| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G13400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.8 x 10-5 | 49 | 3 | 2 | 18 | 94.23% | 90.00% | 52 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.2e-11' Avg. expression score for this sample: '50.2362' Avg. expression score in LCM sample: '2.68972' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3 x 10-7 | 52 | 2 | 1 | 35 | 96.30% | 97.22% | 54 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.2e-11' Avg. expression score for this sample: '61.2015' Avg. expression score in LCM sample: '2.68972' Tissue used: 'full endosperm' |
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| AT5G13400 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.86193 x 10-1 | 26 | 10 | 11 | 10 | 72.22% | 47.62% | 36 | 21 | TAIR8 |
Avg. embryo expression (dissected): '70.0564' Avg. embryo expression (LCM): '62.7678' |
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| AT5G13400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.05892 x 10-1 | 239 | 10 | 95.98% | 249 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13400 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.42 x 10-4 | 1036 | 9 | 99.14% | 1045 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13390 | NEF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.7444 x 10-2 | 56 | 16 | 70 | 53 | 77.78% | 43.09% | 72 | 123 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.385577' Avg. expression score for this sample: '777.01' Avg. expression score in LCM sample: '355.66' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13390 | NEF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.00069 x 10-1 | 104 | 36 | 57 | 103 | 74.29% | 64.38% | 140 | 160 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.385577' Avg. expression score for this sample: '642.451' Avg. expression score in LCM sample: '355.66' Tissue used: 'full endosperm' |
||||
| AT5G13390 | NEF1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 38 | 38 | 19 | 18 | 50.00% | 48.65% | 76 | 37 | TAIR8 |
Avg. embryo expression (dissected): '676.615' Avg. embryo expression (LCM): '356.814' |
|||
| AT5G13390 | NEF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.52528 x 10-1 | 16 | 5 | 76.19% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13390 | NEF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.56165 x 10-1 | 140 | 64 | 68.63% | 204 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13390 | NEF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.8 x 10-13 | 204 | 26 | 88.70% | 230 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.343251' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT5G13380 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 2 | 0 | 0 | 33.33% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.715782' Avg. embryo expression (LCM): '0' |
|||||
| AT5G13380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13380 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.75118 x 10-1 | 51 | 29 | 10 | 18 | 63.75% | 64.29% | 80 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.41322' Avg. expression score for this sample: '29.6868' Avg. expression score in LCM sample: '30.9391' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.85015 x 10-1 | 139 | 68 | 64 | 96 | 67.15% | 60.00% | 207 | 160 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.41322' Avg. expression score for this sample: '80.5974' Avg. expression score in LCM sample: '30.9391' Tissue used: 'full endosperm' |
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| AT5G13370 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 23 | 13 | 14 | 6 | 63.89% | 30.00% | 36 | 20 | TAIR8 |
Avg. embryo expression (dissected): '38.3752' Avg. embryo expression (LCM): '10.8129' |
||||
| AT5G13370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 23 | 13 | 63.89% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.734 x 10-2 | 188 | 142 | 56.97% | 330 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13370 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.38186 x 10-1 | 151 | 80 | 65.37% | 231 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.39449 x 10-1 | 36 | 7 | 18 | 19 | 83.72% | 51.35% | 43 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.425214' Avg. expression score for this sample: '25.8721' Avg. expression score in LCM sample: '24.0017' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.58594 x 10-1 | 79 | 18 | 26 | 30 | 81.44% | 53.57% | 97 | 56 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.425214' Avg. expression score for this sample: '43.9077' Avg. expression score in LCM sample: '24.0017' Tissue used: 'full endosperm' |
|||||
| AT5G13360 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 43 | 36 | 14 | 9 | 54.43% | 39.13% | 79 | 23 | TAIR8 |
Avg. embryo expression (dissected): '67.6803' Avg. embryo expression (LCM): '37.5878' |
||||
| AT5G13360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.61013 x 10-1 | 10 | 3 | 76.92% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.71851 x 10-1 | 16 | 11 | 59.26% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13360 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.38 x 10-4 | 49 | 4 | 92.45% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.308575' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G13350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G13350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.35128 x 10-1 | 33 | 15 | 5 | 35 | 68.75% | 87.50% | 48 | 40 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000141' Avg. expression score for this sample: '76.4455' Avg. expression score in LCM sample: '11.3909' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.14 x 10-4 | 139 | 41 | 33 | 131 | 77.22% | 79.88% | 180 | 164 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000141' Avg. expression score for this sample: '121.251' Avg. expression score in LCM sample: '11.3909' Tissue used: 'full endosperm' |
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| AT5G13340 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.47407 x 10-1 | 20 | 19 | 10 | 5 | 51.28% | 33.33% | 39 | 15 | TAIR8 |
Avg. embryo expression (dissected): '101.036' Avg. embryo expression (LCM): '55.1698' |
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| AT5G13340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.9347 x 10-2 | 5 | 5 | 50.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.3192 x 10-2 | 67 | 30 | 69.07% | 97 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13340 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4 x 10-6 | 120 | 6 | 95.24% | 126 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13330 | Rap2.6L | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.33686' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13330 | Rap2.6L | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 1 | 0 | 1 | 66.67% | 100.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '21.7714' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G13330 | Rap2.6L | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '9.92144' Avg. embryo expression (LCM): '18.4109' |
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| AT5G13330 | Rap2.6L | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13330 | Rap2.6L | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13330 | Rap2.6L | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13320 | PBS3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13320 | PBS3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 3 | 100.00% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '17.0918' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G13320 | PBS3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT5G13320 | PBS3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13320 | PBS3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13320 | PBS3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.85816 x 10-1 | 44 | 17 | 18 | 31 | 72.13% | 63.27% | 61 | 49 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.028629' Avg. expression score for this sample: '90.5633' Avg. expression score in LCM sample: '61.599' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0687 x 10-2 | 89 | 33 | 26 | 109 | 72.95% | 80.74% | 122 | 135 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.028629' Avg. expression score for this sample: '111.157' Avg. expression score in LCM sample: '61.599' Tissue used: 'full endosperm' |
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| AT5G13310 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.41491 x 10-1 | 19 | 20 | 7 | 4 | 48.72% | 36.36% | 39 | 11 | TAIR8 |
Avg. embryo expression (dissected): '92.3096' Avg. embryo expression (LCM): '88.8268' |
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| AT5G13310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.47063 x 10-1 | 21 | 4 | 84.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.65218 x 10-1 | 459 | 167 | 73.32% | 626 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13310 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.05432 x 10-1 | 273 | 85 | 76.26% | 358 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13300 | SFC | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.71382 x 10-1 | 1263 | 563 | 503 | 904 | 69.17% | 64.25% | 1826 | 1407 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.012585' Avg. expression score for this sample: '713.275' Avg. expression score in LCM sample: '233.124' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13300 | SFC | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.57 x 10-4 | 701 | 208 | 315 | 665 | 77.12% | 67.86% | 909 | 980 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.012585' Avg. expression score for this sample: '436.398' Avg. expression score in LCM sample: '233.124' Tissue used: 'full endosperm' |
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| AT5G13300 | SFC | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.97683 x 10-1 | 965 | 981 | 152 | 141 | 49.59% | 48.12% | 1946 | 293 | TAIR8 |
Avg. embryo expression (dissected): '668.895' Avg. embryo expression (LCM): '520.189' |
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| AT5G13300 | SFC | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.3489 x 10-2 | 95 | 59 | 61.69% | 154 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13300 | SFC | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.8 x 10-9 | 148 | 18 | 89.16% | 166 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13300 | SFC | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.6 x 10-11 | 233 | 36 | 86.62% | 269 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13290 | CRN | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 3 | 1 | 100.00% | 25.00% | 1 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.776066' Avg. expression score for this sample: '90.8534' Avg. expression score in LCM sample: '50.6049' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13290 | CRN | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 0 | 8 | 7 | 100.00% | 46.67% | 6 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.776066' Avg. expression score for this sample: '62.3825' Avg. expression score in LCM sample: '50.6049' Tissue used: 'full endosperm' |
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| AT5G13290 | CRN | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 2 | 3 | 0 | 71.43% | 0.00% | 7 | 3 | TAIR8 |
Avg. embryo expression (dissected): '139.118' Avg. embryo expression (LCM): '92.4562' |
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| AT5G13290 | CRN | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.05291 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13290 | CRN | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13290 | CRN | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.15453 x 10-1 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13280 | AK-LYS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 1 | 3 | 3 | 66.67% | 50.00% | 3 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.831981' Avg. expression score for this sample: '106.916' Avg. expression score in LCM sample: '60.0851' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13280 | AK-LYS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.35353 x 10-1 | 19 | 5 | 6 | 13 | 79.17% | 68.42% | 24 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.831981' Avg. expression score for this sample: '122.969' Avg. expression score in LCM sample: '60.0851' Tissue used: 'full endosperm' |
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| AT5G13280 | AK-LYS1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 3 | 2 | 0 | 57.14% | 0.00% | 7 | 2 | TAIR8 |
Avg. embryo expression (dissected): '154.773' Avg. embryo expression (LCM): '197.647' |
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| AT5G13280 | AK-LYS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13280 | AK-LYS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.8829 x 10-2 | 20 | 1 | 95.24% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13280 | AK-LYS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.8 x 10-4 | 77 | 5 | 93.90% | 82 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13270 | RARE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.7826 x 10-2 | 5 | 0 | 0 | 8 | 100.00% | 100.00% | 5 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.17269' Avg. expression score for this sample: '16.4538' Avg. expression score in LCM sample: '13.0224' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13270 | RARE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.49447 x 10-1 | 5 | 1 | 5 | 12 | 83.33% | 70.59% | 6 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.17269' Avg. expression score for this sample: '28.4012' Avg. expression score in LCM sample: '13.0224' Tissue used: 'full endosperm' |
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| AT5G13270 | RARE1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.90793 x 10-1 | 3 | 10 | 5 | 2 | 23.08% | 28.57% | 13 | 7 | TAIR8 |
Avg. embryo expression (dissected): '40.1917' Avg. embryo expression (LCM): '40.0493' |
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| AT5G13270 | RARE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13270 | RARE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.6207 x 10-1 | 11 | 1 | 91.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13270 | RARE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.93735 x 10-1 | 37 | 3 | 92.50% | 40 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13260 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '49.0885' Avg. expression score in LCM sample: '25.0306' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13260 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '52.3138' Avg. expression score in LCM sample: '25.0306' Tissue used: 'full endosperm' |
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| AT5G13260 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '80.3771' Avg. embryo expression (LCM): '97.8564' |
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| AT5G13260 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13260 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13260 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.298156' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 1 | 100.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.80469' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G13250 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 1 | 1 | 1 | 66.67% | 50.00% | 3 | 2 | TAIR8 |
Avg. embryo expression (dissected): '6.6912' Avg. embryo expression (LCM): '1.45679' |
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| AT5G13250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13250 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 27 | 4 | 15 | 14 | 87.10% | 48.28% | 31 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.042457' Avg. expression score for this sample: '72.2803' Avg. expression score in LCM sample: '12.6402' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0673 x 10-2 | 34 | 5 | 16 | 59 | 87.18% | 78.67% | 39 | 75 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.042457' Avg. expression score for this sample: '47.8571' Avg. expression score in LCM sample: '12.6402' Tissue used: 'full endosperm' |
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| AT5G13240 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.90856 x 10-1 | 23 | 13 | 4 | 4 | 63.89% | 50.00% | 36 | 8 | TAIR8 |
Avg. embryo expression (dissected): '55.9916' Avg. embryo expression (LCM): '28.7843' |
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| AT5G13240 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.69344 x 10-1 | 11 | 1 | 91.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |