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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G20447 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '5.92494'
Avg. embryo expression (LCM): '12.8097'
AT5G20447 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20447 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20447 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20440 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.398161'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20440 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20440 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G20440 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20440 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20440 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20430 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.702507'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20430 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.991388'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20430 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.795402'
Avg. embryo expression (LCM): '0'
AT5G20430 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20430 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20430 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.54545 x 10-1 9 12 42.86% 21 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20420 CHR42 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.83814 x 10-1 28 9 7 12 75.68% 63.16% 37 19 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.446727'
Avg. expression score for this sample: '44.9551'
Avg. expression score in LCM sample: '8.15734'
Tissue used: 'pure endosperm, no chalazal'
AT5G20420 CHR42 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.56356 x 10-1 161 66 66 130 70.93% 66.33% 227 196 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.446727'
Avg. expression score for this sample: '178.579'
Avg. expression score in LCM sample: '8.15734'
Tissue used: 'full endosperm'
AT5G20420 CHR42 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.15163 x 10-1 35 63 19 31 35.71% 62.00% 98 50 TAIR8 Avg. embryo expression (dissected): '163.78'
Avg. embryo expression (LCM): '31.5597'
AT5G20420 CHR42 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 9.995 x 10-3 7 11 38.89% 18 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20420 CHR42 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.0947 x 10-1 6 4 60.00% 10 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20420 CHR42 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 22 10 68.75% 32 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20410 MGD2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '54.1939'
Avg. expression score in LCM sample: '49.2086'
Tissue used: 'pure endosperm, no chalazal'
AT5G20410 MGD2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '61.0731'
Avg. expression score in LCM sample: '49.2086'
Tissue used: 'full endosperm'
AT5G20410 MGD2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '20.5506'
Avg. embryo expression (LCM): '11.2148'
AT5G20410 MGD2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20410 MGD2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20410 MGD2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20400 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1.25006'
Avg. expression score in LCM sample: '1.19053'
Tissue used: 'pure endosperm, no chalazal'
AT5G20400 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '3.35112'
Avg. expression score in LCM sample: '1.19053'
Tissue used: 'full endosperm'
AT5G20400 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '1.20655'
Avg. embryo expression (LCM): '0'
AT5G20400 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20400 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20400 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20390 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 0 0 0 2 100.00% 0 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '6.36559'
Avg. expression score in LCM sample: '5.79098'
Tissue used: 'pure endosperm, no chalazal'
AT5G20390 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.659025'
Avg. expression score in LCM sample: '5.79098'
Tissue used: 'full endosperm'
AT5G20390 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '2.09003'
Avg. embryo expression (LCM): '0'
AT5G20390 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20390 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20390 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20380 PHT4;5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.51691 x 10-1 54 11 19 19 83.08% 50.00% 65 38 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.025084'
Avg. expression score for this sample: '17.8384'
Avg. expression score in LCM sample: '11.288'
Tissue used: 'pure endosperm, no chalazal'
AT5G20380 PHT4;5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.2523 x 10-2 67 16 10 42 80.72% 80.77% 83 52 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.025084'
Avg. expression score for this sample: '20.4237'
Avg. expression score in LCM sample: '11.288'
Tissue used: 'full endosperm'
AT5G20380 PHT4;5 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.8099 x 10-2 38 10 8 7 79.17% 46.67% 48 15 TAIR8 Avg. embryo expression (dissected): '21.0757'
Avg. embryo expression (LCM): '13.7642'
AT5G20380 PHT4;5 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.13322 x 10-1 13 6 68.42% 19 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20380 PHT4;5 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.56708 x 10-1 22 8 73.33% 30 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20380 PHT4;5 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.05599 x 10-1 25 11 69.44% 36 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20370 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 1 0 1 0 100.00% 0.00% 1 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.592075'
Avg. expression score for this sample: '.98087'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20370 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 2 1 2 0 66.67% 0.00% 3 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.592075'
Avg. expression score for this sample: '2.00753'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20370 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0 0 0.00% 1 0 TAIR8 Avg. embryo expression (dissected): '.550893'
Avg. embryo expression (LCM): '0'
AT5G20370 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20370 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20370 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 6 5 54.55% 11 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20360 Phox3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 5.22533 x 10-1 176 131 100 250 57.33% 71.43% 307 350 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1.6e-07'
Avg. expression score for this sample: '266.795'
Avg. expression score in LCM sample: '79.9126'
Tissue used: 'pure endosperm, no chalazal'
AT5G20360 Phox3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.4 x 10-10 752 242 318 958 75.65% 75.08% 994 1276 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1.6e-07'
Avg. expression score for this sample: '573.728'
Avg. expression score in LCM sample: '79.9126'
Tissue used: 'full endosperm'
AT5G20360 Phox3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.81507 x 10-1 118 143 34 65 45.21% 65.66% 261 99 TAIR8 Avg. embryo expression (dissected): '284.874'
Avg. embryo expression (LCM): '213.106'
AT5G20360 Phox3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.75766 x 10-1 105 32 76.64% 137 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20360 Phox3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.46 x 10-4 1571 454 77.58% 2025 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20360 Phox3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 9.7 x 10-18 1211 224 84.39% 1435 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20350 TIP1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.68326 x 10-1 36 8 11 25 81.82% 69.44% 44 36 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.127299'
Avg. expression score for this sample: '114.777'
Avg. expression score in LCM sample: '74.7977'
Tissue used: 'pure endosperm, no chalazal'
AT5G20350 TIP1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.55041 x 10-1 24 5 13 26 82.76% 66.67% 29 39 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.127299'
Avg. expression score for this sample: '82.9551'
Avg. expression score in LCM sample: '74.7977'
Tissue used: 'full endosperm'
AT5G20350 TIP1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 21 23 6 7 47.73% 53.85% 44 13 TAIR8 Avg. embryo expression (dissected): '109.408'
Avg. embryo expression (LCM): '66.7614'
AT5G20350 TIP1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.26463 x 10-1 8 5 61.54% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20350 TIP1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 46 16 74.19% 62 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20350 TIP1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.7264 x 10-2 76 10 88.37% 86 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20340 BG5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20340 BG5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20340 BG5 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G20340 BG5 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20340 BG5 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20340 BG5 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20330 BETAG4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20330 BETAG4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.233305'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20330 BETAG4 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G20330 BETAG4 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20330 BETAG4 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20330 BETAG4 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20320 DCL4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.473 x 10-3 78 50 64 46 60.94% 41.82% 128 110 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.086854'
Avg. expression score for this sample: '62.0977'
Avg. expression score in LCM sample: '31.042'
Tissue used: 'pure endosperm, no chalazal'
AT5G20320 DCL4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.73842 x 10-1 94 25 55 88 78.99% 61.54% 119 143 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.086854'
Avg. expression score for this sample: '83.0917'
Avg. expression score in LCM sample: '31.042'
Tissue used: 'full endosperm'
AT5G20320 DCL4 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.1059 x 10-2 61 19 27 18 76.25% 40.00% 80 45 TAIR8 Avg. embryo expression (dissected): '53.4825'
Avg. embryo expression (LCM): '27.4154'
AT5G20320 DCL4 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.1012 x 10-2 24 6 80.00% 30 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20320 DCL4 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.34742 x 10-1 57 28 67.06% 85 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20320 DCL4 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 8.8 x 10-7 146 34 81.11% 180 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20310 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.586735'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20310 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.262684'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20310 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.438221'
Avg. embryo expression (LCM): '0'
AT5G20310 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20310 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20310 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20300 Toc90 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 28 27 20 70 50.91% 77.78% 55 90 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.058357'
Avg. expression score for this sample: '472.928'
Avg. expression score in LCM sample: '206.609'
Tissue used: 'pure endosperm, no chalazal'
AT5G20300 Toc90 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.2177 x 10-2 117 60 71 236 66.10% 76.87% 177 307 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.058357'
Avg. expression score for this sample: '455.224'
Avg. expression score in LCM sample: '206.609'
Tissue used: 'full endosperm'
AT5G20300 Toc90 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.57217 x 10-1 20 36 10 11 35.71% 52.38% 56 21 TAIR8 Avg. embryo expression (dissected): '446.951'
Avg. embryo expression (LCM): '247.153'
AT5G20300 Toc90 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.25461 x 10-1 23 6 79.31% 29 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20300 Toc90 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.4171 x 10-2 113 25 81.88% 138 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20300 Toc90 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0283 103 24 81.10% 127 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20290 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.38353 x 10-1 740 265 214 258 73.63% 54.66% 1005 472 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.076762'
Avg. expression score for this sample: '3201.69'
Avg. expression score in LCM sample: '1391.79'
Tissue used: 'pure endosperm, no chalazal'
AT5G20290 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.607 x 10-3 434 194 357 434 69.11% 54.87% 628 791 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.076762'
Avg. expression score for this sample: '2115.35'
Avg. expression score in LCM sample: '1391.79'
Tissue used: 'full endosperm'
AT5G20290 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.2 x 10-10 1630 987 337 197 62.29% 36.89% 2617 534 TAIR8 Avg. embryo expression (dissected): '9092.55'
Avg. embryo expression (LCM): '7656.69'
AT5G20290 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.9029 x 10-2 133 98 57.58% 231 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20290 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.48 x 10-3 1027 692 59.74% 1719 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20290 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 1498 288 83.87% 1786 TAIR8 Mutant effect: 'N/A (not a MEG)'