Displaying data sets 31401 - 31500 of 169464 in total
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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G13580 ABCG6 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Avg. embryo expression (dissected): '.809986'
Avg. embryo expression (LCM): '0'
AT5G13580 ABCG6 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13580 ABCG6 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.3956 x 10-2 3 3 50.00% 6 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13580 ABCG6 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13570 DCP2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 5.15931 x 10-1 70 16 24 28 81.40% 53.85% 86 52 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.042151'
Avg. expression score for this sample: '349.274'
Avg. expression score in LCM sample: '59.8793'
Tissue used: 'pure endosperm, no chalazal'
AT5G13570 DCP2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.7714 x 10-2 74 17 38 95 81.32% 71.43% 91 133 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.042151'
Avg. expression score for this sample: '350.365'
Avg. expression score in LCM sample: '59.8793'
Tissue used: 'full endosperm'
AT5G13570 DCP2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.3489 x 10-1 16 31 2 3 34.04% 60.00% 47 5 TAIR8 Avg. embryo expression (dissected): '202.373'
Avg. embryo expression (LCM): '163.575'
AT5G13570 DCP2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13570 DCP2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 7.1659 x 10-2 102 53 65.81% 155 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13570 DCP2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.2 x 10-5 162 20 89.01% 182 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13560 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.68365 x 10-1 572 177 393 454 76.37% 53.60% 749 847 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.273613'
Avg. expression score for this sample: '342.593'
Avg. expression score in LCM sample: '192.028'
Tissue used: 'pure endosperm, no chalazal'
AT5G13560 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 9.65907 x 10-1 464 130 282 354 78.11% 55.66% 594 636 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.273613'
Avg. expression score for this sample: '350.875'
Avg. expression score in LCM sample: '192.028'
Tissue used: 'full endosperm'
AT5G13560 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.7594 x 10-1 403 292 130 67 57.99% 34.01% 695 197 TAIR8 Avg. embryo expression (dissected): '322.515'
Avg. embryo expression (LCM): '268.188'
AT5G13560 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.3 x 10-6 105 108 49.30% 213 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13560 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 9.4696 x 10-2 98 37 72.59% 135 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13560 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.3 x 10-25 271 23 92.18% 294 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13550 SULTR4;1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.56 x 10-3 22 1 1 18 95.65% 94.74% 23 19 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '5.0e-07'
Avg. expression score for this sample: '12.6847'
Avg. expression score in LCM sample: '2.61623'
Tissue used: 'pure endosperm, no chalazal'
AT5G13550 SULTR4;1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.2 x 10-5 33 5 10 74 86.84% 88.10% 38 84 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '5.0e-07'
Avg. expression score for this sample: '39.3996'
Avg. expression score in LCM sample: '2.61623'
Tissue used: 'full endosperm'
AT5G13550 SULTR4;1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.58025 x 10-1 21 11 3 5 65.62% 62.50% 32 8 TAIR8 Avg. embryo expression (dissected): '16.2637'
Avg. embryo expression (LCM): '12.3325'
AT5G13550 SULTR4;1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.23467 x 10-1 20 0 100.00% 20 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13550 SULTR4;1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.428 x 10-3 137 3 97.86% 140 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13550 SULTR4;1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.6 x 10-5 144 0 100.00% 144 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13530 KEG endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.28262 x 10-1 72 34 36 94 67.92% 72.31% 106 130 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001788'
Avg. expression score for this sample: '409.927'
Avg. expression score in LCM sample: '184.106'
Tissue used: 'pure endosperm, no chalazal'
AT5G13530 KEG endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.86 x 10-4 166 52 48 168 76.15% 77.78% 218 216 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001788'
Avg. expression score for this sample: '388.445'
Avg. expression score in LCM sample: '184.106'
Tissue used: 'full endosperm'
AT5G13530 KEG embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.23077 x 10-1 58 55 22 25 51.33% 53.19% 113 47 TAIR8 Avg. embryo expression (dissected): '464.202'
Avg. embryo expression (LCM): '232.472'
AT5G13530 KEG endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 8.7311 x 10-2 35 5 87.50% 40 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13530 KEG endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.07 x 10-4 269 49 84.59% 318 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13530 KEG endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.5 x 10-11 333 33 90.98% 366 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13520 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.84398 x 10-1 113 56 31 74 66.86% 70.48% 169 105 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.614041'
Avg. expression score for this sample: '344.927'
Avg. expression score in LCM sample: '154.211'
Tissue used: 'pure endosperm, no chalazal'
