| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G19510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.63398 x 10-1 | 190 | 80 | 151 | 260 | 70.37% | 63.26% | 270 | 411 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.670061' Avg. expression score for this sample: '3317.04' Avg. expression score in LCM sample: '1551.12' Tissue used: 'full endosperm' |
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| AT5G19510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.43036 x 10-1 | 83 | 74 | 30 | 16 | 52.87% | 34.78% | 157 | 46 | TAIR8 |
Avg. embryo expression (dissected): '6587.82' Avg. embryo expression (LCM): '6160.91' |
||||
| AT5G19510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 39 | 21 | 65.00% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.08098 x 10-1 | 255 | 122 | 67.64% | 377 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-15 | 507 | 95 | 84.22% | 602 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 48 | 19 | 20 | 30 | 71.64% | 60.00% | 67 | 50 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '116.799' Avg. expression score in LCM sample: '57.4395' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 267 | 108 | 221 | 389 | 71.20% | 63.77% | 375 | 610 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '266.398' Avg. expression score in LCM sample: '57.4395' Tissue used: 'full endosperm' |
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| AT5G19500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.20936 x 10-1 | 86 | 65 | 25 | 22 | 56.95% | 46.81% | 151 | 47 | TAIR8 |
Avg. embryo expression (dissected): '273.597' Avg. embryo expression (LCM): '284.766' |
||||
| AT5G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.32995 x 10-1 | 50 | 32 | 60.98% | 82 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.3502 x 10-1 | 359 | 167 | 68.25% | 526 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.980144' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G19490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 3 | 100.00% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.85864' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT5G19490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 3 | 0 | 1 | 0.00% | 100.00% | 3 | 1 | TAIR8 |
Avg. embryo expression (dissected): '4.25517' Avg. embryo expression (LCM): '15.9117' |
||||
| AT5G19490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19485 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.44263 x 10-1 | 5 | 5 | 50.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19485 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 2 | 1 | 2 | 33.33% | 66.67% | 3 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '12.9703' Avg. expression score in LCM sample: '8.92163' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19485 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 1 | 2 | 4 | 83.33% | 66.67% | 6 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '23.6631' Avg. expression score in LCM sample: '8.92163' Tissue used: 'full endosperm' |
|||||
| AT5G19485 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 0 | 0 | 66.67% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '18.9003' Avg. embryo expression (LCM): '36.759' |
|||||
| AT5G19485 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G19485 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.47016 x 10-1 | 13 | 9 | 59.09% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.85 x 10-4 | 115 | 17 | 87.12% | 132 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.42341 x 10-1 | 123 | 67 | 78 | 160 | 64.74% | 67.23% | 190 | 238 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005736' Avg. expression score for this sample: '339.599' Avg. expression score in LCM sample: '46.9157' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.5 x 10-5 | 207 | 68 | 54 | 215 | 75.27% | 79.93% | 275 | 269 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005736' Avg. expression score for this sample: '446.057' Avg. expression score in LCM sample: '46.9157' Tissue used: 'full endosperm' |
|||||
| AT5G19480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.03554 x 10-1 | 43 | 64 | 14 | 8 | 40.19% | 36.36% | 107 | 22 | TAIR8 |
Avg. embryo expression (dissected): '241.075' Avg. embryo expression (LCM): '167.444' |
||||
| AT5G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.30933 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.8357 x 10-1 | 55 | 18 | 75.34% | 73 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19473 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19473 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.916524' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19473 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G19473 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G19473 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G19473 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G19470 | NUDT24 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19470 | NUDT24 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.203181' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19470 | NUDT24 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.573465' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G19470 | NUDT24 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.460097' Avg. embryo expression (LCM): '0' |
||||
| AT5G19470 | NUDT24 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19470 | NUDT24 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19460 | NUDT20 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.52217 x 10-1 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G19460 | NUDT20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 1 | 1 | 5 | 66.67% | 83.33% | 3 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '15.1892' Avg. expression score in LCM sample: '3.63039' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19460 | NUDT20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 5 | 1 | 5 | 54.55% | 83.33% | 11 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '15.8844' Avg. expression score in LCM sample: '3.63039' Tissue used: 'full endosperm' |
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| AT5G19460 | NUDT20 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 9 | 2 | 7 | 18.18% | 77.78% | 11 | 9 | TAIR8 |
Avg. embryo expression (dissected): '32.7997' Avg. embryo expression (LCM): '37.2613' |
|||
| AT5G19460 | NUDT20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G19460 | NUDT20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 10 | 4 | 71.43% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G19450 | CDPK19 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 981 | 94 | 91.26% | 1075 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G19450 | CDPK19 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.73836 x 10-1 | 424 | 216 | 186 | 445 | 66.25% | 70.52% | 640 | 631 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.9e-08' Avg. expression score for this sample: '872.113' Avg. expression score in LCM sample: '271.103' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19450 | CDPK19 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.4 x 10-11 | 765 | 285 | 191 | 748 | 72.86% | 79.66% | 1050 | 939 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.9e-08' Avg. expression score for this sample: '1458.03' Avg. expression score in LCM sample: '271.103' Tissue used: 'full endosperm' |
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| AT5G19450 | CDPK19 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.25921 x 10-1 | 282 | 298 | 89 | 138 | 48.62% | 60.79% | 580 | 227 | TAIR8 |
Avg. embryo expression (dissected): '862.922' Avg. embryo expression (LCM): '504.855' |
|||
| AT5G19450 | CDPK19 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.89173 x 10-1 | 137 | 39 | 77.84% | 176 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G19450 | CDPK19 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 556 | 34 | 94.24% | 590 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-6 | 266 | 27 | 90.78% | 293 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 2 | 1 | 3 | 50.00% | 75.00% | 4 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.225232' Avg. expression score for this sample: '157.567' Avg. expression score in LCM sample: '59.1591' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.57453 x 10-1 | 56 | 13 | 27 | 55 | 81.16% | 67.07% | 69 | 82 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.225232' Avg. expression score for this sample: '171.246' Avg. expression score in LCM sample: '59.1591' Tissue used: 'full endosperm' |
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| AT5G19440 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.95098 x 10-1 | 6 | 4 | 1 | 2 | 60.00% | 66.67% | 10 | 3 | TAIR8 |
Avg. embryo expression (dissected): '266.7' Avg. embryo expression (LCM): '230.952' |
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| AT5G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.65993 x 10-1 | 16 | 2 | 88.89% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.85457 x 10-1 | 91 | 27 | 77.12% | 118 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19430 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0005 | 131 | 27 | 82.91% | 158 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.97719 x 10-1 | 90 | 48 | 26 | 82 | 65.22% | 75.93% | 138 | 108 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.497601' Avg. expression score for this sample: '343.021' Avg. expression score in LCM sample: '114.835' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.49322 x 10-1 | 76 | 44 | 37 | 94 | 63.33% | 71.76% | 120 | 131 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.497601' Avg. expression score for this sample: '226.197' Avg. expression score in LCM sample: '114.835' Tissue used: 'full endosperm' |
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| AT5G19430 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.36586 x 10-1 | 49 | 77 | 20 | 29 | 38.89% | 59.18% | 126 | 49 | TAIR8 |
Avg. embryo expression (dissected): '354.875' Avg. embryo expression (LCM): '149.347' |
||||
| AT5G19430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.01939 x 10-1 | 25 | 9 | 73.53% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-13 | 160 | 9 | 94.67% | 169 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19420 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.6921 x 10-2 | 41 | 3 | 93.18% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.10777 x 10-1 | 6 | 1 | 0 | 4 | 85.71% | 100.00% | 7 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.256526' Avg. expression score for this sample: '25.7348' Avg. expression score in LCM sample: '19.5188' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.40952 x 10-1 | 10 | 3 | 12 | 33 | 76.92% | 73.33% | 13 | 45 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.256526' Avg. expression score for this sample: '45.9856' Avg. expression score in LCM sample: '19.5188' Tissue used: 'full endosperm' |
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| AT5G19420 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 2 | 1 | 0.00% | 33.33% | 1 | 3 | TAIR8 |
Avg. embryo expression (dissected): '34.6459' Avg. embryo expression (LCM): '31.4592' |
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| AT5G19420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.30961 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.74046 x 10-1 | 16 | 1 | 94.12% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19410 | ABCG23 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.36364 x 10-1 | 26 | 1 | 96.30% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G19410 | ABCG23 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.30769 x 10-1 | 6 | 0 | 0 | 1 | 100.00% | 100.00% | 6 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.0e-20' Avg. expression score for this sample: '3.43378' Avg. expression score in LCM sample: '3.13066' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19410 | ABCG23 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.3 x 10-19 | 103 | 0 | 0 | 61 | 100.00% | 100.00% | 103 | 61 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.0e-20' Avg. expression score for this sample: '67.7486' Avg. expression score in LCM sample: '3.13066' Tissue used: 'full endosperm' |
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| AT5G19410 | ABCG23 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 2 | 0 | 0 | 50.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.25629' Avg. embryo expression (LCM): '0' |
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| AT5G19410 | ABCG23 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19410 | ABCG23 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.7 x 10-7 | 3 | 4 | 42.86% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G19400 | SMG7 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6734 x 10-2 | 308 | 51 | 85.79% | 359 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G19400 | SMG7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.66897 x 10-1 | 33 | 14 | 14 | 18 | 70.21% | 56.25% | 47 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000505' Avg. expression score for this sample: '293.752' Avg. expression score in LCM sample: '148.816' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19400 | SMG7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.8 x 10-5 | 112 | 20 | 23 | 101 | 84.85% | 81.45% | 132 | 124 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000505' Avg. expression score for this sample: '388.607' Avg. expression score in LCM sample: '148.816' Tissue used: 'full endosperm' |
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| AT5G19400 | SMG7 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.6382 x 10-1 | 28 | 21 | 4 | 7 | 57.14% | 63.64% | 49 | 11 | TAIR8 |
Avg. embryo expression (dissected): '275.427' Avg. embryo expression (LCM): '198.451' |
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| AT5G19400 | SMG7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.9465 x 10-2 | 32 | 3 | 91.43% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G19400 | SMG7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.2149 x 10-2 | 215 | 89 | 70.72% | 304 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G19390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.7 x 10-9 | 61 | 1 | 98.39% | 62 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.09001 x 10-1 | 56 | 20 | 22 | 44 | 73.68% | 66.67% | 76 | 66 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.92946' Avg. expression score for this sample: '100.639' Avg. expression score in LCM sample: '65.5968' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.93092 x 10-1 | 39 | 29 | 26 | 50 | 57.35% | 65.79% | 68 | 76 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.92946' Avg. expression score for this sample: '160.195' Avg. expression score in LCM sample: '65.5968' Tissue used: 'full endosperm' |
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| AT5G19390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.81505 x 10-1 | 38 | 45 | 10 | 11 | 45.78% | 52.38% | 83 | 21 | TAIR8 |
Avg. embryo expression (dissected): '155.657' Avg. embryo expression (LCM): '97.7936' |
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| AT5G19390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 11 | 5 | 68.75% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.74 x 10-4 | 57 | 8 | 87.69% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19380 | CLT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19380 | CLT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '26.2533' Avg. expression score in LCM sample: '10.5384' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19380 | CLT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '26.6864' Avg. expression score in LCM sample: '10.5384' Tissue used: 'full endosperm' |
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| AT5G19380 | CLT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '54.099' Avg. embryo expression (LCM): '34.5361' |
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| AT5G19380 | CLT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19380 | CLT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19370 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.43 x 10-4 | 28 | 2 | 93.33% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.27398 x 10-1 | 16 | 12 | 8 | 12 | 57.14% | 60.00% | 28 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.332552' Avg. expression score for this sample: '113.045' Avg. expression score in LCM sample: '34.8635' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G19370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.08985 x 10-1 | 17 | 16 | 8 | 21 | 51.52% | 72.41% | 33 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.332552' Avg. expression score for this sample: '160.916' Avg. expression score in LCM sample: '34.8635' Tissue used: 'full endosperm' |
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| AT5G19370 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.55155 x 10-1 | 22 | 25 | 6 | 6 | 46.81% | 50.00% | 47 | 12 | TAIR8 |
Avg. embryo expression (dissected): '300.833' Avg. embryo expression (LCM): '218.858' |
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| AT5G19370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.80341 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G19370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.92938 x 10-1 | 14 | 4 | 77.78% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |