| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G67350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '17.8687' Avg. expression score in LCM sample: '6.14373' Tissue used: 'full endosperm' |
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| AT5G67350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '61.9003' Avg. embryo expression (LCM): '60.9091' |
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| AT5G67350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G67350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G67340 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.8 x 10-9 | 66 | 2 | 97.06% | 68 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.123648' Avg. expression score for this sample: '.647938' Avg. expression score in LCM sample: '.617312' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.23648 x 10-1 | 5 | 13 | 4 | 9 | 27.78% | 69.23% | 18 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.123648' Avg. expression score for this sample: '4.83693' Avg. expression score in LCM sample: '.617312' Tissue used: 'full endosperm' |
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| AT5G67340 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 6 | 1 | 1 | 57.14% | 50.00% | 14 | 2 | TAIR8 |
Avg. embryo expression (dissected): '5.90649' Avg. embryo expression (LCM): '2.61218' |
||||
| AT5G67340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G67340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.8 x 10-6 | 32 | 1 | 96.97% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67330 | NRAMP4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.13633 x 10-1 | 4 | 4 | 1 | 14 | 50.00% | 93.33% | 8 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '110.154' Avg. expression score in LCM sample: '76.2087' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67330 | NRAMP4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.21253 x 10-1 | 6 | 10 | 6 | 21 | 37.50% | 77.78% | 16 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '137.573' Avg. expression score in LCM sample: '76.2087' Tissue used: 'full endosperm' |
||||
| AT5G67330 | NRAMP4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.7337 x 10-1 | 4 | 7 | 4 | 0 | 36.36% | 0.00% | 11 | 4 | TAIR8 |
Avg. embryo expression (dissected): '118.21' Avg. embryo expression (LCM): '63.1822' |
|||
| AT5G67330 | NRAMP4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.08998 x 10-1 | 5 | 3 | 62.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67330 | NRAMP4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.597 x 10-3 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67330 | NRAMP4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.9558 x 10-2 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67320 | HOS15 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2383.58' Avg. expression score in LCM sample: '171.143' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G67320 | HOS15 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2174.07' Avg. expression score in LCM sample: '171.143' Tissue used: 'full endosperm' |
||||||
| AT5G67320 | HOS15 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1446.77' Avg. embryo expression (LCM): '658.923' |
|||||
| AT5G67320 | HOS15 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67320 | HOS15 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67320 | HOS15 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67310 | CYP81G1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.54545 x 10-1 | 5 | 0 | 0 | 1 | 100.00% | 100.00% | 5 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002022' Avg. expression score for this sample: '4.57525' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67310 | CYP81G1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.984 x 10-3 | 43 | 4 | 2 | 9 | 91.49% | 81.82% | 47 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002022' Avg. expression score for this sample: '27.0818' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT5G67310 | CYP81G1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.93064 x 10-1 | 15 | 9 | 0 | 1 | 62.50% | 100.00% | 24 | 1 | TAIR8 |
Avg. embryo expression (dissected): '35.8333' Avg. embryo expression (LCM): '.766073' |
|||
| AT5G67310 | CYP81G1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.07692 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67310 | CYP81G1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67310 | CYP81G1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.72245 x 10-1 | 10 | 3 | 76.92% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67300 | MYBR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.23077 x 10-1 | 5 | 0 | 1 | 2 | 100.00% | 66.67% | 5 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000175' Avg. expression score for this sample: '1453.97' Avg. expression score in LCM sample: '117.789' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67300 | MYBR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.62 x 10-4 | 54 | 5 | 1 | 12 | 91.53% | 92.31% | 59 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000175' Avg. expression score for this sample: '2766.07' Avg. expression score in LCM sample: '117.789' Tissue used: 'full endosperm' |
||||
| AT5G67300 | MYBR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.1362 x 10-2 | 20 | 2 | 1 | 0 | 90.91% | 0.00% | 22 | 1 | TAIR8 |
Avg. embryo expression (dissected): '1990.31' Avg. embryo expression (LCM): '401.322' |
|||
| AT5G67300 | MYBR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.8765 x 10-2 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67300 | MYBR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67300 | MYBR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.73067 x 10-1 | 14 | 3 | 82.35% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 70 | 29 | 53 | 93 | 70.71% | 63.70% | 99 | 146 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.355161' Avg. expression score for this sample: '355.55' Avg. expression score in LCM sample: '200.803' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.01049 x 10-1 | 132 | 30 | 49 | 71 | 81.48% | 59.17% | 162 | 120 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.355161' Avg. expression score for this sample: '550.45' Avg. expression score in LCM sample: '200.803' Tissue used: 'full endosperm' |