AT5G13520 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.27191 x 10-1 126 51 44 78 71.19% 63.93% 177 122 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.614041'
Avg. expression score for this sample: '288.803'
Avg. expression score in LCM sample: '154.211'
Tissue used: 'full endosperm'
AT5G13520 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.76233 x 10-1 284 290 85 83 49.48% 49.40% 574 168 TAIR8 Avg. embryo expression (dissected): '1280.49'
Avg. embryo expression (LCM): '995.908'
AT5G13520 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.8075 x 10-2 22 21 51.16% 43 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13520 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.101 x 10-3 173 131 56.91% 304 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13520 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 9.0 x 10-7 199 36 84.68% 235 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13510 EMB3136 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '159.632'
Avg. expression score in LCM sample: '79.3981'
Tissue used: 'pure endosperm, no chalazal'
AT5G13510 EMB3136 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '142.161'
Avg. expression score in LCM sample: '79.3981'
Tissue used: 'full endosperm'
AT5G13510 EMB3136 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '611.036'
Avg. embryo expression (LCM): '449.271'
AT5G13510 EMB3136 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13510 EMB3136 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13510 EMB3136 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13500 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '69.6284'
Avg. expression score in LCM sample: '23.3403'
Tissue used: 'pure endosperm, no chalazal'
AT5G13500 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 4 0 0 0 100.00% 4 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '128.954'
Avg. expression score in LCM sample: '23.3403'
Tissue used: 'full endosperm'
AT5G13500 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '73.0662'
Avg. embryo expression (LCM): '39.8986'
AT5G13500 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13500 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13500 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13490 AAC2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 4 5 2 6 44.44% 75.00% 9 8 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '223.73'
Avg. expression score in LCM sample: '136.088'
Tissue used: 'pure endosperm, no chalazal'
AT5G13490 AAC2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.64484 x 10-1 8 1 6 11 88.89% 64.71% 9 17 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '195.378'
Avg. expression score in LCM sample: '136.088'
Tissue used: 'full endosperm'
AT5G13490 AAC2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 4 3 0 0 57.14% 7 0 TAIR8 Avg. embryo expression (dissected): '154.478'
Avg. embryo expression (LCM): '210.972'
AT5G13490 AAC2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 6.51777 x 10-1 5 1 83.33% 6 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13490 AAC2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.41548 x 10-1 37 8 82.22% 45 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13490 AAC2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 12 5 70.59% 17 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13480 FY endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 21 7 7 9 75.00% 56.25% 28 16 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '116.075'
Avg. expression score in LCM sample: '62.7601'
Tissue used: 'pure endosperm, no chalazal'
AT5G13480 FY endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 14 5 6 7 73.68% 53.85% 19 13 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '69.3739'
Avg. expression score in LCM sample: '62.7601'
Tissue used: 'full endosperm'
AT5G13480 FY embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 11 11 7 5 50.00% 41.67% 22 12 TAIR8 Avg. embryo expression (dissected): '232.085'
Avg. embryo expression (LCM): '145.88'
AT5G13480 FY endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 2 1 66.67% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13480 FY endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.29945 x 10-1 22 4 84.62% 26 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13480 FY endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.1761 x 10-2 18 2 90.00% 20 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13470 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 0 1 0 1 0.00% 100.00% 1 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '4.67596'
Avg. expression score in LCM sample: '2.04301'
Tissue used: 'pure endosperm, no chalazal'
AT5G13470 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 2 1 1 2 66.67% 66.67% 3 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '10.4366'
Avg. expression score in LCM sample: '2.04301'
Tissue used: 'full endosperm'
AT5G13470 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '8.53131'
Avg. embryo expression (LCM): '50.6487'
AT5G13470 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.44444 x 10-1 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13470 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.44444 x 10-1 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13470 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.90909 x 10-1 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13460 IQD11 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '42.8306'
Avg. expression score in LCM sample: '4.15951'
Tissue used: 'pure endosperm, no chalazal'
AT5G13460 IQD11 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '112.257'
Avg. expression score in LCM sample: '4.15951'
Tissue used: 'full endosperm'
AT5G13460 IQD11 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '71.8515'
Avg. embryo expression (LCM): '45.4872'
AT5G13460 IQD11 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13460 IQD11 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13460 IQD11 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13450 ATP5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.81761 x 10-1 13 8 9 8 61.90% 47.06% 21 17 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.106377'
Avg. expression score for this sample: '74.885'
Avg. expression score in LCM sample: '98.2703'
Tissue used: 'pure endosperm, no chalazal'
AT5G13450 ATP5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.89132 x 10-1 21 5 30 22 80.77% 42.31% 26 52 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.106377'
Avg. expression score for this sample: '138.682'
Avg. expression score in LCM sample: '98.2703'
Tissue used: 'full endosperm'
AT5G13450 ATP5 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.95098 x 10-1 6 4 1 2 60.00% 66.67% 10 3 TAIR8 Avg. embryo expression (dissected): '100.777'
Avg. embryo expression (LCM): '163.186'
AT5G13450 ATP5 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 7.5405 x 10-1 7 4 63.64% 11 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13450 ATP5 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0766 x 10-2 32 55 36.78% 87 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13450 ATP5 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.2 x 10-9 73 5 93.59% 78 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13440 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.444444'
Avg. expression score for this sample: '232.375'
Avg. expression score in LCM sample: '270.148'
Tissue used: 'pure endosperm, no chalazal'
AT5G13440 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 4.44444 x 10-1 5 0 0 0 100.00% 5 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.444444'
Avg. expression score for this sample: '306.452'
Avg. expression score in LCM sample: '270.148'
Tissue used: 'full endosperm'
AT5G13440 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '202.664'
Avg. embryo expression (LCM): '234.745'
AT5G13440 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13440 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.375 2 1 66.67% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13440 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 3 0 100.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13430 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.85567 x 10-1 62 19 15 25 76.54% 62.50% 81 40 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.471591'
Avg. expression score for this sample: '169.648'
Avg. expression score in LCM sample: '171.069'
Tissue used: 'pure endosperm, no chalazal'
AT5G13430 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.79016 x 10-1 28 14 17 39 66.67% 69.64% 42 56 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.471591'
Avg. expression score for this sample: '122.296'
Avg. expression score in LCM sample: '171.069'
Tissue used: 'full endosperm'
AT5G13430 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.19161 x 10-1 67 56 18 12 54.47% 40.00% 123 30 TAIR8 Avg. embryo expression (dissected): '290.527'
Avg. embryo expression (LCM): '260.44'
AT5G13430 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.95576 x 10-1 6 6 50.00% 12 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13430 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.00545 x 10-1 123 38 76.40% 161 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13430 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 8.5 x 10-11 190 12 94.06% 202 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13420 TRA2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 5.28673 x 10-1 55 20 32 30 73.33% 48.39% 75 62 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.298265'
Avg. expression score for this sample: '250.723'
Avg. expression score in LCM sample: '122.051'
Tissue used: 'pure endosperm, no chalazal'
AT5G13420 TRA2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.06939 x 10-1 108 49 67 96 68.79% 58.90% 157 163 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.298265'
Avg. expression score for this sample: '378.597'
Avg. expression score in LCM sample: '122.051'
Tissue used: 'full endosperm'
AT5G13420 TRA2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 5.775 x 10-3 158 89 30 31 63.97% 50.82% 247 61 TAIR8 Avg. embryo expression (dissected): '648.52'
Avg. embryo expression (LCM): '545.092'
AT5G13420 TRA2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.31963 x 10-1 28 20 58.33% 48 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13420 TRA2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.7 x 10-7 63 5 92.65% 68 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13420 TRA2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.1 x 10-21 179 7 96.24% 186 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13410 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 4 2 1 6 66.67% 85.71% 6 7 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '25.8289'
Avg. expression score in LCM sample: '9.1862'
Tissue used: 'pure endosperm, no chalazal'
AT5G13410 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 11 5 3 4 68.75% 57.14% 16 7 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '36.5194'
Avg. expression score in LCM sample: '9.1862'
Tissue used: 'full endosperm'
AT5G13410 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 3.34842 x 10-1 7 2 0 0 77.78% 9 0 TAIR8 Avg. embryo expression (dissected): '36.7713'
Avg. embryo expression (LCM): '51.0255'
AT5G13410 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13410 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.62826 x 10-1 7 0 100.00% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G13410 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.4421 x 10-2 13 0 100.00% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'