| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G17460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.26845 x 10-1 | 5 | 3 | 62.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.84674 x 10-1 | 13 | 1 | 92.86% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17450 | HIPP21 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17450 | HIPP21 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '7.4391' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17450 | HIPP21 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4.60454' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G17450 | HIPP21 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.32769' Avg. embryo expression (LCM): '0' |
|||||
| AT5G17450 | HIPP21 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17450 | HIPP21 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17440 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.5 x 10-13 | 272 | 44 | 86.08% | 316 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.22132 x 10-1 | 534 | 350 | 383 | 909 | 60.41% | 70.36% | 884 | 1292 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.524163' Avg. expression score for this sample: '484.942' Avg. expression score in LCM sample: '88.1728' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.9696 x 10-2 | 272 | 139 | 88 | 277 | 66.18% | 75.89% | 411 | 365 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.524163' Avg. expression score for this sample: '155.871' Avg. expression score in LCM sample: '88.1728' Tissue used: 'full endosperm' |
|||||
| AT5G17440 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.47727 x 10-1 | 519 | 536 | 136 | 164 | 49.19% | 54.67% | 1055 | 300 | TAIR8 |
Avg. embryo expression (dissected): '508.078' Avg. embryo expression (LCM): '278.16' |
||||
| AT5G17440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.8416 x 10-2 | 172 | 57 | 75.11% | 229 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.436 x 10-3 | 212 | 64 | 76.81% | 276 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17430 | BBM | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.64061 x 10-1 | 3 | 5 | 37.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17430 | BBM | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.409859' Avg. expression score for this sample: '8.12406' Avg. expression score in LCM sample: '.837781' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17430 | BBM | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 2 | 2 | 2 | 50.00% | 50.00% | 4 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.409859' Avg. expression score for this sample: '8.46031' Avg. expression score in LCM sample: '.837781' Tissue used: 'full endosperm' |
||||
| AT5G17430 | BBM | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 14 | 17 | 3 | 4 | 45.16% | 57.14% | 31 | 7 | TAIR8 |
Avg. embryo expression (dissected): '142.455' Avg. embryo expression (LCM): '123.715' |
|||
| AT5G17430 | BBM | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17430 | BBM | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.3407 x 10-2 | 0 | 6 | 0.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17420 | IRX3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17420 | IRX3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.323077' Avg. expression score for this sample: '6.68378' Avg. expression score in LCM sample: '.440937' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17420 | IRX3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.23077 x 10-1 | 6 | 0 | 1 | 1 | 100.00% | 50.00% | 6 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.323077' Avg. expression score for this sample: '18.3739' Avg. expression score in LCM sample: '.440937' Tissue used: 'full endosperm' |
||||
| AT5G17420 | IRX3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '12.6015' Avg. embryo expression (LCM): '3.3657' |
|||||
| AT5G17420 | IRX3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17420 | IRX3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17410 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G17410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '25.7922' Avg. expression score in LCM sample: '17.6081' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '29.2388' Avg. expression score in LCM sample: '17.6081' Tissue used: 'full endosperm' |
|||||||
| AT5G17410 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '29.1239' Avg. embryo expression (LCM): '52.1307' |
||||||
| AT5G17410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G17410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G17400 | ER-ANT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.97 x 10-3 | 23 | 1 | 95.83% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17400 | ER-ANT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.23097 x 10-1 | 11 | 2 | 3 | 6 | 84.62% | 66.67% | 13 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '37.6087' Avg. expression score in LCM sample: '29.5722' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17400 | ER-ANT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.9591 x 10-1 | 13 | 6 | 7 | 4 | 68.42% | 36.36% | 19 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '37.3069' Avg. expression score in LCM sample: '29.5722' Tissue used: 'full endosperm' |
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| AT5G17400 | ER-ANT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 6 | 1 | 0 | 57.14% | 0.00% | 14 | 1 | TAIR8 |
Avg. embryo expression (dissected): '40.4419' Avg. embryo expression (LCM): '25.2679' |
|||
| AT5G17400 | ER-ANT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17400 | ER-ANT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.93727 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.20438' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.49406' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G17390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.07468' Avg. embryo expression (LCM): '1.46935' |
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| AT5G17390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G17390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G17380 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 578 | 6 | 98.97% | 584 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 50 | 19 | 22 | 32 | 72.46% | 59.26% | 69 | 54 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.265697' Avg. expression score for this sample: '199.538' Avg. expression score in LCM sample: '125.05' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.30039 x 10-1 | 235 | 52 | 183 | 304 | 81.88% | 62.42% | 287 | 487 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.265697' Avg. expression score for this sample: '398.041' Avg. expression score in LCM sample: '125.05' Tissue used: 'full endosperm' |
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| AT5G17380 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.90856 x 10-1 | 23 | 13 | 4 | 3 | 63.89% | 42.86% | 36 | 7 | TAIR8 |
Avg. embryo expression (dissected): '108.962' Avg. embryo expression (LCM): '76.5069' |
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| AT5G17380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0587 x 10-2 | 73 | 16 | 82.02% | 89 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.77474 x 10-1 | 168 | 64 | 72.41% | 232 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17370 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 3 | 66.67% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 1 | 1 | 0.00% | 50.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.79448' Avg. expression score in LCM sample: '4.233' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 4 | 0 | 4 | 42.86% | 100.00% | 7 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '10.2689' Avg. expression score in LCM sample: '4.233' Tissue used: 'full endosperm' |
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| AT5G17370 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 2 | 1 | 0 | 50.00% | 0.00% | 4 | 1 | TAIR8 |
Avg. embryo expression (dissected): '4.854' Avg. embryo expression (LCM): '2.71265' |
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| AT5G17370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 3 | 66.67% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17360 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.334 x 10-3 | 94 | 11 | 89.52% | 105 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.71684 x 10-1 | 11 | 14 | 5 | 12 | 44.00% | 70.59% | 25 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034108' Avg. expression score for this sample: '11.0813' Avg. expression score in LCM sample: '1.14644' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.675 x 10-3 | 70 | 9 | 24 | 74 | 88.61% | 75.51% | 79 | 98 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034108' Avg. expression score for this sample: '29.0608' Avg. expression score in LCM sample: '1.14644' Tissue used: 'full endosperm' |
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| AT5G17360 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 6 | 1 | 0 | 45.45% | 0.00% | 11 | 1 | TAIR8 |
Avg. embryo expression (dissected): '4.45609' Avg. embryo expression (LCM): '3.91828' |
||||
| AT5G17360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.69442 x 10-1 | 7 | 4 | 63.64% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.60931 x 10-1 | 85 | 34 | 71.43% | 119 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.29081 x 10-1 | 14 | 1 | 93.33% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.25023 x 10-1 | 35 | 11 | 11 | 18 | 76.09% | 62.07% | 46 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.056398' Avg. expression score for this sample: '31.4758' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.8864 x 10-2 | 84 | 7 | 31 | 44 | 92.31% | 58.67% | 91 | 75 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.056398' Avg. expression score for this sample: '43.7464' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G17350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 9 | 7 | 2 | 1 | 56.25% | 33.33% | 16 | 3 | TAIR8 |
Avg. embryo expression (dissected): '11.941' Avg. embryo expression (LCM): '3.0015' |
||||
| AT5G17350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.5362 x 10-2 | 6 | 7 | 46.15% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.013 x 10-3 | 19 | 0 | 100.00% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17340 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G17340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.280945' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G17340 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.450811' Avg. embryo expression (LCM): '1.94658' |
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| AT5G17340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G17340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G17330 | GAD | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.68818 x 10-1 | 93 | 29 | 76.23% | 122 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17330 | GAD | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.99792 x 10-1 | 5 | 6 | 3 | 4 | 45.45% | 57.14% | 11 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.240186' Avg. expression score for this sample: '15.4408' Avg. expression score in LCM sample: '11.0234' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17330 | GAD | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.1592 x 10-2 | 17 | 10 | 2 | 36 | 62.96% | 94.74% | 27 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.240186' Avg. expression score for this sample: '33.1867' Avg. expression score in LCM sample: '11.0234' Tissue used: 'full endosperm' |
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| AT5G17330 | GAD | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '1.34377' |
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| AT5G17330 | GAD | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 17 | 5 | 77.27% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17330 | GAD | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.46226 x 10-1 | 65 | 13 | 83.33% | 78 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17320 | HDG9 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.88019 x 10-1 | 59 | 4 | 93.65% | 63 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT5G17320 | HDG9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 7.3 x 10-16 | 40 | 1 | 4 | 141 | 97.56% | 97.24% | 41 | 145 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.1e-20' Avg. expression score for this sample: '120.083' Avg. expression score in LCM sample: '202.64' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17320 | HDG9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 1.8 x 10-5 | 5 | 1 | 3 | 67 | 83.33% | 95.71% | 6 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.1e-20' Avg. expression score for this sample: '30.0259' Avg. expression score in LCM sample: '202.64' Tissue used: 'full endosperm' |
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| AT5G17320 | HDG9 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.31222 x 10-1 | 2 | 1 | 0 | 6 | 66.67% | 100.00% | 3 | 6 | TAIR8 |
Avg. embryo expression (dissected): '12.7771' Avg. embryo expression (LCM): '.590253' |
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| AT5G17320 | HDG9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT5G17320 | HDG9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 409 | 15 | 96.46% | 424 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT5G17310 | UGP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17310 | UGP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '17.9379' Avg. expression score in LCM sample: '18.6076' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17310 | UGP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '28.6044' Avg. expression score in LCM sample: '18.6076' Tissue used: 'full endosperm' |
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| AT5G17310 | UGP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '32.2616' Avg. embryo expression (LCM): '19.2397' |
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| AT5G17310 | UGP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17310 | UGP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G17300 | RVE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.1699 x 10-2 | 16 | 12 | 57.14% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17300 | RVE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 7 | 2 | 3 | 6 | 77.78% | 66.67% | 9 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.24701' Avg. expression score for this sample: '49.0492' Avg. expression score in LCM sample: '6.40829' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G17300 | RVE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.48718 x 10-1 | 25 | 3 | 7 | 11 | 89.29% | 61.11% | 28 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.24701' Avg. expression score for this sample: '65.3936' Avg. expression score in LCM sample: '6.40829' Tissue used: 'full endosperm' |
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| AT5G17300 | RVE1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 5 | 3 | 1 | 50.00% | 25.00% | 10 | 4 | TAIR8 |
Avg. embryo expression (dissected): '37.4405' Avg. embryo expression (LCM): '11.6418' |
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| AT5G17300 | RVE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17300 | RVE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.21817 x 10-1 | 42 | 19 | 68.85% | 61 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17290 | APG5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.83771 x 10-1 | 30 | 13 | 69.77% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G17290 | APG5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.8084 x 10-1 | 10 | 2 | 4 | 10 | 83.33% | 71.43% | 12 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.161112' Avg. expression score for this sample: '64.1317' Avg. expression score in LCM sample: '30.5276' Tissue used: 'pure endosperm, no chalazal' |