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| AT5G67290 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 43 | 43 | 15 | 17 | 50.00% | 53.12% | 86 | 32 | TAIR8 |
Avg. embryo expression (dissected): '282.486' Avg. embryo expression (LCM): '166.816' |
||||
| AT5G67290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.63212 x 10-1 | 41 | 16 | 71.93% | 57 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.0156 x 10-2 | 97 | 60 | 61.78% | 157 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67290 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.6 x 10-17 | 286 | 21 | 93.16% | 307 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67280 | RLK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.64484 x 10-1 | 3 | 4 | 3 | 16 | 42.86% | 84.21% | 7 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.107855' Avg. expression score for this sample: '170.69' Avg. expression score in LCM sample: '37.9647' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67280 | RLK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3502 x 10-1 | 41 | 33 | 31 | 135 | 55.41% | 81.33% | 74 | 166 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.107855' Avg. expression score for this sample: '168.73' Avg. expression score in LCM sample: '37.9647' Tissue used: 'full endosperm' |
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| AT5G67280 | RLK | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.7337 x 10-1 | 2 | 11 | 0 | 2 | 15.38% | 100.00% | 13 | 2 | TAIR8 |
Avg. embryo expression (dissected): '118.789' Avg. embryo expression (LCM): '63.8604' |
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| AT5G67280 | RLK | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 16 | 6 | 72.73% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67280 | RLK | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.8 x 10-10 | 80 | 0 | 100.00% | 80 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67280 | RLK | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-8 | 82 | 1 | 98.80% | 83 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67270 | EB1C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '916.359' Avg. expression score in LCM sample: '784.516' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67270 | EB1C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '568.052' Avg. expression score in LCM sample: '784.516' Tissue used: 'full endosperm' |
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| AT5G67270 | EB1C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '854.38' Avg. embryo expression (LCM): '565.588' |
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| AT5G67270 | EB1C | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67270 | EB1C | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67270 | EB1C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67260 | CYCD3;2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.91071 x 10-1 | 14 | 7 | 5 | 5 | 66.67% | 50.00% | 21 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.34072' Avg. expression score for this sample: '31.9962' Avg. expression score in LCM sample: '36.4655' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67260 | CYCD3;2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.4279 | 11 | 4 | 19 | 20 | 73.33% | 51.28% | 15 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.34072' Avg. expression score for this sample: '38.7908' Avg. expression score in LCM sample: '36.4655' Tissue used: 'full endosperm' |
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| AT5G67260 | CYCD3;2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 37 | 33 | 12 | 8 | 52.86% | 40.00% | 70 | 20 | TAIR8 |
Avg. embryo expression (dissected): '155.722' Avg. embryo expression (LCM): '165.547' |
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| AT5G67260 | CYCD3;2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.1981 x 10-2 | 5 | 10 | 33.33% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67260 | CYCD3;2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.30397 x 10-1 | 17 | 6 | 73.91% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67260 | CYCD3;2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.70644 x 10-1 | 16 | 7 | 69.57% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67250 | SKIP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.37259 x 10-1 | 12 | 12 | 12 | 20 | 50.00% | 62.50% | 24 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.83235' Avg. expression score for this sample: '7517.16' Avg. expression score in LCM sample: '2017.22' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67250 | SKIP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.00771 x 10-1 | 42 | 9 | 36 | 56 | 82.35% | 60.87% | 51 | 92 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.83235' Avg. expression score for this sample: '2936.68' Avg. expression score in LCM sample: '2017.22' Tissue used: 'full endosperm' |
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| AT5G67250 | SKIP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.22393 x 10-1 | 4 | 6 | 3 | 2 | 40.00% | 40.00% | 10 | 5 | TAIR8 |
Avg. embryo expression (dissected): '2325.13' Avg. embryo expression (LCM): '765.043' |
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| AT5G67250 | SKIP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.93001 x 10-1 | 18 | 6 | 75.00% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67250 | SKIP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.06177 x 10-1 | 75 | 35 | 68.18% | 110 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67250 | SKIP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.71322 x 10-1 | 66 | 23 | 74.16% | 89 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67245 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 2 | 0 | 100.00% | 0.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.232242' Avg. expression score for this sample: '11.8761' Avg. expression score in LCM sample: '29.4546' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67245 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.69337 x 10-1 | 77 | 0 | 25 | 0 | 100.00% | 0.00% | 77 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.232242' Avg. expression score for this sample: '61.2609' Avg. expression score in LCM sample: '29.4546' Tissue used: 'full endosperm' |
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| AT5G67245 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.90529 x 10-1 | 11 | 0 | 6 | 0 | 100.00% | 0.00% | 11 | 6 | TAIR8 |
Avg. embryo expression (dissected): '23.4963' Avg. embryo expression (LCM): '57.8825' |
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| AT5G67245 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.61682 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67245 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G67245 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.5 x 10-8 | 79 | 0 | 100.00% | 79 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67240 | SDN3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 3 | 0 | 6 | 40.00% | 100.00% | 5 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.244771' Avg. expression score for this sample: '77.9842' Avg. expression score in LCM sample: '45.3725' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67240 | SDN3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.84368 x 10-1 | 10 | 7 | 5 | 33 | 58.82% | 86.84% | 17 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.244771' Avg. expression score for this sample: '190.652' Avg. expression score in LCM sample: '45.3725' Tissue used: 'full endosperm' |
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| AT5G67240 | SDN3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 7 | 7 | 0 | 1 | 50.00% | 100.00% | 14 | 1 | TAIR8 |
Avg. embryo expression (dissected): '136.033' Avg. embryo expression (LCM): '247.442' |
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| AT5G67240 | SDN3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67240 | SDN3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.78433 x 10-1 | 8 | 6 | 57.14% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67240 | SDN3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.18206 x 10-1 | 35 | 9 | 79.55% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67230 | IRX14-L | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '16.1232' Avg. expression score in LCM sample: '26.7061' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67230 | IRX14-L | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 2 | 1 | 33.33% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '19.5548' Avg. expression score in LCM sample: '26.7061' Tissue used: 'full endosperm' |
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| AT5G67230 | IRX14-L | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '16.5568' Avg. embryo expression (LCM): '22.0654' |
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| AT5G67230 | IRX14-L | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67230 | IRX14-L | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 5 | 61.54% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67230 | IRX14-L | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.85714 x 10-1 | 1 | 1 | 2 | 0 | 50.00% | 0.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.517082' Avg. expression score for this sample: '43.1299' Avg. expression score in LCM sample: '33.1732' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.27386 x 10-1 | 8 | 1 | 1 | 10 | 88.89% | 90.91% | 9 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.517082' Avg. expression score for this sample: '63.7406' Avg. expression score in LCM sample: '33.1732' Tissue used: 'full endosperm' |
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| AT5G67220 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.7337 x 10-1 | 2 | 10 | 2 | 2 | 16.67% | 50.00% | 12 | 4 | TAIR8 |
Avg. embryo expression (dissected): '110.401' Avg. embryo expression (LCM): '165.786' |
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| AT5G67220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.42188 x 10-1 | 35 | 3 | 92.11% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67220 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.09403 x 10-1 | 32 | 15 | 68.09% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67210 | IRX15-L | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.74805' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67210 | IRX15-L | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '28.4179' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G67210 | IRX15-L | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '6.34119' Avg. embryo expression (LCM): '5.19925' |
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| AT5G67210 | IRX15-L | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67210 | IRX15-L | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67210 | IRX15-L | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.15336 x 10-1 | 54 | 19 | 49 | 75 | 73.97% | 60.48% | 73 | 124 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.875736' Avg. expression score for this sample: '62.7233' Avg. expression score in LCM sample: '27.5586' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.52312 x 10-1 | 187 | 54 | 157 | 230 | 77.59% | 59.43% | 241 | 387 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.875736' Avg. expression score for this sample: '115.89' Avg. expression score in LCM sample: '27.5586' Tissue used: 'full endosperm' |
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| AT5G67200 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.42742 x 10-1 | 161 | 132 | 39 | 43 | 54.95% | 52.44% | 293 | 82 | TAIR8 |
Avg. embryo expression (dissected): '177.947' Avg. embryo expression (LCM): '310.084' |
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| AT5G67200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.00511 x 10-1 | 30 | 11 | 73.17% | 41 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.841 x 10-3 | 48 | 8 | 85.71% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67200 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.12 x 10-4 | 155 | 42 | 78.68% | 197 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |