| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G16070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.13319 x 10-1 | 15 | 6 | 71.43% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16070 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.099 x 10-3 | 41 | 5 | 89.13% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '207.938' Avg. expression score in LCM sample: '29.4987' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '189.907' Avg. expression score in LCM sample: '29.4987' Tissue used: 'full endosperm' |
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| AT5G16060 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '421.36' Avg. embryo expression (LCM): '245.219' |
||||||
| AT5G16060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16060 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16050 | GRF5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.99084 x 10-1 | 33 | 1 | 11 | 2 | 97.06% | 15.38% | 34 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.743836' Avg. expression score for this sample: '311.62' Avg. expression score in LCM sample: '221.042' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16050 | GRF5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.12743 x 10-1 | 14 | 2 | 15 | 2 | 87.50% | 11.76% | 16 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.743836' Avg. expression score for this sample: '310.315' Avg. expression score in LCM sample: '221.042' Tissue used: 'full endosperm' |
||||
| AT5G16050 | GRF5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.839 x 10-3 | 39 | 3 | 8 | 1 | 92.86% | 11.11% | 42 | 9 | TAIR8 |
Avg. embryo expression (dissected): '357.773' Avg. embryo expression (LCM): '577.456' |
|||
| AT5G16050 | GRF5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.40018 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16050 | GRF5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.216 x 10-3 | 11 | 21 | 34.38% | 32 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16050 | GRF5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.45 x 10-4 | 38 | 3 | 92.68% | 41 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.87148 x 10-1 | 46 | 18 | 13 | 37 | 71.88% | 74.00% | 64 | 50 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000095' Avg. expression score for this sample: '266.338' Avg. expression score in LCM sample: '42.4182' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.3 x 10-5 | 76 | 21 | 9 | 92 | 78.35% | 91.09% | 97 | 101 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000095' Avg. expression score for this sample: '247.256' Avg. expression score in LCM sample: '42.4182' Tissue used: 'full endosperm' |
|||||
| AT5G16040 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.3585 x 10-1 | 38 | 28 | 9 | 16 | 57.58% | 64.00% | 66 | 25 | TAIR8 |
Avg. embryo expression (dissected): '380.135' Avg. embryo expression (LCM): '301.732' |
||||
| AT5G16040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.7555 x 10-1 | 22 | 2 | 91.67% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.8 x 10-10 | 367 | 17 | 95.57% | 384 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16040 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.9 x 10-12 | 402 | 15 | 96.40% | 417 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.07985 x 10-1 | 7 | 2 | 2 | 6 | 77.78% | 75.00% | 9 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '27.7072' Avg. expression score in LCM sample: '2.36636' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G16030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 1 | 1 | 50.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.81165' Avg. expression score in LCM sample: '2.36636' Tissue used: 'full endosperm' |
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| AT5G16030 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 33 | 36 | 15 | 18 | 47.83% | 54.55% | 69 | 33 | TAIR8 |
Avg. embryo expression (dissected): '236.764' Avg. embryo expression (LCM): '38.3037' |
||||
| AT5G16030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16030 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16023 | RTFL18 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.65429' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G16023 | RTFL18 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 2 | 0 | 0 | 33.33% | 3 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '9.24919' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT5G16023 | RTFL18 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.82051 x 10-1 | 5 | 1 | 0 | 1 | 83.33% | 100.00% | 6 | 1 | TAIR8 |
Avg. embryo expression (dissected): '20.8439' Avg. embryo expression (LCM): '0' |
|||
| AT5G16023 | RTFL18 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16023 | RTFL18 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16023 | RTFL18 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 6 | 40.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16020 | GEX3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16020 | GEX3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G16020 | GEX3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT5G16020 | GEX3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16020 | GEX3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16020 | GEX3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 3 | 0 | 2 | 25.00% | 100.00% | 4 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.425211' Avg. expression score for this sample: '17.8676' Avg. expression score in LCM sample: '4.55635' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.24736 x 10-1 | 17 | 10 | 10 | 10 | 62.96% | 50.00% | 27 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.425211' Avg. expression score for this sample: '75.8161' Avg. expression score in LCM sample: '4.55635' Tissue used: 'full endosperm' |
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| AT5G16010 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.31222 x 10-1 | 1 | 5 | 3 | 0 | 16.67% | 0.00% | 6 | 3 | TAIR8 |
Avg. embryo expression (dissected): '11.3935' Avg. embryo expression (LCM): '19.4784' |
||||
| AT5G16010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.53879 x 10-1 | 6 | 6 | 50.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 4 | 50.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16010 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.6 x 10-5 | 47 | 4 | 92.16% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16000 | NIK1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.1927 x 10-1 | 3 | 0 | 5 | 0 | 100.00% | 0.00% | 3 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.032899' Avg. expression score for this sample: '6.68749' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16000 | NIK1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.9756 x 10-2 | 11 | 0 | 17 | 0 | 100.00% | 0.00% | 11 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.032899' Avg. expression score for this sample: '10.6442' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G16000 | NIK1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.1 x 10-6 | 71 | 0 | 12 | 0 | 100.00% | 0.00% | 71 | 12 | TAIR8 |
Avg. embryo expression (dissected): '103.714' Avg. embryo expression (LCM): '71.6341' |
|||
| AT5G16000 | NIK1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16000 | NIK1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.3076 x 10-2 | 0 | 6 | 0.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16000 | NIK1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.2 x 10-9 | 35 | 0 | 100.00% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G15980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.59174 x 10-1 | 162 | 84 | 100 | 152 | 65.85% | 60.32% | 246 | 252 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01173' Avg. expression score for this sample: '61.4814' Avg. expression score in LCM sample: '56.146' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G15980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0008 | 764 | 243 | 442 | 931 | 75.87% | 67.81% | 1007 | 1373 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01173' Avg. expression score for this sample: '201.838' Avg. expression score in LCM sample: '56.146' Tissue used: 'full endosperm' |
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| AT5G15980 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.3882 x 10-1 | 314 | 409 | 92 | 121 | 43.43% | 56.81% | 723 | 213 | TAIR8 |
Avg. embryo expression (dissected): '164.723' Avg. embryo expression (LCM): '361.574' |
||||
| AT5G15980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.46827 x 10-1 | 204 | 89 | 69.62% | 293 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.5 x 10-11 | 1039 | 270 | 79.37% | 1309 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15980 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-21 | 1556 | 343 | 81.94% | 1899 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15970 | KIN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G15970 | KIN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '7.35786' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G15970 | KIN2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.60387' Avg. embryo expression (LCM): '0' |
|||||
| AT5G15970 | KIN2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15970 | KIN2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15970 | KIN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15960 | KIN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '12.7323' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G15960 | KIN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '16.0883' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT5G15960 | KIN1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '11.4662' Avg. embryo expression (LCM): '0' |
|||||
| AT5G15960 | KIN1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15960 | KIN1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G15960 | KIN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 25 | 39 | 9 | 71 | 39.06% | 88.75% | 64 | 80 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '79.5803' Avg. expression score in LCM sample: '20.5036' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G15950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 25 | 45 | 13 | 93 | 35.71% | 87.74% | 70 | 106 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '83.3188' Avg. expression score in LCM sample: '20.5036' Tissue used: 'full endosperm' |
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| AT5G15950 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.9232 x 10-2 | 69 | 131 | 16 | 29 | 34.50% | 64.44% | 200 | 45 | TAIR8 |
Avg. embryo expression (dissected): '167.526' Avg. embryo expression (LCM): '129.805' |
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| AT5G15950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.146 x 10-3 | 22 | 1 | 95.65% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 x 10-8 | 98 | 7 | 93.33% | 105 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15950 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.1963 x 10-2 | 30 | 25 | 54.55% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15948 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.8689 x 10-1 | 19 | 32 | 9 | 37 | 37.25% | 80.43% | 51 | 46 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.923593' Avg. expression score for this sample: '58.6554' Avg. expression score in LCM sample: '23.502' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G15948 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.48491 x 10-1 | 16 | 29 | 13 | 88 | 35.56% | 87.13% | 45 | 101 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.923593' Avg. expression score for this sample: '69.5308' Avg. expression score in LCM sample: '23.502' Tissue used: 'full endosperm' |
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| AT5G15948 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.86869 x 10-1 | 41 | 75 | 7 | 17 | 35.34% | 70.83% | 116 | 24 | TAIR8 |
Avg. embryo expression (dissected): '112.561' Avg. embryo expression (LCM): '114.308' |
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| AT5G15948 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.3789 x 10-1 | 14 | 4 | 77.78% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15948 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.5 x 10-7 | 102 | 11 | 90.27% | 113 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15948 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.87833 x 10-1 | 40 | 27 | 59.70% | 67 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 1 | 5 | 4 | 83.33% | 44.44% | 6 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '14.5071' Avg. expression score in LCM sample: '16.5205' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 20 | 2 | 12 | 9 | 90.91% | 42.86% | 22 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '19.2855' Avg. expression score in LCM sample: '16.5205' Tissue used: 'full endosperm' |
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| AT5G15940 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.15152 x 10-1 | 13 | 2 | 4 | 3 | 86.67% | 42.86% | 15 | 7 | TAIR8 |
Avg. embryo expression (dissected): '38.8523' Avg. embryo expression (LCM): '26.2097' |
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| AT5G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.45325 x 10-1 | 2 | 3 | 40.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.80842 x 10-1 | 8 | 2 | 80.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G15930 | PAM1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.69185 x 10-1 | 22 | 10 | 9 | 30 | 68.75% | 76.92% | 32 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005089' Avg. expression score for this sample: '44.4196' Avg. expression score in LCM sample: '28.0289' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G15930 | PAM1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.571 x 10-3 | 35 | 12 | 7 | 63 | 74.47% | 90.00% | 47 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005089' Avg. expression score for this sample: '64.5241' Avg. expression score in LCM sample: '28.0289' Tissue used: 'full endosperm' |
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| AT5G15930 | PAM1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 9 | 14 | 2 | 6 | 39.13% | 75.00% | 23 | 8 | TAIR8 |
Avg. embryo expression (dissected): '31.0985' Avg. embryo expression (LCM): '16.5145' |
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| AT5G15930 | PAM1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.5503 x 10-1 | 14 | 5 | 73.68% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G15930 | PAM1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.15853 x 10-1 | 58 | 19 | 75.32% | 77 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G15930 | PAM1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.08282 x 10-1 | 93 | 15 | 86.11% | 108 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G15920 | SMC5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.53808 x 10-1 | 161 | 48 | 81 | 118 | 77.03% | 59.30% | 209 | 199 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.043234' Avg. expression score for this sample: '129.116' Avg. expression score in LCM sample: '54.3088' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G15920 | SMC5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.2662 x 10-2 | 328 | 66 | 143 | 207 | 83.25% | 59.14% | 394 | 350 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.043234' Avg. expression score for this sample: '219.284' Avg. expression score in LCM sample: '54.3088' Tissue used: 'full endosperm' |
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| AT5G15920 | SMC5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.15333 x 10-1 | 97 | 56 | 31 | 23 | 63.40% | 42.59% | 153 | 54 | TAIR8 |
Avg. embryo expression (dissected): '103.267' Avg. embryo expression (LCM): '90.8864' |
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| AT5G15920 | SMC5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.04698 x 10-1 | 23 | 11 | 67.65% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G15920 | SMC5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.26991 x 10-1 | 109 | 59 | 64.88% | 168 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G15920 | SMC5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.3 x 10-27 | 361 | 19 | 95.00% | 380 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G15910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 13 | 5 | 6 | 8 | 72.22% | 57.14% | 18 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.232687' Avg. expression score for this sample: '216.036' Avg. expression score in LCM sample: '56.6311' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G15910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.89761 x 10-1 | 57 | 19 | 25 | 68 | 75.00% | 73.12% | 76 | 93 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.232687' Avg. expression score for this sample: '407.92' Avg. expression score in LCM sample: '56.6311' Tissue used: 'full endosperm' |