| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G16370 | AAE5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 2 | 1 | 1 | 33.33% | 50.00% | 3 | 2 | TAIR8 |
Avg. embryo expression (dissected): '1074.72' Avg. embryo expression (LCM): '380.839' |
|||
| AT5G16370 | AAE5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16370 | AAE5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.76471 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16370 | AAE5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 3 | 1 | 2 | 66.67% | 66.67% | 9 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.826767' Avg. expression score for this sample: '289.71' Avg. expression score in LCM sample: '11.9347' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.9965 x 10-1 | 10 | 4 | 6 | 17 | 71.43% | 73.91% | 14 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.826767' Avg. expression score for this sample: '205.516' Avg. expression score in LCM sample: '11.9347' Tissue used: 'full endosperm' |
|||||
| AT5G16360 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '28.8708' Avg. embryo expression (LCM): '1.13027' |
||||||
| AT5G16360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.2655 x 10-1 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.01243 x 10-1 | 17 | 2 | 89.47% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16360 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 5 | 70.59% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.24541 x 10-1 | 35 | 11 | 21 | 3 | 76.09% | 12.50% | 46 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.012042' Avg. expression score for this sample: '14.9963' Avg. expression score in LCM sample: '33.8346' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G16350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4801 x 10-2 | 3 | 4 | 12 | 3 | 42.86% | 20.00% | 7 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.012042' Avg. expression score for this sample: '2.59758' Avg. expression score in LCM sample: '33.8346' Tissue used: 'full endosperm' |
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| AT5G16350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 3 | 0 | 0 | 0 | 100.00% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.879229' Avg. embryo expression (LCM): '0' |
|||||
| AT5G16350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.83871 x 10-1 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6811 x 10-2 | 17 | 5 | 77.27% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.68054 x 10-1 | 2 | 7 | 0 | 19 | 22.22% | 100.00% | 9 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.282283' Avg. expression score for this sample: '239.289' Avg. expression score in LCM sample: '188.075' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G16340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.30769 x 10-1 | 0 | 0 | 0 | 7 | 100.00% | 0 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.282283' Avg. expression score for this sample: '139.486' Avg. expression score in LCM sample: '188.075' Tissue used: 'full endosperm' |
||||||
| AT5G16340 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '87.8696' Avg. embryo expression (LCM): '24.2506' |
|||||
| AT5G16340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16340 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G16330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.95299' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G16330 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G16330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16330 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16320 | FRL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 28 | 2 | 15 | 5 | 93.33% | 25.00% | 30 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.091628' Avg. expression score for this sample: '42.2154' Avg. expression score in LCM sample: '69.7563' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G16320 | FRL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.8911 x 10-2 | 70 | 1 | 23 | 24 | 98.59% | 51.06% | 71 | 47 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.091628' Avg. expression score for this sample: '67.5617' Avg. expression score in LCM sample: '69.7563' Tissue used: 'full endosperm' |
||||
| AT5G16320 | FRL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.70713 x 10-1 | 19 | 3 | 5 | 1 | 86.36% | 16.67% | 22 | 6 | TAIR8 |
Avg. embryo expression (dissected): '33.477' Avg. embryo expression (LCM): '56.3001' |
|||
| AT5G16320 | FRL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 2 | 75.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16320 | FRL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 37 | 187 | 16.52% | 224 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16320 | FRL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.4 x 10-11 | 289 | 12 | 96.01% | 301 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16310 | UCH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 0 | 1 | 1 | 100.00% | 50.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '41.6729' Avg. expression score in LCM sample: '17.7992' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16310 | UCH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.37186 x 10-1 | 1 | 2 | 3 | 3 | 33.33% | 50.00% | 3 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '42.3169' Avg. expression score in LCM sample: '17.7992' Tissue used: 'full endosperm' |
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| AT5G16310 | UCH1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 1 | 1 | 0 | 80.00% | 0.00% | 5 | 1 | TAIR8 |
Avg. embryo expression (dissected): '34.5386' Avg. embryo expression (LCM): '56.0866' |
|||
| AT5G16310 | UCH1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16310 | UCH1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 4 | 60.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16310 | UCH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.5436 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16300 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.75516 x 10-1 | 43 | 16 | 17 | 56 | 72.88% | 76.71% | 59 | 73 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.04155' Avg. expression score for this sample: '121.622' Avg. expression score in LCM sample: '143.275' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16300 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.62848 x 10-1 | 50 | 15 | 23 | 62 | 76.92% | 72.94% | 65 | 85 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.04155' Avg. expression score for this sample: '191.354' Avg. expression score in LCM sample: '143.275' Tissue used: 'full endosperm' |
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| AT5G16300 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 41 | 37 | 13 | 7 | 52.56% | 35.00% | 78 | 20 | TAIR8 |
Avg. embryo expression (dissected): '127.958' Avg. embryo expression (LCM): '100.921' |
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| AT5G16300 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.81446 x 10-1 | 16 | 3 | 84.21% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16300 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.9501 x 10-2 | 150 | 80 | 65.22% | 230 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16300 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-5 | 211 | 24 | 89.79% | 235 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16290 | VAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '34.3047' Avg. expression score in LCM sample: '25.4421' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16290 | VAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '48.2768' Avg. expression score in LCM sample: '25.4421' Tissue used: 'full endosperm' |
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| AT5G16290 | VAT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '66.5782' Avg. embryo expression (LCM): '98.8737' |
|||||
| AT5G16290 | VAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16290 | VAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16290 | VAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16286 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16286 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G16286 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G16286 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16286 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16286 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16285 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16285 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G16285 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G16285 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16285 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16285 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G16280 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.60863 x 10-1 | 101 | 59 | 41 | 134 | 63.12% | 76.57% | 160 | 175 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001704' Avg. expression score for this sample: '56.1885' Avg. expression score in LCM sample: '49.7671' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16280 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.317 x 10-3 | 146 | 74 | 65 | 283 | 66.36% | 81.32% | 220 | 348 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001704' Avg. expression score for this sample: '66.2351' Avg. expression score in LCM sample: '49.7671' Tissue used: 'full endosperm' |
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| AT5G16280 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.01134 x 10-1 | 79 | 114 | 34 | 43 | 40.93% | 55.84% | 193 | 77 | TAIR8 |
Avg. embryo expression (dissected): '57.4615' Avg. embryo expression (LCM): '56.501' |
||||
| AT5G16280 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.147 x 10-3 | 80 | 11 | 87.91% | 91 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16280 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.8 x 10-5 | 460 | 95 | 82.88% | 555 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16280 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-14 | 479 | 54 | 89.87% | 533 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16270 | SYN4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.24674 x 10-1 | 645 | 296 | 363 | 749 | 68.54% | 67.36% | 941 | 1112 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '9.0e-18' Avg. expression score for this sample: '310.676' Avg. expression score in LCM sample: '127.651' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16270 | SYN4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.3 x 10-23 | 1404 | 450 | 603 | 1969 | 75.73% | 76.56% | 1854 | 2572 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '9.0e-18' Avg. expression score for this sample: '468.153' Avg. expression score in LCM sample: '127.651' Tissue used: 'full endosperm' |
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| AT5G16270 | SYN4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.12831 x 10-1 | 619 | 603 | 263 | 263 | 50.65% | 50.00% | 1222 | 526 | TAIR8 |
Avg. embryo expression (dissected): '454.116' Avg. embryo expression (LCM): '276.264' |
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| AT5G16270 | SYN4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-6 | 425 | 88 | 82.85% | 513 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16270 | SYN4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1123 | 81 | 93.27% | 1204 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16270 | SYN4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 2011 | 111 | 94.77% | 2122 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16260 | ELF9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.32965 x 10-1 | 93 | 66 | 47 | 155 | 58.49% | 76.73% | 159 | 202 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.015349' Avg. expression score for this sample: '183.621' Avg. expression score in LCM sample: '59.6294' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16260 | ELF9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0106 | 238 | 97 | 122 | 344 | 71.04% | 73.82% | 335 | 466 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.015349' Avg. expression score for this sample: '206.121' Avg. expression score in LCM sample: '59.6294' Tissue used: 'full endosperm' |
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| AT5G16260 | ELF9 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.05227 x 10-1 | 123 | 113 | 30 | 53 | 52.12% | 63.86% | 236 | 83 | TAIR8 |
Avg. embryo expression (dissected): '238.287' Avg. embryo expression (LCM): '156.668' |
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| AT5G16260 | ELF9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.6726 x 10-2 | 71 | 16 | 81.61% | 87 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16260 | ELF9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.86592 x 10-1 | 445 | 157 | 73.92% | 602 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16260 | ELF9 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 x 10-14 | 490 | 69 | 87.66% | 559 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G16250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.78168 x 10-1 | 5833 | 2905 | 2155 | 4109 | 66.75% | 65.60% | 8738 | 6264 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003002' Avg. expression score for this sample: '5302.92' Avg. expression score in LCM sample: '7148.07' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.17 x 10-4 | 3480 | 2370 | 3268 | 6921 | 59.49% | 67.93% | 5850 | 10189 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003002' Avg. expression score for this sample: '3401.14' Avg. expression score in LCM sample: '7148.07' Tissue used: 'full endosperm' |
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| AT5G16250 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.54 x 10-3 | 5594 | 5359 | 933 | 1187 | 51.07% | 55.99% | 10953 | 2120 | TAIR8 |
Avg. embryo expression (dissected): '6335.15' Avg. embryo expression (LCM): '4399.9' |
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| AT5G16250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.13484 x 10-1 | 547 | 296 | 64.89% | 843 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.8623 x 10-2 | 162 | 114 | 58.70% | 276 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16250 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-11 | 599 | 481 | 55.46% | 1080 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.1492 x 10-1 | 214 | 57 | 128 | 124 | 78.97% | 49.21% | 271 | 252 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.4017' Avg. expression score for this sample: '148.497' Avg. expression score in LCM sample: '105.237' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.90392 x 10-1 | 402 | 81 | 367 | 452 | 83.23% | 55.19% | 483 | 819 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.4017' Avg. expression score for this sample: '190.956' Avg. expression score in LCM sample: '105.237' Tissue used: 'full endosperm' |
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| AT5G16240 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.1511 x 10-1 | 267 | 281 | 74 | 82 | 48.72% | 52.56% | 548 | 156 | TAIR8 |
Avg. embryo expression (dissected): '295.308' Avg. embryo expression (LCM): '206.513' |
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| AT5G16240 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.25555 x 10-1 | 24 | 18 | 57.14% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16240 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.5 x 10-7 | 166 | 36 | 82.18% | 202 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16240 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 443 | 33 | 93.07% | 476 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16235 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 35 | 13 | 19 | 27 | 72.92% | 58.70% | 48 | 46 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.643391' Avg. expression score for this sample: '180.052' Avg. expression score in LCM sample: '14.595' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G16235 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.43553 x 10-1 | 56 | 41 | 19 | 48 | 57.73% | 71.64% | 97 | 67 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.643391' Avg. expression score for this sample: '198.59' Avg. expression score in LCM sample: '14.595' Tissue used: 'full endosperm' |
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| AT5G16235 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.28571 x 10-1 | 0 | 1 | 3 | 0 | 0.00% | 0.00% | 1 | 3 | TAIR8 |
Avg. embryo expression (dissected): '12.7441' Avg. embryo expression (LCM): '0' |
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| AT5G16235 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 18 | 9 | 66.67% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16235 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.40956 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G16235 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |