GehringPlant

Gene ID	Tissue	Study	Parent A	Parent B	Stage	Replicate	Replicate Imprinting Status	Overall Imprinting Status	Imprinting p-value	A x B, A counts	A x B, B counts	B x A, A counts	B x A, B counts	% Maternal AxB	% Maternal BxA	Tot Counts AxB	Tot Counts BxA	Genome Assembly	Notes
GRMZM2G041050	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	paternally biased	2.99 x 10^-11	5	31	29	4	13.89%	12.12%	36	33	RefGen V2	χ2 p-value for B73 x Mo17: '1.85e-11' χ2 p-value for Mo17 x B73: '2.99e-11' Biased in favor of strain: ''
GRMZM2G041050	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.929801 x 10^-1	26	30	23	13	46.43%	36.11%	56	36	RefGen V2	χ2 p-value for B73 x Mo17: '.5929801' χ2 p-value for Mo17 x B73: '.0955807' Biased in favor of strain: ''
GRMZM2G041048	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.16 x 10^-5	177	81	130	71	68.60%	35.32%	258	201	RefGen V2	χ2 p-value for B73 x Mo17: '2.28e-09' χ2 p-value for Mo17 x B73: '.0000316' Biased in favor of strain: 'B73'
GRMZM2G041048	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.6108 x 10^-3	167	52	112	74	76.26%	39.78%	219	186	RefGen V2	χ2 p-value for B73 x Mo17: '.0026108' χ2 p-value for Mo17 x B73: '7.42e-15' Biased in favor of strain: 'B73'
GRMZM2G041015	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.803638 x 10^-1	369	182	188	253	66.97%	57.37%	551	441	RefGen V2	χ2 p-value for B73 x Mo17: '.8803638' χ2 p-value for Mo17 x B73: '.0000345' Biased in favor of strain: ''
GRMZM2G041015	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.85112 x 10^-1	56	15	35	47	78.87%	57.32%	71	82	RefGen V2	χ2 p-value for B73 x Mo17: '1.14e-06' χ2 p-value for Mo17 x B73: '.185112' Biased in favor of strain: ''
GRMZM2G040995	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.55003 x 10^-2	692	436	544	480	61.35%	46.88%	1128	1024	RefGen V2	χ2 p-value for B73 x Mo17: '2.49e-14' χ2 p-value for Mo17 x B73: '.0455003' Biased in favor of strain: 'B73'
GRMZM2G040995	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.679 x 10^-4	961	392	555	698	71.03%	55.71%	1353	1253	RefGen V2	χ2 p-value for B73 x Mo17: '.0006679' χ2 p-value for Mo17 x B73: '1.87e-16' Biased in favor of strain: 'B73'
GRMZM2G040991	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.434433 x 10^-1	15	6	18	9	71.43%	33.33%	21	27	RefGen V2	χ2 p-value for B73 x Mo17: '.6434433' χ2 p-value for Mo17 x B73: '.0002386' Biased in favor of strain: ''
GRMZM2G040991	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.443998 x 10^-1	15	8	8	2	65.22%	20.00%	23	10	RefGen V2	χ2 p-value for B73 x Mo17: '.1443998' χ2 p-value for Mo17 x B73: '.0577796' Biased in favor of strain: ''
GRMZM2G040975	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.939 x 10^-4	39	11	35	10	78.00%	22.22%	50	45	RefGen V2	χ2 p-value for B73 x Mo17: '.000075' χ2 p-value for Mo17 x B73: '.0001939' Biased in favor of strain: 'B73'
GRMZM2G040975	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.050419 x 10^-1	42	8	24	31	84.00%	56.36%	50	55	RefGen V2	χ2 p-value for B73 x Mo17: '.0093231' χ2 p-value for Mo17 x B73: '.1050419' Biased in favor of strain: ''
GRMZM2G040970	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.549 x 10^-4	272	87	159	139	75.77%	46.64%	359	298	RefGen V2	χ2 p-value for B73 x Mo17: '.0002549' χ2 p-value for Mo17 x B73: '2.27e-13' Biased in favor of strain: 'B73'
GRMZM2G040970	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.72 x 10^-16	285	107	204	70	72.70%	25.55%	392	274	RefGen V2	χ2 p-value for B73 x Mo17: '2.46e-19' χ2 p-value for Mo17 x B73: '5.72e-16' Biased in favor of strain: 'B73'
GRMZM2G040968	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.29 x 10^-15	233	67	175	54	77.67%	23.58%	300	229	RefGen V2	χ2 p-value for B73 x Mo17: '9.33e-22' χ2 p-value for Mo17 x B73: '1.29e-15' Biased in favor of strain: 'B73'
