| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G13750 | ZIFL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13750 | ZIFL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13740 | ZIF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 3 | 0 | 4 | 25.00% | 100.00% | 4 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.3231' Avg. expression score in LCM sample: '1.55798' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13740 | ZIF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 7 | 3 | 17 | 30.00% | 85.00% | 10 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '8.5861' Avg. expression score in LCM sample: '1.55798' Tissue used: 'full endosperm' |
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| AT5G13740 | ZIF1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 20 | 23 | 6 | 7 | 46.51% | 53.85% | 43 | 13 | TAIR8 |
Avg. embryo expression (dissected): '24.235' Avg. embryo expression (LCM): '19.8928' |
|||
| AT5G13740 | ZIF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.08014 x 10-1 | 2 | 2 | 50.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13740 | ZIF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.06018 x 10-1 | 11 | 3 | 78.57% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13740 | ZIF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.64433 x 10-1 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13730 | SIG4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.187028' Avg. expression score in LCM sample: '1.07295' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13730 | SIG4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 5 | 1 | 0 | 0 | 83.33% | 6 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.45165' Avg. expression score in LCM sample: '1.07295' Tissue used: 'full endosperm' |
|||||
| AT5G13730 | SIG4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.36461 x 10-1 | 11 | 3 | 0 | 0 | 78.57% | 14 | 0 | TAIR8 |
Avg. embryo expression (dissected): '5.41344' Avg. embryo expression (LCM): '6.41743' |
||||
| AT5G13730 | SIG4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13730 | SIG4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13730 | SIG4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.65734 x 10-1 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13720 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 2 | 0 | 2 | 50.00% | 100.00% | 4 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.681659' Avg. expression score for this sample: '8.70545' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13720 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.76471 x 10-1 | 0 | 0 | 1 | 8 | 88.89% | 0 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.681659' Avg. expression score for this sample: '5.77357' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT5G13720 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.459 x 10-3 | 2 | 21 | 4 | 2 | 8.70% | 33.33% | 23 | 6 | TAIR8 |
Avg. embryo expression (dissected): '52.1377' Avg. embryo expression (LCM): '21.2114' |
||||
| AT5G13720 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.25 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13720 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.13712 x 10-1 | 10 | 1 | 90.91% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13720 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13710 | SMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.13738 x 10-1 | 16 | 7 | 5 | 14 | 69.57% | 73.68% | 23 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.767791' Avg. expression score for this sample: '265.234' Avg. expression score in LCM sample: '142.041' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13710 | SMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 18 | 12 | 8 | 26 | 60.00% | 76.47% | 30 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.767791' Avg. expression score for this sample: '308.047' Avg. expression score in LCM sample: '142.041' Tissue used: 'full endosperm' |
||||
| AT5G13710 | SMT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.39132 x 10-1 | 26 | 17 | 3 | 2 | 60.47% | 40.00% | 43 | 5 | TAIR8 |
Avg. embryo expression (dissected): '327.672' Avg. embryo expression (LCM): '366.685' |
|||
| AT5G13710 | SMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.53993 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13710 | SMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.61469 x 10-1 | 41 | 13 | 75.93% | 54 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13710 | SMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.39387 x 10-1 | 47 | 11 | 81.03% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13700 | PAO1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.44444 x 10-1 | 4 | 0 | 0 | 1 | 100.00% | 100.00% | 4 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01022' Avg. expression score for this sample: '169.087' Avg. expression score in LCM sample: '20.8416' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13700 | PAO1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.5311 x 10-2 | 19 | 2 | 4 | 21 | 90.48% | 84.00% | 21 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01022' Avg. expression score for this sample: '462.782' Avg. expression score in LCM sample: '20.8416' Tissue used: 'full endosperm' |
||||
| AT5G13700 | PAO1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 0 | 1 | 0 | 100.00% | 0.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '127.465' Avg. embryo expression (LCM): '85.1723' |
|||
| AT5G13700 | PAO1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13700 | PAO1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.72 x 10-4 | 28 | 24 | 53.85% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13700 | PAO1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 58 | 8 | 87.88% | 66 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13690 | CYL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 2 | 1 | 4 | 50.00% | 80.00% | 4 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '160.03' Avg. expression score in LCM sample: '76.5761' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13690 | CYL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 8 | 3 | 7 | 15 | 72.73% | 68.18% | 11 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '275.065' Avg. expression score in LCM sample: '76.5761' Tissue used: 'full endosperm' |
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| AT5G13690 | CYL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 5 | 0 | 1 | 28.57% | 100.00% | 7 | 1 | TAIR8 |
Avg. embryo expression (dissected): '196.092' Avg. embryo expression (LCM): '100.732' |
|||
| AT5G13690 | CYL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.25581 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13690 | CYL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.12976 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13690 | CYL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.14468 x 10-1 | 13 | 3 | 81.25% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13680 | ABO1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.38796 x 10-1 | 140 | 52 | 57 | 138 | 72.92% | 70.77% | 192 | 195 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000014' Avg. expression score for this sample: '110.957' Avg. expression score in LCM sample: '102.841' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13680 | ABO1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.4 x 10-5 | 283 | 108 | 86 | 338 | 72.38% | 79.72% | 391 | 424 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000014' Avg. expression score for this sample: '152.304' Avg. expression score in LCM sample: '102.841' Tissue used: 'full endosperm' |
||||
| AT5G13680 | ABO1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 288 | 329 | 73 | 112 | 46.68% | 60.54% | 617 | 185 | TAIR8 |
Avg. embryo expression (dissected): '325.778' Avg. embryo expression (LCM): '337.16' |
|||
| AT5G13680 | ABO1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.41 x 10-4 | 150 | 22 | 87.21% | 172 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13680 | ABO1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.1357 x 10-2 | 944 | 400 | 70.24% | 1344 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13680 | ABO1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 807 | 273 | 74.72% | 1080 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13670 | UMAMIT15 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '437.534' Avg. expression score in LCM sample: '493.291' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13670 | UMAMIT15 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '573.712' Avg. expression score in LCM sample: '493.291' Tissue used: 'full endosperm' |
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| AT5G13670 | UMAMIT15 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '27.0004' Avg. embryo expression (LCM): '4.78482' |
|||||
| AT5G13670 | UMAMIT15 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13670 | UMAMIT15 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13670 | UMAMIT15 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.60394 x 10-1 | 18 | 26 | 4 | 51 | 40.91% | 92.73% | 44 | 55 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000528' Avg. expression score for this sample: '30.4324' Avg. expression score in LCM sample: '22.6936' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.5 x 10-6 | 55 | 7 | 8 | 67 | 88.71% | 89.33% | 62 | 75 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000528' Avg. expression score for this sample: '63.3096' Avg. expression score in LCM sample: '22.6936' Tissue used: 'full endosperm' |
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| AT5G13660 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.6047 x 10-2 | 4 | 20 | 5 | 3 | 16.67% | 37.50% | 24 | 8 | TAIR8 |
Avg. embryo expression (dissected): '18.3519' Avg. embryo expression (LCM): '14.5428' |
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| AT5G13660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.86104 x 10-1 | 20 | 2 | 90.91% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.02 x 10-4 | 102 | 6 | 94.44% | 108 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13660 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.9 x 10-7 | 116 | 2 | 98.31% | 118 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13650 | SVR3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 3 | 2 | 4 | 72.73% | 66.67% | 11 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '93.7392' Avg. expression score in LCM sample: '58.9827' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13650 | SVR3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 20 | 6 | 8 | 9 | 76.92% | 52.94% | 26 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '162.751' Avg. expression score in LCM sample: '58.9827' Tissue used: 'full endosperm' |
||||
| AT5G13650 | SVR3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.91329 x 10-1 | 12 | 7 | 4 | 4 | 63.16% | 50.00% | 19 | 8 | TAIR8 |
Avg. embryo expression (dissected): '211.164' Avg. embryo expression (LCM): '242.129' |
|||
| AT5G13650 | SVR3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13650 | SVR3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.00521 x 10-1 | 12 | 10 | 54.55% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13650 | SVR3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.17539 x 10-1 | 38 | 8 | 82.61% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13640 | PDAT | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.35975 x 10-1 | 65 | 71 | 31 | 115 | 47.79% | 78.77% | 136 | 146 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.901982' Avg. expression score for this sample: '133.539' Avg. expression score in LCM sample: '102.709' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13640 | PDAT | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.31294 x 10-1 | 87 | 69 | 29 | 124 | 55.77% | 81.05% | 156 | 153 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.901982' Avg. expression score for this sample: '113.245' Avg. expression score in LCM sample: '102.709' Tissue used: 'full endosperm' |
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| AT5G13640 | PDAT | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.56518 x 10-1 | 38 | 80 | 16 | 43 | 32.20% | 72.88% | 118 | 59 | TAIR8 |
Avg. embryo expression (dissected): '143.182' Avg. embryo expression (LCM): '89.9948' |
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| AT5G13640 | PDAT | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.6 x 10-5 | 42 | 3 | 93.33% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13640 | PDAT | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.5994 x 10-2 | 193 | 66 | 74.52% | 259 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13640 | PDAT | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.0 x 10-5 | 160 | 37 | 81.22% | 197 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13630 | GUN5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.64356 x 10-1 | 30 | 18 | 9 | 19 | 62.50% | 67.86% | 48 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.797972' Avg. expression score for this sample: '587.001' Avg. expression score in LCM sample: '335.01' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13630 | GUN5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.21566 x 10-1 | 60 | 37 | 42 | 91 | 61.86% | 68.42% | 97 | 133 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.797972' Avg. expression score for this sample: '409.766' Avg. expression score in LCM sample: '335.01' Tissue used: 'full endosperm' |
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| AT5G13630 | GUN5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 32 | 34 | 9 | 13 | 48.48% | 59.09% | 66 | 22 | TAIR8 |
Avg. embryo expression (dissected): '972.524' Avg. embryo expression (LCM): '501.904' |
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| AT5G13630 | GUN5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.25164 x 10-1 | 6 | 5 | 54.55% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13630 | GUN5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.82483 x 10-1 | 12 | 9 | 57.14% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13630 | GUN5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.0331 x 10-1 | 24 | 10 | 70.59% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G13620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.13458' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.400281' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G13620 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT5G13620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13620 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.09859 x 10-1 | 2 | 3 | 2 | 3 | 40.00% | 60.00% | 5 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.38084' Avg. expression score for this sample: '15.6412' Avg. expression score in LCM sample: '30.7186' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.71919 x 10-1 | 5 | 0 | 1 | 10 | 100.00% | 90.91% | 5 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.38084' Avg. expression score for this sample: '17.6044' Avg. expression score in LCM sample: '30.7186' Tissue used: 'full endosperm' |
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| AT5G13610 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.03188 x 10-1 | 1 | 10 | 2 | 1 | 9.09% | 33.33% | 11 | 3 | TAIR8 |
Avg. embryo expression (dissected): '25.726' Avg. embryo expression (LCM): '34.7245' |
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| AT5G13610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.11617 x 10-1 | 20 | 1 | 95.24% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13610 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 16 | 5 | 76.19% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '211.147' Avg. expression score in LCM sample: '136.867' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '113.397' Avg. expression score in LCM sample: '136.867' Tissue used: 'full endosperm' |
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| AT5G13600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '13.8089' Avg. embryo expression (LCM): '3.54152' |
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| AT5G13600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G13590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 4 | 5 | 13 | 60.00% | 72.22% | 10 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '60.4423' Avg. expression score in LCM sample: '38.6996' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 32 | 14 | 14 | 23 | 69.57% | 62.16% | 46 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '123.19' Avg. expression score in LCM sample: '38.6996' Tissue used: 'full endosperm' |
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| AT5G13590 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 12 | 14 | 5 | 5 | 46.15% | 50.00% | 26 | 10 | TAIR8 |
Avg. embryo expression (dissected): '78.1519' Avg. embryo expression (LCM): '67.8917' |
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| AT5G13590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.26384 x 10-1 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2806 x 10-2 | 18 | 1 | 94.74% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13590 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.1398 x 10-2 | 37 | 7 | 84.09% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G13580 | ABCG6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.102941' Avg. expression score for this sample: '.618078' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G13580 | ABCG6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.02941 x 10-1 | 1 | 0 | 0 | 8 | 100.00% | 100.00% | 1 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.102941' Avg. expression score for this sample: '14.0318' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |