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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G63900 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '10.4077'
Avg. expression score in LCM sample: '.881875'
Tissue used: 'full endosperm'
AT5G63900 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '6.2472'
Avg. embryo expression (LCM): '0'
AT5G63900 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63900 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63890 HDH endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63890 HDH endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '18.969'
Avg. expression score in LCM sample: '15.9325'
Tissue used: 'pure endosperm, no chalazal'
AT5G63890 HDH endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '20.7128'
Avg. expression score in LCM sample: '15.9325'
Tissue used: 'full endosperm'
AT5G63890 HDH embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '71.825'
Avg. embryo expression (LCM): '51.4148'
AT5G63890 HDH endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63890 HDH endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63880 VPS20.1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.1711 x 10-2 14 0 100.00% 14 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63880 VPS20.1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 1 1 0 1 50.00% 100.00% 2 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.645957'
Avg. expression score for this sample: '28.5148'
Avg. expression score in LCM sample: '16.785'
Tissue used: 'pure endosperm, no chalazal'
AT5G63880 VPS20.1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.33684 x 10-1 6 8 3 25 42.86% 89.29% 14 28 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.645957'
Avg. expression score for this sample: '68.3867'
Avg. expression score in LCM sample: '16.785'
Tissue used: 'full endosperm'
AT5G63880 VPS20.1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 2 2 0 1 50.00% 100.00% 4 1 TAIR8 Avg. embryo expression (dissected): '25.3714'
Avg. embryo expression (LCM): '17.9211'
AT5G63880 VPS20.1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.59931 x 10-1 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63880 VPS20.1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.81825 x 10-1 9 0 100.00% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63870 PP7 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 6.192 x 10-3 11 3 78.57% 14 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63870 PP7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.118881'
Avg. expression score for this sample: '96.7355'
Avg. expression score in LCM sample: '65.8908'
Tissue used: 'pure endosperm, no chalazal'
AT5G63870 PP7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.18881 x 10-1 0 5 2 1 0.00% 33.33% 5 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.118881'
Avg. expression score for this sample: '141.075'
Avg. expression score in LCM sample: '65.8908'
Tissue used: 'full endosperm'
AT5G63870 PP7 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 0 1 0 2 0.00% 100.00% 1 2 TAIR8 Avg. embryo expression (dissected): '92.8838'
Avg. embryo expression (LCM): '119.206'
AT5G63870 PP7 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.77778 x 10-1 1 1 50.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63870 PP7 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.522 x 10-2 8 2 80.00% 10 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63860 UVR8 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '826.66'
Avg. expression score in LCM sample: '188.956'
Tissue used: 'pure endosperm, no chalazal'
AT5G63860 UVR8 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '834.28'
Avg. expression score in LCM sample: '188.956'
Tissue used: 'full endosperm'
AT5G63860 UVR8 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '856.076'
Avg. embryo expression (LCM): '492.799'
AT5G63860 UVR8 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63860 UVR8 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63860 UVR8 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63850 AAP4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.278711'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G63850 AAP4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1.45246'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G63850 AAP4 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.473351'
Avg. embryo expression (LCM): '2.04705'
AT5G63850 AAP4 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63850 AAP4 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63850 AAP4 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63840 RSW3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.50603 x 10-1 461 408 223 905 53.05% 80.23% 869 1128 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '6.3e-20'
Avg. expression score for this sample: '457.245'
Avg. expression score in LCM sample: '412.335'
Tissue used: 'pure endosperm, no chalazal'
AT5G63840 RSW3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.8 x 10-28 674 368 293 1811 64.68% 86.07% 1042 2104 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '6.3e-20'
Avg. expression score for this sample: '395.107'
Avg. expression score in LCM sample: '412.335'
Tissue used: 'full endosperm'
AT5G63840 RSW3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.305 x 10-3 427 643 111 185 39.91% 62.50% 1070 296 TAIR8 Avg. embryo expression (dissected): '389.944'
Avg. embryo expression (LCM): '307.246'
AT5G63840 RSW3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.5 x 10-5 385 75 83.70% 460 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63840 RSW3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 3685 393 90.36% 4078 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63840 RSW3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 2304 268 89.58% 2572 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63830 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.06051 x 10-1 33 40 12 62 45.21% 83.78% 73 74 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.230198'
Avg. expression score for this sample: '47.2692'
Avg. expression score in LCM sample: '15.2564'
Tissue used: 'pure endosperm, no chalazal'
AT5G63830 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.0407 43 17 22 90 71.67% 80.36% 60 112 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.230198'
Avg. expression score for this sample: '44.3393'
Avg. expression score in LCM sample: '15.2564'
Tissue used: 'full endosperm'
AT5G63830 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.2692 x 10-2 34 67 16 11 33.66% 40.74% 101 27 TAIR8 Avg. embryo expression (dissected): '59.4944'
Avg. embryo expression (LCM): '47.1449'
AT5G63830 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.01062 x 10-1 22 3 88.00% 25 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63830 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.21655 x 10-1 151 77 66.23% 228 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63830 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.87825 x 10-1 99 33 75.00% 132 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63820 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.68925'
Avg. expression score in LCM sample: '4.37998'
Tissue used: 'pure endosperm, no chalazal'
AT5G63820 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 2 0 1 0 100.00% 0.00% 2 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.61024'
Avg. expression score in LCM sample: '4.37998'
Tissue used: 'full endosperm'
AT5G63820 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '2.40387'
Avg. embryo expression (LCM): '1.87123'
AT5G63820 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63820 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63820 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63810 BGAL10 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.6718 x 10-2 25 50 15 60 33.33% 80.00% 75 75 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.211649'
Avg. expression score for this sample: '35.551'
Avg. expression score in LCM sample: '16.4617'
Tissue used: 'pure endosperm, no chalazal'
AT5G63810 BGAL10 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 13 20 21 68 39.39% 76.40% 33 89 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.211649'
Avg. expression score for this sample: '23.3445'
Avg. expression score in LCM sample: '16.4617'
Tissue used: 'full endosperm'
AT5G63810 BGAL10 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.203 x 10-3 90 194 29 57 31.69% 66.28% 284 86 TAIR8 Avg. embryo expression (dissected): '171.335'
Avg. embryo expression (LCM): '151.77'
AT5G63810 BGAL10 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.4 x 10-8 46 1 97.87% 47 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63810 BGAL10 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.46016 x 10-1 34 13 72.34% 47 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63810 BGAL10 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 7.349 x 10-2 9 13 40.91% 22 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63800 MUM2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.0 439 1 1 389 99.77% 99.74% 440 390 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '160.537'
Avg. expression score in LCM sample: '9.68593'
Tissue used: 'pure endosperm, no chalazal'
AT5G63800 MUM2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.0 416 12 10 1032 97.20% 99.04% 428 1042 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '253.336'
Avg. expression score in LCM sample: '9.68593'
Tissue used: 'full endosperm'
AT5G63800 MUM2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.5 x 10-7 60 11 6 25 84.51% 80.65% 71 31 TAIR8 Avg. embryo expression (dissected): '35.3256'
Avg. embryo expression (LCM): '.979569'
AT5G63800 MUM2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.65043 x 10-1 442 1 99.77% 443 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63800 MUM2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.43 x 10-3 2444 56 97.76% 2500 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63800 MUM2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 2327 25 98.94% 2352 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63790 NAC102 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 3 4 0 3 42.86% 100.00% 7 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.740723'
Avg. expression score for this sample: '89.2225'
Avg. expression score in LCM sample: '7.83399'
Tissue used: 'pure endosperm, no chalazal'
AT5G63790 NAC102 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.95538 x 10-1 15 7 14 39 68.18% 73.58% 22 53 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.740723'
Avg. expression score for this sample: '165.579'
Avg. expression score in LCM sample: '7.83399'
Tissue used: 'full endosperm'
AT5G63790 NAC102 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.08392 x 10-1 4 2 0 2 66.67% 100.00% 6 2 TAIR8 Avg. embryo expression (dissected): '114.898'
Avg. embryo expression (LCM): '6.69372'
AT5G63790 NAC102 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63790 NAC102 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.2536 x 10-2 70 10 87.50% 80 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63790 NAC102 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.6 x 10-5 207 20 91.19% 227 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63780 SHA1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 14 5 3 5 73.68% 62.50% 19 8 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.668502'
Avg. expression score for this sample: '91.7453'
Avg. expression score in LCM sample: '40.0812'
Tissue used: 'pure endosperm, no chalazal'
AT5G63780 SHA1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.53614 x 10-1 12 5 1 7 70.59% 87.50% 17 8 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.668502'
Avg. expression score for this sample: '112.105'
Avg. expression score in LCM sample: '40.0812'
Tissue used: 'full endosperm'
AT5G63780 SHA1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.51186 x 10-1 10 6 2 2 62.50% 50.00% 16 4 TAIR8 Avg. embryo expression (dissected): '98.1431'
Avg. embryo expression (LCM): '50.6236'
AT5G63780 SHA1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63780 SHA1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.78197 x 10-1 62 35 63.92% 97 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63780 SHA1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.77237 x 10-1 57 11 83.82% 68 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63770 DGK2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '171.794'
Avg. expression score in LCM sample: '36.6272'
Tissue used: 'pure endosperm, no chalazal'
AT5G63770 DGK2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 1 0 2 0 100.00% 0.00% 1 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '250.282'
Avg. expression score in LCM sample: '36.6272'
Tissue used: 'full endosperm'
AT5G63770 DGK2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Avg. embryo expression (dissected): '51.4595'
Avg. embryo expression (LCM): '27.0763'
AT5G63770 DGK2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63770 DGK2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63770 DGK2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63760 ARI15 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.00223 x 10-1 232 173 92 330 57.28% 78.20% 405 422 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.003853'
Avg. expression score for this sample: '195.565'
Avg. expression score in LCM sample: '149.684'
Tissue used: 'pure endosperm, no chalazal'
AT5G63760 ARI15 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 9.37 x 10-4 326 139 182 542 70.11% 74.86% 465 724 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.003853'
Avg. expression score for this sample: '155.7'
Avg. expression score in LCM sample: '149.684'
Tissue used: 'full endosperm'
AT5G63760 ARI15 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.4271 x 10-1 144 189 48 82 43.24% 63.08% 333 130 TAIR8 Avg. embryo expression (dissected): '172.305'
Avg. embryo expression (LCM): '110.553'
AT5G63760 ARI15 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.06 x 10-3 88 15 85.44% 103 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63760 ARI15 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.60047 x 10-1 1088 472 69.74% 1560 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63760 ARI15 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 9.56 x 10-3 353 106 76.91% 459 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63750 ARI13 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 8 3 4 7 72.73% 63.64% 11 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.256526'
Avg. expression score for this sample: '19.7396'
Avg. expression score in LCM sample: '12.4491'
Tissue used: 'pure endosperm, no chalazal'
AT5G63750 ARI13 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.10621 x 10-1 20 2 7 18 90.91% 72.00% 22 25 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.256526'
Avg. expression score for this sample: '32.7552'
Avg. expression score in LCM sample: '12.4491'
Tissue used: 'full endosperm'
AT5G63750 ARI13 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Avg. embryo expression (dissected): '1.91785'
Avg. embryo expression (LCM): '0'
AT5G63750 ARI13 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.33817 x 10-1 7 0 100.00% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63750 ARI13 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.19536 x 10-1 105 54 66.04% 159 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63750 ARI13 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.4605 x 10-2 78 8 90.70% 86 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63740 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 PEG 8.2 x 10-16 3 28 55 7 9.68% 11.29% 31 62 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1.2e-10'
Avg. expression score for this sample: '40.1167'
Avg. expression score in LCM sample: '8.64237'
Tissue used: 'pure endosperm, no chalazal'
AT5G63740 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 PEG 1.0 13 6 4 9 68.42% 69.23% 19 13 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1.2e-10'
Avg. expression score for this sample: '6.94038'
Avg. expression score in LCM sample: '8.64237'
Tissue used: 'full endosperm'
AT5G63740 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 5 2 3 0 71.43% 0.00% 7 3 TAIR8 Avg. embryo expression (dissected): '7.36764'
Avg. embryo expression (LCM): '0'
AT5G63740 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63740 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.4 x 10-7 11420 12497 47.75% 23917 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G63740 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.7 x 10-5 1110 1391 44.38% 2501 TAIR8 Mutant effect: 'N/A (not a MEG)'