Displaying data sets 27001 - 27100 of 169464 in total
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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G20280 SPS1F endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 MEG 1.41712 x 10-1 59 19 8 24 75.64% 75.00% 78 32 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.5e-12'
Avg. expression score for this sample: '255.021'
Avg. expression score in LCM sample: '229.39'
Tissue used: 'pure endosperm, no chalazal'
AT5G20280 SPS1F endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 MEG 4.1 x 10-13 126 15 27 205 89.36% 88.36% 141 232 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.5e-12'
Avg. expression score for this sample: '554.407'
Avg. expression score in LCM sample: '229.39'
Tissue used: 'full endosperm'
AT5G20280 SPS1F embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.2349 x 10-1 13 5 4 10 72.22% 71.43% 18 14 TAIR8 Avg. embryo expression (dissected): '63.8205'
Avg. embryo expression (LCM): '42.7368'
AT5G20280 SPS1F endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 6.9395 x 10-2 45 2 95.74% 47 TAIR8 Mutant effect: 'MEG not affected by met1, dme or fie'
AT5G20280 SPS1F endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.2796 x 10-2 422 100 80.84% 522 TAIR8 Mutant effect: 'MEG not affected by met1, dme or fie'
AT5G20280 SPS1F endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 8.1 x 10-8 544 27 95.27% 571 TAIR8 Mutant effect: 'MEG not affected by met1, dme or fie'
AT5G20270 HHP1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.4 0 1 2 0 0.00% 0.00% 1 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.677617'
Avg. expression score for this sample: '37.8851'
Avg. expression score in LCM sample: '9.50955'
Tissue used: 'pure endosperm, no chalazal'
AT5G20270 HHP1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 9.0226 x 10-2 4 0 0 7 100.00% 100.00% 4 7 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.677617'
Avg. expression score for this sample: '46.1785'
Avg. expression score in LCM sample: '9.50955'
Tissue used: 'full endosperm'
AT5G20270 HHP1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 5 1 3 0 83.33% 0.00% 6 3 TAIR8 Avg. embryo expression (dissected): '228.639'
Avg. embryo expression (LCM): '103.897'
AT5G20270 HHP1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20270 HHP1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20270 HHP1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 6.04348 x 10-1 10 1 90.91% 11 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20260 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 2 0 0 0 100.00% 2 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.04926'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20260 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 2 0 0 0 100.00% 2 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '3.01154'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20260 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '1.15781'
Avg. embryo expression (LCM): '0'
AT5G20260 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20260 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20260 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.45098 x 10-1 8 6 57.14% 14 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20250 DIN10 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.823 x 10-3 23 0 0 5 100.00% 100.00% 23 5 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.8e-14'
Avg. expression score for this sample: '626.361'
Avg. expression score in LCM sample: '43.2707'
Tissue used: 'pure endosperm, no chalazal'
AT5G20250 DIN10 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.3 x 10-11 32 0 2 81 100.00% 97.59% 32 83 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.8e-14'
Avg. expression score for this sample: '1909.63'
Avg. expression score in LCM sample: '43.2707'
Tissue used: 'full endosperm'
AT5G20250 DIN10 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.08392 x 10-1 1 5 0 1 16.67% 100.00% 6 1 TAIR8 Avg. embryo expression (dissected): '275.011'
Avg. embryo expression (LCM): '25.3934'
AT5G20250 DIN10 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 22 0 100.00% 22 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20250 DIN10 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.27793 x 10-1 51 3 94.44% 54 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20250 DIN10 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.14137 x 10-1 87 5 94.57% 92 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20240 PI endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.53435 x 10-1 2 4 3 0 33.33% 0.00% 6 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.424183'
Avg. expression score for this sample: '18.4972'
Avg. expression score in LCM sample: '14.8449'
Tissue used: 'pure endosperm, no chalazal'
AT5G20240 PI endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 12 1 6 1 92.31% 14.29% 13 7 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.424183'
Avg. expression score for this sample: '9.01247'
Avg. expression score in LCM sample: '14.8449'
Tissue used: 'full endosperm'
AT5G20240 PI embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0 0 0.00% 1 0 TAIR8 Avg. embryo expression (dissected): '3.34954'
Avg. embryo expression (LCM): '4.609'
AT5G20240 PI endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20240 PI endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.88172 x 10-1 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20240 PI endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.26427 x 10-1 5 2 71.43% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20230 BCB endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 0 0 0 1 100.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.019062'
Avg. expression score for this sample: '10.0225'
Avg. expression score in LCM sample: '3.16005'
Tissue used: 'pure endosperm, no chalazal'
AT5G20230 BCB endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.8404 x 10-2 1 0 0 16 100.00% 100.00% 1 16 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.019062'
Avg. expression score for this sample: '28.5555'
Avg. expression score in LCM sample: '3.16005'
Tissue used: 'full endosperm'
AT5G20230 BCB embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '1.42482'
Avg. embryo expression (LCM): '0'
AT5G20230 BCB endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20230 BCB endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 13 0 100.00% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20230 BCB endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 6.3626 x 10-2 10 3 76.92% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20225 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '12.4559'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20225 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '17.6975'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20225 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '41.661'
Avg. embryo expression (LCM): '7.56026'
AT5G20225 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20225 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20225 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20220 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '17.3216'
Avg. expression score in LCM sample: '4.82092'
Tissue used: 'pure endosperm, no chalazal'
AT5G20220 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '60.1125'
Avg. expression score in LCM sample: '4.82092'
Tissue used: 'full endosperm'
AT5G20220 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '30.021'
Avg. embryo expression (LCM): '20.5835'
AT5G20220 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20220 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20220 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20200 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.3981 x 10-2 25 47 14 46 34.72% 76.67% 72 60 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '69.2165'
Avg. expression score in LCM sample: '60.1733'
Tissue used: 'pure endosperm, no chalazal'
AT5G20200 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.5056 x 10-2 50 10 26 72 83.33% 73.47% 60 98 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '89.3768'
Avg. expression score in LCM sample: '60.1733'
Tissue used: 'full endosperm'
AT5G20200 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 5.37916 x 10-1 43 47 13 28 47.78% 68.29% 90 41 TAIR8 Avg. embryo expression (dissected): '132.704'
Avg. embryo expression (LCM): '109.272'
AT5G20200 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.6064 x 10-2 22 3 88.00% 25 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20200 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.964 x 10-3 125 30 80.65% 155 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20200 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.72749 x 10-1 121 45 72.89% 166 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20190 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.25597 x 10-1 686 323 348 770 67.99% 68.87% 1009 1118 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '4.2e-38'
Avg. expression score for this sample: '638.792'
Avg. expression score in LCM sample: '201.788'
Tissue used: 'pure endosperm, no chalazal'
AT5G20190 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.0 1672 273 504 1721 85.96% 77.35% 1945 2225 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '4.2e-38'
Avg. expression score for this sample: '903.707'
Avg. expression score in LCM sample: '201.788'
Tissue used: 'full endosperm'
AT5G20190 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.39803 x 10-1 687 634 168 185 52.01% 52.41% 1321 353 TAIR8 Avg. embryo expression (dissected): '793.749'
Avg. embryo expression (LCM): '514.927'
AT5G20190 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 8.685 x 10-3 389 84 82.24% 473 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20190 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 2088 134 93.97% 2222 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20190 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 8187 179 97.86% 8366 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20181 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20181 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20181 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0 0 0.00% 1 0 TAIR8 Avg. embryo expression (dissected): '2.62734'
Avg. embryo expression (LCM): '0'
AT5G20181 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20181 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20181 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20180 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '86.0401'
Avg. expression score in LCM sample: '32.5118'
Tissue used: 'pure endosperm, no chalazal'
AT5G20180 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '131.333'
Avg. expression score in LCM sample: '32.5118'
Tissue used: 'full endosperm'
AT5G20180 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '159.386'
Avg. embryo expression (LCM): '293.632'
AT5G20180 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20180 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20180 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20170 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.343 x 10-3 82 13 8 27 86.32% 77.14% 95 35 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.002447'
Avg. expression score for this sample: '167.265'
Avg. expression score in LCM sample: '36.4655'
Tissue used: 'pure endosperm, no chalazal'
AT5G20170 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.3579 36 7 20 38 83.72% 65.52% 43 58 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.002447'
Avg. expression score for this sample: '87.3807'
Avg. expression score in LCM sample: '36.4655'
Tissue used: 'full endosperm'
AT5G20170 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.72804 x 10-1 68 57 6 9 54.40% 60.00% 125 15 TAIR8 Avg. embryo expression (dissected): '229.215'
Avg. embryo expression (LCM): '147.4'
AT5G20170 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.72637 x 10-1 5 3 62.50% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20170 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.1603 x 10-1 74 26 74.00% 100 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20170 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.00377 x 10-1 72 27 72.73% 99 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20165 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.79918 x 10-1 132 59 70 136 69.11% 66.02% 191 206 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.012697'
Avg. expression score for this sample: '287.493'
Avg. expression score in LCM sample: '159.443'
Tissue used: 'pure endosperm, no chalazal'
AT5G20165 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.916 x 10-3 226 87 96 296 72.20% 75.51% 313 392 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.012697'
Avg. expression score for this sample: '460.619'
Avg. expression score in LCM sample: '159.443'
Tissue used: 'full endosperm'
AT5G20165 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.28752 x 10-1 102 89 12 11 53.40% 47.83% 191 23 TAIR8 Avg. embryo expression (dissected): '207.542'
Avg. embryo expression (LCM): '284.854'
AT5G20165 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.59119 x 10-1 78 21 78.79% 99 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20165 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.599 x 10-3 110 20 84.62% 130 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20165 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.6 x 10-10 152 12 92.68% 164 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20160 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '28.3336'
Avg. expression score in LCM sample: '18.9897'
Tissue used: 'pure endosperm, no chalazal'
AT5G20160 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 0 0 1 0 0.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '47.4726'
Avg. expression score in LCM sample: '18.9897'
Tissue used: 'full endosperm'
AT5G20160 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '61.9003'
Avg. embryo expression (LCM): '233.652'
AT5G20160 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20160 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 4 0.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20160 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.42857 x 10-1 6 0 100.00% 6 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20150 SPX1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 0 0 0 1 100.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.582043'
Avg. expression score for this sample: '9.06498'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20150 SPX1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.76471 x 10-1 1 0 1 7 100.00% 87.50% 1 8 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.582043'
Avg. expression score for this sample: '27.309'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20150 SPX1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '10.9773'
Avg. embryo expression (LCM): '9.28079'
AT5G20150 SPX1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20150 SPX1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 38 7 84.44% 45 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20150 SPX1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 6.45398 x 10-1 20 6 76.92% 26 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20140 HBP5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.84541 x 10-1 8 1 1 4 88.89% 80.00% 9 5 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.548985'
Avg. expression score for this sample: '123.152'
Avg. expression score in LCM sample: '60.7465'
Tissue used: 'pure endosperm, no chalazal'
AT5G20140 HBP5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 10 11 3 21 47.62% 87.50% 21 24 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.548985'
Avg. expression score for this sample: '161.61'
Avg. expression score in LCM sample: '60.7465'
Tissue used: 'full endosperm'
AT5G20140 HBP5 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 7 10 5 7 41.18% 58.33% 17 12 TAIR8 Avg. embryo expression (dissected): '212.729'
Avg. embryo expression (LCM): '189.069'
AT5G20140 HBP5 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 6.14752 x 10-1 3 2 60.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'