GRMZM2G040968	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.959648 x 10^-1	25	9	25	32	73.53%	56.14%	34	57	RefGen V2	χ2 p-value for B73 x Mo17: '.3959648' χ2 p-value for Mo17 x B73: '.0918238' Biased in favor of strain: ''
GRMZM2G040965	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.16 x 10^-7	232	54	135	134	81.12%	49.81%	286	269	RefGen V2	χ2 p-value for B73 x Mo17: '2.16e-07' χ2 p-value for Mo17 x B73: '4.54e-09' Biased in favor of strain: 'B73'
GRMZM2G040965	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	407	130	365	110	75.79%	23.16%	537	475	RefGen V2	χ2 p-value for B73 x Mo17: '6.23e-33' χ2 p-value for Mo17 x B73: '1.27e-31' Biased in favor of strain: 'B73'
GRMZM2G040964	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.38 x 10^-21	258	46	188	45	84.87%	19.31%	304	233	RefGen V2	χ2 p-value for B73 x Mo17: '5.14e-34' χ2 p-value for Mo17 x B73: '7.38e-21' Biased in favor of strain: 'B73'
GRMZM2G040964	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.1351 x 10^-3	308	97	221	351	76.05%	61.36%	405	572	RefGen V2	χ2 p-value for B73 x Mo17: '.0000619' χ2 p-value for Mo17 x B73: '.0071351' Biased in favor of strain: 'B73'
GRMZM2G040954	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	PEG	0.0	5	349	680	7	1.41%	1.02%	354	687	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: ''
GRMZM2G040954	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.801373 x 10^-1	301	269	250	217	52.81%	46.47%	570	467	RefGen V2	χ2 p-value for B73 x Mo17: '.1801373' χ2 p-value for Mo17 x B73: '.1267466' Biased in favor of strain: ''
GRMZM2G040947	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		3	8	1	6	27.27%	85.71%	11	7	RefGen V2	χ2 p-value for B73 x Mo17: '.131668' χ2 p-value for Mo17 x B73: '.0587817' Biased in favor of strain: ''
GRMZM2G040947	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		1	4	2	9	20.00%	81.82%	5	11	RefGen V2	χ2 p-value for B73 x Mo17: '.0268555' χ2 p-value for Mo17 x B73: '.2864221' Biased in favor of strain: ''
GRMZM2G040945	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.05 x 10^-9	104	116	62	332	47.27%	84.26%	220	394	RefGen V2	χ2 p-value for B73 x Mo17: '1.05e-09' χ2 p-value for Mo17 x B73: '1.27e-13' Biased in favor of strain: 'Mo17'
GRMZM2G040945	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.233333 x 10^-1	618	565	603	505	52.24%	45.58%	1183	1108	RefGen V2	χ2 p-value for B73 x Mo17: '.1233333' χ2 p-value for Mo17 x B73: '.0032387' Biased in favor of strain: ''
GRMZM2G040933	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	779	344	664	271	69.37%	28.98%	1123	935	RefGen V2	χ2 p-value for B73 x Mo17: '1.57e-38' χ2 p-value for Mo17 x B73: '8.33e-38' Biased in favor of strain: 'B73'
GRMZM2G040933	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.22 x 10^-12	409	94	151	111	81.31%	42.37%	503	262	RefGen V2	χ2 p-value for B73 x Mo17: '3.22e-12' χ2 p-value for Mo17 x B73: '7.19e-17' Biased in favor of strain: 'B73'
GRMZM2G040924	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	0	0			0	0	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G040924	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.668543 x 10^-1	10	6	10	7	62.50%	41.18%	16	17	RefGen V2	χ2 p-value for B73 x Mo17: '.3173105' χ2 p-value for Mo17 x B73: '.4668543' Biased in favor of strain: ''
GRMZM2G040920	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.447 x 10^-4	282	106	179	120	72.68%	40.13%	388	299	RefGen V2	χ2 p-value for B73 x Mo17: '4.07e-19' χ2 p-value for Mo17 x B73: '.0006447' Biased in favor of strain: 'B73'
GRMZM2G040920	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.0426 x 10^-3	270	99	183	230	73.17%	55.69%	369	413	RefGen V2	χ2 p-value for B73 x Mo17: '.0080426' χ2 p-value for Mo17 x B73: '2.22e-06' Biased in favor of strain: 'B73'
GRMZM2G040917	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		1	1	7	4	50.00%	36.36%	2	11	RefGen V2	χ2 p-value for B73 x Mo17: '.6170692' χ2 p-value for Mo17 x B73: '.0330062' Biased in favor of strain: ''
GRMZM2G040917	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		4	2	8	3	66.67%	27.27%	6	11	RefGen V2	χ2 p-value for B73 x Mo17: '.4142162' χ2 p-value for Mo17 x B73: '.131668' Biased in favor of strain: ''
GRMZM2G040911	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.29 x 10^-8	47	119	23	86	28.31%	78.90%	166	109	RefGen V2	χ2 p-value for B73 x Mo17: '2.29e-08' χ2 p-value for Mo17 x B73: '1.60e-09' Biased in favor of strain: 'Mo17'
GRMZM2G040911	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		4	0	2	4	100.00%	66.67%	4	6	RefGen V2	χ2 p-value for B73 x Mo17: '.1573006' χ2 p-value for Mo17 x B73: '.9999999' Biased in favor of strain: ''
GRMZM2G040902	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.34 x 10^-5	52	55	17	114	48.60%	87.02%	107	131	RefGen V2	χ2 p-value for B73 x Mo17: '.0000734' χ2 p-value for Mo17 x B73: '7.72e-07' Biased in favor of strain: 'Mo17'
GRMZM2G040902	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.2038 x 10^-3	65	101	51	110	39.16%	68.32%	166	161	RefGen V2	χ2 p-value for B73 x Mo17: '.0052038' χ2 p-value for Mo17 x B73: '3.32e-06' Biased in favor of strain: 'Mo17'
GRMZM2G040890	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.43122 x 10^-2	117	90	120	93	56.52%	43.66%	207	213	RefGen V2	χ2 p-value for B73 x Mo17: '.0605689' χ2 p-value for Mo17 x B73: '.0643122' Biased in favor of strain: ''
GRMZM2G040890	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.402915 x 10^-1	14	24	3	9	36.84%	75.00%	38	12	RefGen V2	χ2 p-value for B73 x Mo17: '.0000961' χ2 p-value for Mo17 x B73: '.5402915' Biased in favor of strain: ''
GRMZM2G040887	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.140892 x 10^-1	114	43	103	86	72.61%	45.50%	157	189	RefGen V2	χ2 p-value for B73 x Mo17: '.1140892' χ2 p-value for Mo17 x B73: '6.74e-10' Biased in favor of strain: ''
GRMZM2G040887	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.26 x 10^-5	227	143	231	135	61.35%	36.89%	370	366	RefGen V2	χ2 p-value for B73 x Mo17: '.0000126' χ2 p-value for Mo17 x B73: '5.22e-07' Biased in favor of strain: 'B73'
GRMZM2G040878	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.46 x 10^-20	384	166	364	149	69.82%	29.04%	550	513	RefGen V2	χ2 p-value for B73 x Mo17: '1.46e-20' χ2 p-value for Mo17 x B73: '2.26e-21' Biased in favor of strain: 'B73'
GRMZM2G040878	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	403	16	235	20	96.18%	7.84%	419	255	RefGen V2	χ2 p-value for B73 x Mo17: '1.34e-37' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G040876	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	paternally biased	8.16 x 10^-22	202	478	581	680	29.71%	53.93%	680	1261	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '8.16e-22' Biased in favor of strain: ''
GRMZM2G040876	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.483379 x 10^-1	393	575	489	513	40.60%	51.20%	968	1002	RefGen V2	χ2 p-value for B73 x Mo17: '4.92e-09' χ2 p-value for Mo17 x B73: '.4483379' Biased in favor of strain: ''
GRMZM2G040843	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		9	1	3	1	90.00%	25.00%	10	4	RefGen V2	χ2 p-value for B73 x Mo17: '.011412' χ2 p-value for Mo17 x B73: '.3173105' Biased in favor of strain: ''
GRMZM2G040843	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		5	1	0	7	83.33%	100.00%	6	7	RefGen V2	χ2 p-value for B73 x Mo17: '.386481' χ2 p-value for Mo17 x B73: '.0613688' Biased in favor of strain: ''
GRMZM2G040803	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.74 x 10^-7	600	200	386	375	75.00%	49.28%	800	761	RefGen V2	χ2 p-value for B73 x Mo17: '5.74e-07' χ2 p-value for Mo17 x B73: '2.53e-24' Biased in favor of strain: 'B73'
GRMZM2G040803	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.8 x 10^-5	334	157	177	109	68.02%	38.11%	491	286	RefGen V2	χ2 p-value for B73 x Mo17: '1.37e-15' χ2 p-value for Mo17 x B73: '.000058' Biased in favor of strain: 'B73'
GRMZM2G040750	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.6998 x 10^-3	31	2	20	5	93.94%	20.00%	33	25	RefGen V2	χ2 p-value for B73 x Mo17: '4.46e-07' χ2 p-value for Mo17 x B73: '.0026998' Biased in favor of strain: 'B73'
GRMZM2G040750	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		1	1	5	2	50.00%	28.57%	2	7	RefGen V2	χ2 p-value for B73 x Mo17: '.6170692' χ2 p-value for Mo17 x B73: '.0325094' Biased in favor of strain: ''
GRMZM2G040743	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	9.72488 x 10^-2	11	11	24	15	50.00%	38.46%	22	39	RefGen V2	χ2 p-value for B73 x Mo17: '.0972488' χ2 p-value for Mo17 x B73: '.0001866' Biased in favor of strain: ''
GRMZM2G040743	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.136637 x 10^-1	35	37	19	32	48.61%	62.75%	72	51	RefGen V2	χ2 p-value for B73 x Mo17: '.8136637' χ2 p-value for Mo17 x B73: '.0687036' Biased in favor of strain: ''
GRMZM2G040728	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		11	0	1	3	100.00%	75.00%	11	4	RefGen V2	χ2 p-value for B73 x Mo17: '.0009111' χ2 p-value for Mo17 x B73: '.3173105' Biased in favor of strain: ''
GRMZM2G040728	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.2 x 10^-6	52	1	56	24	98.11%	30.00%	53	80	RefGen V2	χ2 p-value for B73 x Mo17: '1.20e-06' χ2 p-value for Mo17 x B73: '3.48e-12' Biased in favor of strain: 'B73'
GRMZM2G040720	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.51146 x 10^-2	332	228	128	319	59.29%	71.36%	560	447	RefGen V2	χ2 p-value for B73 x Mo17: '.0002111' χ2 p-value for Mo17 x B73: '.0351146' Biased in favor of strain: ''
GRMZM2G040720	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.547764 x 10^-1	332	324	259	249	50.61%	49.02%	656	508	RefGen V2	χ2 p-value for B73 x Mo17: '.7547764' χ2 p-value for Mo17 x B73: '.6572752' Biased in favor of strain: ''
GRMZM2G040673	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.912825 x 10^-1	249	226	232	209	52.42%	47.39%	475	441	RefGen V2	χ2 p-value for B73 x Mo17: '.2912825' χ2 p-value for Mo17 x B73: '.2734123' Biased in favor of strain: ''
GRMZM2G040673	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		1	3	3	2	25.00%	40.00%	4	5	RefGen V2	χ2 p-value for B73 x Mo17: '.0770973' χ2 p-value for Mo17 x B73: '.2059032' Biased in favor of strain: ''
GRMZM2G040672	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		16	2	6	2	88.89%	25.00%	18	8	RefGen V2	χ2 p-value for B73 x Mo17: '.0455017' χ2 p-value for Mo17 x B73: '.0124193' Biased in favor of strain: ''
GRMZM2G040672	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.668543 x 10^-1	81	72	82	59	52.94%	41.84%	153	141	RefGen V2	χ2 p-value for B73 x Mo17: '.4668543' χ2 p-value for Mo17 x B73: '.0527515' Biased in favor of strain: ''
GRMZM2G040634	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.595144 x 10^-1	336	192	227	198	63.64%	46.59%	528	425	RefGen V2	χ2 p-value for B73 x Mo17: '3.69e-10' χ2 p-value for Mo17 x B73: '.1595144' Biased in favor of strain: ''
GRMZM2G040634	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.13574 x 10^-1	299	142	156	144	67.80%	48.00%	441	300	RefGen V2	χ2 p-value for B73 x Mo17: '.613574' χ2 p-value for Mo17 x B73: '6.96e-12' Biased in favor of strain: ''
GRMZM2G040630	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	6	4	24	0.00%	85.71%	6	28	RefGen V2	χ2 p-value for B73 x Mo17: '.000532' χ2 p-value for Mo17 x B73: '.0325095' Biased in favor of strain: ''
GRMZM2G040630	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		2	8	4	1	20.00%	20.00%	10	5	RefGen V2	χ2 p-value for B73 x Mo17: '.0577796' χ2 p-value for Mo17 x B73: '.1797125' Biased in favor of strain: ''
GRMZM2G040618	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	670	286	788	287	70.08%	26.70%	956	1075	RefGen V2	χ2 p-value for B73 x Mo17: '2.05e-35' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G040618	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.62 x 10^-5	411	138	272	294	74.86%	51.94%	549	566	RefGen V2	χ2 p-value for B73 x Mo17: '.0000462' χ2 p-value for Mo17 x B73: '1.08e-13' Biased in favor of strain: 'B73'
GRMZM2G040613	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.170409 x 10^-1	63	35	18	66	64.29%	78.57%	98	84	RefGen V2	χ2 p-value for B73 x Mo17: '.6170409' χ2 p-value for Mo17 x B73: '.0206376' Biased in favor of strain: ''
GRMZM2G040613	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.28978 x 10^-1	116	94	122	84	55.24%	40.78%	210	206	RefGen V2	χ2 p-value for B73 x Mo17: '.128978' χ2 p-value for Mo17 x B73: '.0081069' Biased in favor of strain: ''
GRMZM2G040605	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		8	3	1	1	72.73%	50.00%	11	2	RefGen V2	χ2 p-value for B73 x Mo17: '.131668' χ2 p-value for Mo17 x B73: '1' Biased in favor of strain: ''
GRMZM2G040605	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	1	2		66.67%	0	3	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G040587	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.849 x 10^-4	451	336	305	775	57.31%	71.76%	787	1080	RefGen V2	χ2 p-value for B73 x Mo17: '2.54e-08' χ2 p-value for Mo17 x B73: '.0003849' Biased in favor of strain: 'Mo17'
GRMZM2G040587	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.8845 x 10^-2	553	332	372	324	62.49%	46.55%	885	696	RefGen V2	χ2 p-value for B73 x Mo17: '1.10e-13' χ2 p-value for Mo17 x B73: '.068845' Biased in favor of strain: ''
GRMZM2G040561	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.837711 x 10^-1	275	288	281	216	48.85%	43.46%	563	497	RefGen V2	χ2 p-value for B73 x Mo17: '.5837711' χ2 p-value for Mo17 x B73: '.0035495' Biased in favor of strain: ''
GRMZM2G040561	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.391986 x 10^-1	390	212	196	399	64.78%	67.06%	602	595	RefGen V2	χ2 p-value for B73 x Mo17: '.3270944' χ2 p-value for Mo17 x B73: '.8391986' Biased in favor of strain: ''
GRMZM2G040559	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.220944 x 10^-1	167	51	64	100	76.61%	60.98%	218	164	RefGen V2	χ2 p-value for B73 x Mo17: '.0018527' χ2 p-value for Mo17 x B73: '.1220944' Biased in favor of strain: ''
GRMZM2G040559	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.886378 x 10^-1	41	27	26	25	60.29%	49.02%	68	51	RefGen V2	χ2 p-value for B73 x Mo17: '.0895551' χ2 p-value for Mo17 x B73: '.8886378' Biased in favor of strain: ''
GRMZM2G040517	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	15609	3832	17162	3736	80.29%	17.88%	19441	20898	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G040517	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.81 x 10^-26	37	122	21	317	23.27%	93.79%	159	338	RefGen V2	χ2 p-value for B73 x Mo17: '3.75e-31' χ2 p-value for Mo17 x B73: '3.81e-26' Biased in favor of strain: 'Mo17'
GRMZM2G040515	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.14 x 10^-5	716	472	264	723	60.27%	73.25%	1188	987	RefGen V2	χ2 p-value for B73 x Mo17: '2.90e-06' χ2 p-value for Mo17 x B73: '.0000114' Biased in favor of strain: 'Mo17'
GRMZM2G040515	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.30983 x 10^-2	121	70	82	117	63.35%	58.79%	191	199	RefGen V2	χ2 p-value for B73 x Mo17: '.0002241' χ2 p-value for Mo17 x B73: '.0130983' Biased in favor of strain: ''
GRMZM2G040511	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.9944 x 10^-3	459	349	494	405	56.81%	45.05%	808	899	RefGen V2	χ2 p-value for B73 x Mo17: '.0001089' χ2 p-value for Mo17 x B73: '.0029944' Biased in favor of strain: 'B73'
GRMZM2G040511	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.982252 x 10^-1	91	53	33	76	63.19%	69.72%	144	109	RefGen V2	χ2 p-value for B73 x Mo17: '.3767268' χ2 p-value for Mo17 x B73: '.4982252' Biased in favor of strain: ''
GRMZM2G040493	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		7	3	2	6	70.00%	75.00%	10	8	RefGen V2	χ2 p-value for B73 x Mo17: '.8230743' χ2 p-value for Mo17 x B73: '.6170751' Biased in favor of strain: ''
GRMZM2G040493	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.568392 x 10^-1	17	11	21	14	60.71%	40.00%	28	35	RefGen V2	χ2 p-value for B73 x Mo17: '.2568392' χ2 p-value for Mo17 x B73: '.2367236' Biased in favor of strain: ''
GRMZM2G040481	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.655179 x 10^-1	7	16	4	9	30.43%	69.23%	23	13	RefGen V2	χ2 p-value for B73 x Mo17: '.0605689' χ2 p-value for Mo17 x B73: '.1655179' Biased in favor of strain: ''
GRMZM2G040481	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	0	0			0	0	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G040453	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	9.54 x 10^-5	745	146	161	215	83.61%	57.18%	891	376	RefGen V2	χ2 p-value for B73 x Mo17: '7.28e-27' χ2 p-value for Mo17 x B73: '.0000954' Biased in favor of strain: 'B73'
GRMZM2G040453	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.422792 x 10^-1	429	485	334	359	46.94%	51.80%	914	693	RefGen V2	χ2 p-value for B73 x Mo17: '.0639805' χ2 p-value for Mo17 x B73: '.3422792' Biased in favor of strain: ''
GRMZM2G040452	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.804312 x 10^-1	540	354	320	287	60.40%	47.28%	894	607	RefGen V2	χ2 p-value for B73 x Mo17: '4.95e-10' χ2 p-value for Mo17 x B73: '.1804312' Biased in favor of strain: ''
GRMZM2G040452	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	1020	197	442	401	83.81%	47.57%	1217	843	RefGen V2	χ2 p-value for B73 x Mo17: '6.85e-37' χ2 p-value for Mo17 x B73: '6.05e-32' Biased in favor of strain: 'B73'
GRMZM2G040441	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.596535 x 10^-1	42	22	34	62	65.62%	64.58%	64	96	RefGen V2	χ2 p-value for B73 x Mo17: '.8596535' χ2 p-value for Mo17 x B73: '.6650052' Biased in favor of strain: ''
GRMZM2G040441	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.0963 x 10^-3	308	228	272	201	57.46%	42.49%	536	473	RefGen V2	χ2 p-value for B73 x Mo17: '.0005493' χ2 p-value for Mo17 x B73: '.0010963' Biased in favor of strain: 'B73'
GRMZM2G040401	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.86 x 10^-12	557	347	503	244	61.62%	32.66%	904	747	RefGen V2	χ2 p-value for B73 x Mo17: '2.86e-12' χ2 p-value for Mo17 x B73: '2.63e-21' Biased in favor of strain: 'B73'
GRMZM2G040401	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.16 x 10^-10	506	135	247	284	78.94%	53.48%	641	531	RefGen V2	χ2 p-value for B73 x Mo17: '4.36e-11' χ2 p-value for Mo17 x B73: '1.16e-10' Biased in favor of strain: 'B73'
GRMZM2G040397	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.49 x 10^-5	467	157	425	362	74.84%	46.00%	624	787	RefGen V2	χ2 p-value for B73 x Mo17: '.0000149' χ2 p-value for Mo17 x B73: '9.02e-35' Biased in favor of strain: 'B73'
GRMZM2G040397	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.42 x 10^-14	371	150	330	163	71.21%	33.06%	521	493	RefGen V2	χ2 p-value for B73 x Mo17: '3.59e-22' χ2 p-value for Mo17 x B73: '5.42e-14' Biased in favor of strain: 'B73'
GRMZM2G040389	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		1	10	0	1	9.09%	100.00%	11	1	RefGen V2	χ2 p-value for B73 x Mo17: '.0066556' χ2 p-value for Mo17 x B73: '.3173105' Biased in favor of strain: ''
GRMZM2G040389	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		2	0	2	0	100.00%	0.00%	2	2	RefGen V2	χ2 p-value for B73 x Mo17: '.3173122' χ2 p-value for Mo17 x B73: '.0455002' Biased in favor of strain: ''

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