2 | 1 | 0 | 33.33% | 0.00% | 3 | 1 | TAIR8 |
Avg. embryo expression (dissected): '952.623' Avg. embryo expression (LCM): '555.968' |
||||
| AT5G11480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.66667 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 6 | 40.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11475 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G11475 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G11475 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G11475 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G11475 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G11475 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G11470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.592075' Avg. expression score for this sample: '16.8934' Avg. expression score in LCM sample: '9.24499' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G11470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 3 | 3 | 50.00% | 0 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.592075' Avg. expression score for this sample: '38.5614' Avg. expression score in LCM sample: '9.24499' Tissue used: 'full endosperm' |
||||||
| AT5G11470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '20.6796' Avg. embryo expression (LCM): '10.9385' |
||||||
| AT5G11470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.44444 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.44444 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.0702 x 10-2 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.09359 x 10-1 | 8 | 11 | 10 | 10 | 42.11% | 50.00% | 19 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.018527' Avg. expression score for this sample: '98.8706' Avg. expression score in LCM sample: '111.572' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G11460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.31473 x 10-1 | 12 | 14 | 9 | 9 | 46.15% | 50.00% | 26 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.018527' Avg. expression score for this sample: '60.5318' Avg. expression score in LCM sample: '111.572' Tissue used: 'full endosperm' |
|||||
| AT5G11460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '15.775' Avg. embryo expression (LCM): '20.9854' |
|||||
| AT5G11460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.97515 x 10-1 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.5443 x 10-2 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G11450 | PPD5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '34.721' Avg. expression score in LCM sample: '10.4208' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G11450 | PPD5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '38.3757' Avg. expression score in LCM sample: '10.4208' Tissue used: 'full endosperm' |
||||||
| AT5G11450 | PPD5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '80.5475' Avg. embryo expression (LCM): '209.125' |
|||||
| AT5G11450 | PPD5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |