GehringPlant

Gene ID	Tissue	Study	Parent A	Parent B	Stage	Replicate	Replicate Imprinting Status	Overall Imprinting Status	Imprinting p-value	A x B, A counts	A x B, B counts	B x A, A counts	B x A, B counts	% Maternal AxB	% Maternal BxA	Tot Counts AxB	Tot Counts BxA	Genome Assembly	Notes
GRMZM2G045686	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.93 x 10^-23	193	0	120	2	100.00%	1.64%	193	122	RefGen V2	χ2 p-value for B73 x Mo17: '8.93e-23' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G045686	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.46 x 10^-12	59	1	52	1	98.33%	1.89%	60	53	RefGen V2	χ2 p-value for B73 x Mo17: '7.01e-14' χ2 p-value for Mo17 x B73: '2.46e-12' Biased in favor of strain: 'B73'
GRMZM2G045678	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.14 x 10^-5	92	39	58	21	70.23%	26.58%	131	79	RefGen V2	χ2 p-value for B73 x Mo17: '3.65e-06' χ2 p-value for Mo17 x B73: '.0000314' Biased in favor of strain: 'B73'
GRMZM2G045678	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	0	0			0	0	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G045675	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		1	2	3	6	33.33%	66.67%	3	9	RefGen V2	χ2 p-value for B73 x Mo17: '.2206667' χ2 p-value for Mo17 x B73: '.9999999' Biased in favor of strain: ''
GRMZM2G045675	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.97 x 10^-7	11	53	8	44	17.19%	84.62%	64	52	RefGen V2	χ2 p-value for B73 x Mo17: '1.52e-07' χ2 p-value for Mo17 x B73: '5.97e-07' Biased in favor of strain: 'Mo17'
GRMZM2G045668	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.08054 x 10^-2	156	96	115	86	61.90%	42.79%	252	201	RefGen V2	χ2 p-value for B73 x Mo17: '.0001571' χ2 p-value for Mo17 x B73: '.0408054' Biased in favor of strain: 'B73'
GRMZM2G045668	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.33301 x 10^-2	110	34	96	73	76.39%	43.20%	144	169	RefGen V2	χ2 p-value for B73 x Mo17: '.0133301' χ2 p-value for Mo17 x B73: '9.62e-11' Biased in favor of strain: ''
GRMZM2G045664	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.01 x 10^-14	718	122	242	243	85.48%	50.10%	840	485	RefGen V2	χ2 p-value for B73 x Mo17: '6.25e-31' χ2 p-value for Mo17 x B73: '1.01e-14' Biased in favor of strain: 'B73'
GRMZM2G045664	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.66201 x 10^-2	565	430	302	359	56.78%	54.31%	995	661	RefGen V2	χ2 p-value for B73 x Mo17: '.0000187' χ2 p-value for Mo17 x B73: '.0266201' Biased in favor of strain: ''
GRMZM2G045645	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.33 x 10^-5	0	32	0	16	0.00%	100.00%	32	16	RefGen V2	χ2 p-value for B73 x Mo17: '1.54e-08' χ2 p-value for Mo17 x B73: '.0000633' Biased in favor of strain: 'Mo17'
GRMZM2G045645	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	0	0			0	0	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G045638	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		2	0	20	32	100.00%	61.54%	2	52	RefGen V2	χ2 p-value for B73 x Mo17: '.3173122' χ2 p-value for Mo17 x B73: '.4327674' Biased in favor of strain: ''
GRMZM2G045638	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		4	0	15	23	100.00%	60.53%	4	38	RefGen V2	χ2 p-value for B73 x Mo17: '.0455003' χ2 p-value for Mo17 x B73: '.1943659' Biased in favor of strain: ''
GRMZM2G045596	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.967056 x 10^-1	73	28	35	25	72.28%	41.67%	101	60	RefGen V2	χ2 p-value for B73 x Mo17: '7.55e-06' χ2 p-value for Mo17 x B73: '.1967056' Biased in favor of strain: ''
GRMZM2G045596	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	9.252731 x 10^-1	152	75	94	193	66.96%	67.25%	227	287	RefGen V2	χ2 p-value for B73 x Mo17: '.9252731' χ2 p-value for Mo17 x B73: '.8346862' Biased in favor of strain: ''
GRMZM2G045581	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.396493 x 10^-1	28	3	15	18	90.32%	54.55%	31	33	RefGen V2	χ2 p-value for B73 x Mo17: '.0052063' χ2 p-value for Mo17 x B73: '.1396493' Biased in favor of strain: ''
GRMZM2G045581	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.55003 x 10^-2	15	4	12	4	78.95%	25.00%	19	16	RefGen V2	χ2 p-value for B73 x Mo17: '.0116169' χ2 p-value for Mo17 x B73: '.0455003' Biased in favor of strain: 'B73'
GRMZM2G045568	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		2	1	2	0	66.67%	0.00%	3	2	RefGen V2	χ2 p-value for B73 x Mo17: '.5637029' χ2 p-value for Mo17 x B73: '.1572992' Biased in favor of strain: ''
GRMZM2G045568	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	0	0			0	0	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G045560	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		35	1	3	0	97.22%	0.00%	36	3	RefGen V2	χ2 p-value for B73 x Mo17: '.0001006' χ2 p-value for Mo17 x B73: '.0143059' Biased in favor of strain: ''
GRMZM2G045560	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		6	0	5	0	100.00%	0.00%	6	5	RefGen V2	χ2 p-value for B73 x Mo17: '.0143059' χ2 p-value for Mo17 x B73: '.0253473' Biased in favor of strain: ''
GRMZM2G045544	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.796682 x 10^-1	87	71	59	56	55.06%	48.70%	158	115	RefGen V2	χ2 p-value for B73 x Mo17: '.2030565' χ2 p-value for Mo17 x B73: '.7796682' Biased in favor of strain: ''
GRMZM2G045544	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.433966 x 10^-1	27	15	39	46	64.29%	54.12%	42	85	RefGen V2	χ2 p-value for B73 x Mo17: '.7433966' χ2 p-value for Mo17 x B73: '.0141164' Biased in favor of strain: ''
GRMZM2G045518	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.691383 x 10^-1	25	7	12	14	78.12%	53.85%	32	26	RefGen V2	χ2 p-value for B73 x Mo17: '.1691383' χ2 p-value for Mo17 x B73: '.1655178' Biased in favor of strain: ''
GRMZM2G045518	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.170751 x 10^-1	19	11	9	7	63.33%	43.75%	30	16	RefGen V2	χ2 p-value for B73 x Mo17: '.144127' χ2 p-value for Mo17 x B73: '.6170751' Biased in favor of strain: ''
GRMZM2G045507	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.399 x 10^-4	384	221	279	196	63.47%	41.26%	605	475	RefGen V2	χ2 p-value for B73 x Mo17: '3.43e-11' χ2 p-value for Mo17 x B73: '.0001399' Biased in favor of strain: 'B73'
GRMZM2G045507	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.8 x 10^-8	214	46	175	39	82.31%	18.22%	260	214	RefGen V2	χ2 p-value for B73 x Mo17: '8.80e-08' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G045503	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	paternally biased	0.0	54	392	580	193	12.11%	24.97%	446	773	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: ''
GRMZM2G045503	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.742834 x 10^-1	364	349	364	261	51.05%	41.76%	713	625	RefGen V2	χ2 p-value for B73 x Mo17: '.5742834' χ2 p-value for Mo17 x B73: '.0000379' Biased in favor of strain: ''
GRMZM2G045467	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		6	4	4	0	60.00%	0.00%	10	4	RefGen V2	χ2 p-value for B73 x Mo17: '.5270892' χ2 p-value for Mo17 x B73: '.0455003' Biased in favor of strain: ''
GRMZM2G045467	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		6	1	10	4	85.71%	28.57%	7	14	RefGen V2	χ2 p-value for B73 x Mo17: '.2850535' χ2 p-value for Mo17 x B73: '.0024969' Biased in favor of strain: ''
GRMZM2G045435	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.174324 x 10^-1	227	130	138	300	63.59%	68.49%	357	438	RefGen V2	χ2 p-value for B73 x Mo17: '.2167979' χ2 p-value for Mo17 x B73: '.4174324' Biased in favor of strain: ''
GRMZM2G045435	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.218394 x 10^-1	82	74	82	124	52.56%	60.19%	156	206	RefGen V2	χ2 p-value for B73 x Mo17: '.5218394' χ2 p-value for Mo17 x B73: '.0034304' Biased in favor of strain: ''
GRMZM2G045433	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.47 x 10^-13	324	162	287	139	66.67%	32.63%	486	426	RefGen V2	χ2 p-value for B73 x Mo17: '2.00e-13' χ2 p-value for Mo17 x B73: '7.47e-13' Biased in favor of strain: 'B73'
GRMZM2G045433	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.96 x 10^-11	398	97	239	224	80.40%	48.38%	495	463	RefGen V2	χ2 p-value for B73 x Mo17: '8.96e-11' χ2 p-value for Mo17 x B73: '7.00e-17' Biased in favor of strain: 'B73'
GRMZM2G045404	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.03 x 10^-7	705	237	391	444	74.84%	53.17%	942	835	RefGen V2	χ2 p-value for B73 x Mo17: '1.03e-07' χ2 p-value for Mo17 x B73: '1.33e-16' Biased in favor of strain: 'B73'
GRMZM2G045404	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.601 x 10^-4	444	284	386	288	60.99%	42.73%	728	674	RefGen V2	χ2 p-value for B73 x Mo17: '3.03e-09' χ2 p-value for Mo17 x B73: '.0001601' Biased in favor of strain: 'B73'
GRMZM2G045398	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		4	1	2	9	80.00%	81.82%	5	11	RefGen V2	χ2 p-value for B73 x Mo17: '.1797125' χ2 p-value for Mo17 x B73: '.0348085' Biased in favor of strain: ''
GRMZM2G045398	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.9247 x 10^-2	17	17	0	22	50.00%	100.00%	34	22	RefGen V2	χ2 p-value for B73 x Mo17: '.039247' χ2 p-value for Mo17 x B73: '.0009111' Biased in favor of strain: ''
GRMZM2G045392	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	0	1		100.00%	0	1	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G045392	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		3	0	0	1	100.00%	100.00%	3	1	RefGen V2	χ2 p-value for B73 x Mo17: '.0832645' χ2 p-value for Mo17 x B73: '.3173105' Biased in favor of strain: ''
GRMZM2G045371	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.348774 x 10^-1	688	631	664	708	52.16%	51.60%	1319	1372	RefGen V2	χ2 p-value for B73 x Mo17: '.1165389' χ2 p-value for Mo17 x B73: '.2348774' Biased in favor of strain: ''
GRMZM2G045371	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.82 x 10^-13	262	409	281	911	39.05%	76.43%	671	1192	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '8.82e-13' Biased in favor of strain: 'Mo17'
GRMZM2G045366	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.4519 x 10^-3	415	158	258	308	72.43%	54.42%	573	566	RefGen V2	χ2 p-value for B73 x Mo17: '.0034519' χ2 p-value for Mo17 x B73: '6.32e-10' Biased in favor of strain: 'B73'
GRMZM2G045366	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.03 x 10^-7	257	136	236	138	65.39%	36.90%	393	374	RefGen V2	χ2 p-value for B73 x Mo17: '1.04e-09' χ2 p-value for Mo17 x B73: '4.03e-07' Biased in favor of strain: 'B73'
GRMZM2G045331	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.891565 x 10^-1	652	423	456	444	60.65%	49.33%	1075	900	RefGen V2	χ2 p-value for B73 x Mo17: '2.86e-12' χ2 p-value for Mo17 x B73: '.6891565' Biased in favor of strain: ''
GRMZM2G045331	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.721815 x 10^-1	695	327	449	869	68.00%	65.93%	1022	1318	RefGen V2	χ2 p-value for B73 x Mo17: '.3645559' χ2 p-value for Mo17 x B73: '.5721815' Biased in favor of strain: ''
GRMZM2G045330	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.507 x 10^-4	176	50	81	83	77.88%	50.61%	226	164	RefGen V2	χ2 p-value for B73 x Mo17: '.0003507' χ2 p-value for Mo17 x B73: '.0000129' Biased in favor of strain: 'B73'
GRMZM2G045330	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.531153 x 10^-1	239	202	205	196	54.20%	48.88%	441	401	RefGen V2	χ2 p-value for B73 x Mo17: '.0780854' χ2 p-value for Mo17 x B73: '.6531153' Biased in favor of strain: ''
GRMZM2G045318	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	1623	431	1214	572	79.02%	32.03%	2054	1786	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G045318	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	9608	2278	5054	4676	80.83%	48.06%	11886	9730	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G045314	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		2	0	5	0	100.00%	0.00%	2	5	RefGen V2	χ2 p-value for B73 x Mo17: '.3173122' χ2 p-value for Mo17 x B73: '.0015654' Biased in favor of strain: ''
GRMZM2G045314	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		2	0	1	0	100.00%	0.00%	2	1	RefGen V2	χ2 p-value for B73 x Mo17: '.1572992' χ2 p-value for Mo17 x B73: '.3173105' Biased in favor of strain: ''
GRMZM2G045287	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.010594 x 10^-1	126	147	128	124	46.15%	49.21%	273	252	RefGen V2	χ2 p-value for B73 x Mo17: '.2037365' χ2 p-value for Mo17 x B73: '.8010594' Biased in favor of strain: ''
GRMZM2G045287	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.709034 x 10^-1	29	22	25	35	56.86%	58.33%	51	60	RefGen V2	χ2 p-value for B73 x Mo17: '.1374749' χ2 p-value for Mo17 x B73: '.1709034' Biased in favor of strain: ''
GRMZM2G045280	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	paternally biased	2.846 x 10^-4	128	103	103	100	55.41%	49.26%	231	203	RefGen V2	χ2 p-value for B73 x Mo17: '.0002846' χ2 p-value for Mo17 x B73: '1.44e-07' Biased in favor of strain: ''
GRMZM2G045280	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.243338 x 10^-1	98	103	102	86	48.76%	45.74%	201	188	RefGen V2	χ2 p-value for B73 x Mo17: '.7243338' χ2 p-value for Mo17 x B73: '.2432427' Biased in favor of strain: ''
GRMZM2G045275	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.8974 x 10^-3	173	108	198	143	61.57%	41.94%	281	341	RefGen V2	χ2 p-value for B73 x Mo17: '.0001055' χ2 p-value for Mo17 x B73: '.0028974' Biased in favor of strain: 'B73'
GRMZM2G045275	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.264 x 10^-4	164	43	117	63	79.23%	35.00%	207	180	RefGen V2	χ2 p-value for B73 x Mo17: '.0001264' χ2 p-value for Mo17 x B73: '2.01e-19' Biased in favor of strain: 'B73'
GRMZM2G045259	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.781 x 10^-4	474	175	302	331	73.04%	52.29%	649	633	RefGen V2	χ2 p-value for B73 x Mo17: '.0005781' χ2 p-value for Mo17 x B73: '1.68e-14' Biased in favor of strain: 'B73'
GRMZM2G045259	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.49 x 10^-13	372	183	329	167	67.03%	33.67%	555	496	RefGen V2	χ2 p-value for B73 x Mo17: '1.04e-15' χ2 p-value for Mo17 x B73: '3.49e-13' Biased in favor of strain: 'B73'
GRMZM2G045257	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.1036 x 10^-3	68	33	48	25	67.33%	34.25%	101	73	RefGen V2	χ2 p-value for B73 x Mo17: '.0004965' χ2 p-value for Mo17 x B73: '.0071036' Biased in favor of strain: 'B73'
GRMZM2G045257	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.329416 x 10^-1	60	12	27	37	83.33%	57.81%	72	64	RefGen V2	χ2 p-value for B73 x Mo17: '.0027001' χ2 p-value for Mo17 x B73: '.1329416' Biased in favor of strain: ''
GRMZM2G045241	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	1	1		50.00%	0	2	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G045241	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		5	1	4	2	83.33%	33.33%	6	6	RefGen V2	χ2 p-value for B73 x Mo17: '.1024704' χ2 p-value for Mo17 x B73: '.4142162' Biased in favor of strain: ''
GRMZM2G045236	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.272594 x 10^-1	7	10	10	11	41.18%	52.38%	17	21	RefGen V2	χ2 p-value for B73 x Mo17: '.4668543' χ2 p-value for Mo17 x B73: '.8272594' Biased in favor of strain: ''
GRMZM2G045236	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.767473 x 10^-1	9	7	6	28	56.25%	82.35%	16	34	RefGen V2	χ2 p-value for B73 x Mo17: '.3767473' χ2 p-value for Mo17 x B73: '.0523451' Biased in favor of strain: ''
GRMZM2G045226	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.526834 x 10^-1	8	13	20	38	38.10%	65.52%	21	58	RefGen V2	χ2 p-value for B73 x Mo17: '.005478' χ2 p-value for Mo17 x B73: '.8526834' Biased in favor of strain: ''
GRMZM2G045226	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.86403 x 10^-1	25	24	28	32	51.02%	53.33%	49	60	RefGen V2	χ2 p-value for B73 x Mo17: '.886403' χ2 p-value for Mo17 x B73: '.6055766' Biased in favor of strain: ''
GRMZM2G045215	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.0	12	12	3	18	50.00%	85.71%	24	21	RefGen V2	χ2 p-value for B73 x Mo17: '1' χ2 p-value for Mo17 x B73: '.0010631' Biased in favor of strain: ''
GRMZM2G045215	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		40	0	3	2	100.00%	40.00%	40	5	RefGen V2	χ2 p-value for B73 x Mo17: '7.74e-06' χ2 p-value for Mo17 x B73: '.2059032' Biased in favor of strain: ''
GRMZM2G045192	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.44 x 10^-24	394	47	107	26	89.34%	19.55%	441	133	RefGen V2	χ2 p-value for B73 x Mo17: '5.44e-24' χ2 p-value for Mo17 x B73: '9.64e-31' Biased in favor of strain: 'B73'
GRMZM2G045192	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.41 x 10^-10	310	119	202	92	72.26%	31.29%	429	294	RefGen V2	χ2 p-value for B73 x Mo17: '2.93e-20' χ2 p-value for Mo17 x B73: '1.41e-10' Biased in favor of strain: 'B73'
GRMZM2G045188	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	396	81	303	51	83.02%	14.41%	477	354	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G045188	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	9.31 x 10^-8	1473	566	366	479	72.24%	56.69%	2039	845	RefGen V2	χ2 p-value for B73 x Mo17: '9.31e-08' χ2 p-value for Mo17 x B73: '7.54e-10' Biased in favor of strain: 'B73'
GRMZM2G045185	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.386 x 10^-4	0	15	0	27	0.00%	100.00%	15	27	RefGen V2	χ2 p-value for B73 x Mo17: '4.32e-08' χ2 p-value for Mo17 x B73: '.0002386' Biased in favor of strain: 'Mo17'
GRMZM2G045185	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.24 x 10^-8	3	40	0	29	6.98%	100.00%	43	29	RefGen V2	χ2 p-value for B73 x Mo17: '1.68e-08' χ2 p-value for Mo17 x B73: '7.24e-08' Biased in favor of strain: 'Mo17'
GRMZM2G045178	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	9	0	14	0.00%	100.00%	9	14	RefGen V2	χ2 p-value for B73 x Mo17: '.0026998' χ2 p-value for Mo17 x B73: '.0001828' Biased in favor of strain: ''
GRMZM2G045178	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	3	0	3	0.00%	100.00%	3	3	RefGen V2	χ2 p-value for B73 x Mo17: '.0143052' χ2 p-value for Mo17 x B73: '.2206714' Biased in favor of strain: ''
GRMZM2G045155	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	0	135	28	1042	0.00%	97.38%	135	1070	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'Mo17'
GRMZM2G045155	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	1	0	20	0.00%	100.00%	1	20	RefGen V2	χ2 p-value for B73 x Mo17: '.3173105' χ2 p-value for Mo17 x B73: '7.74e-06' Biased in favor of strain: ''
GRMZM2G045135	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		3	3	1	1	50.00%	50.00%	6	2	RefGen V2	χ2 p-value for B73 x Mo17: '1' χ2 p-value for Mo17 x B73: '1' Biased in favor of strain: ''
GRMZM2G045135	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		3	1	2	0	75.00%	0.00%	4	2	RefGen V2	χ2 p-value for B73 x Mo17: '.7236798' χ2 p-value for Mo17 x B73: '.0455002' Biased in favor of strain: ''
GRMZM2G045117	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		5	0	4	0	100.00%	0.00%	5	4	RefGen V2	χ2 p-value for B73 x Mo17: '.1138475' χ2 p-value for Mo17 x B73: '.0046777' Biased in favor of strain: ''
GRMZM2G045117	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.43059 x 10^-2	18	6	28	3	75.00%	9.68%	24	31	RefGen V2	χ2 p-value for B73 x Mo17: '.0143059' χ2 p-value for Mo17 x B73: '7.12e-06' Biased in favor of strain: 'B73'
GRMZM2G045090	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.026685 x 10^-1	234	200	289	232	53.92%	44.53%	434	521	RefGen V2	χ2 p-value for B73 x Mo17: '.1026685' χ2 p-value for Mo17 x B73: '.0125173' Biased in favor of strain: ''
GRMZM2G045090	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.894393 x 10^-1	232	107	162	226	68.44%	58.25%	339	388	RefGen V2	χ2 p-value for B73 x Mo17: '.4894393' χ2 p-value for Mo17 x B73: '.0004348' Biased in favor of strain: ''
GRMZM2G045084	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.271319 x 10^-1	42	13	40	30	76.36%	42.86%	55	70	RefGen V2	χ2 p-value for B73 x Mo17: '.1271319' χ2 p-value for Mo17 x B73: '.0000238' Biased in favor of strain: ''
GRMZM2G045084	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.76992 x 10^-1	50	38	45	37	56.82%	45.12%	88	82	RefGen V2	χ2 p-value for B73 x Mo17: '.2008251' χ2 p-value for Mo17 x B73: '.376992' Biased in favor of strain: ''
GRMZM2G045082	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.8 x 10^-6	367	252	404	277	59.29%	40.68%	619	681	RefGen V2	χ2 p-value for B73 x Mo17: '3.80e-06' χ2 p-value for Mo17 x B73: '1.14e-06' Biased in favor of strain: 'B73'
GRMZM2G045082	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		3	2	6	8	60.00%	57.14%	5	14	RefGen V2	χ2 p-value for B73 x Mo17: '.7518208' χ2 p-value for Mo17 x B73: '.4496917' Biased in favor of strain: ''
GRMZM2G045070	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.06 x 10^-26	4325	3314	2607	6671	56.62%	71.90%	7639	9278	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '1.06e-26' Biased in favor of strain: 'Mo17'
GRMZM2G045070	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.577343 x 10^-1	2730	1995	1839	1771	57.78%	49.06%	4725	3610	RefGen V2	χ2 p-value for B73 x Mo17: '1.10e-26' χ2 p-value for Mo17 x B73: '.2577343' Biased in favor of strain: ''
GRMZM2G045057	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	5	2	13	0.00%	86.67%	5	15	RefGen V2	χ2 p-value for B73 x Mo17: '.0253473' χ2 p-value for Mo17 x B73: '.0045087' Biased in favor of strain: ''
GRMZM2G045057	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	0	0			0	0	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G045049	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.74 x 10^-11	560	153	346	427	78.54%	55.24%	713	773	RefGen V2	χ2 p-value for B73 x Mo17: '1.74e-11' χ2 p-value for Mo17 x B73: '1.59e-11' Biased in favor of strain: 'B73'
GRMZM2G045049	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.3137 x 10^-2	279	211	185	226	56.94%	54.99%	490	411	RefGen V2	χ2 p-value for B73 x Mo17: '.0021268' χ2 p-value for Mo17 x B73: '.043137' Biased in favor of strain: ''
GRMZM2G045005	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.841949 x 10^-1	273	155	222	200	63.79%	47.39%	428	422	RefGen V2	χ2 p-value for B73 x Mo17: '1.17e-08' χ2 p-value for Mo17 x B73: '.2841949' Biased in favor of strain: ''
GRMZM2G045005	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.484476 x 10^-1	895	428	420	593	67.65%	58.54%	1323	1013	RefGen V2	χ2 p-value for B73 x Mo17: '.4484476' χ2 p-value for Mo17 x B73: '4.08e-08' Biased in favor of strain: ''

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