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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G20810 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.93407 x 10-1 90 36 72 86 71.43% 54.43% 126 158 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.318413'
Avg. expression score for this sample: '170.323'
Avg. expression score in LCM sample: '85.2479'
Tissue used: 'pure endosperm, no chalazal'
AT5G20810 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.89829 x 10-1 98 39 59 86 71.53% 59.31% 137 145 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.318413'
Avg. expression score for this sample: '177.28'
Avg. expression score in LCM sample: '85.2479'
Tissue used: 'full endosperm'
AT5G20810 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 11 10 4 2 52.38% 33.33% 21 6 TAIR8 Avg. embryo expression (dissected): '24.9754'
Avg. embryo expression (LCM): '22.6054'
AT5G20810 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 7.869 x 10-3 15 22 40.54% 37 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20810 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.7206 x 10-2 86 28 75.44% 114 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20810 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.09602 x 10-1 27 9 75.00% 36 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20790 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.7 x 10-15 3173 1228 939 2502 72.10% 72.71% 4401 3441 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.2e-26'
Avg. expression score for this sample: '6202.62'
Avg. expression score in LCM sample: '1384.73'
Tissue used: 'pure endosperm, no chalazal'
AT5G20790 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.9 x 10-13 4635 1691 1348 2928 73.27% 68.48% 6326 4276 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.2e-26'
Avg. expression score for this sample: '6101.05'
Avg. expression score in LCM sample: '1384.73'
Tissue used: 'full endosperm'
AT5G20790 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.48112 x 10-1 135 260 40 116 34.18% 74.36% 395 156 TAIR8 Avg. embryo expression (dissected): '683.209'
Avg. embryo expression (LCM): '109.862'
AT5G20790 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 861 803 51.74% 1664 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20790 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.1 x 10-7 193 29 86.94% 222 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20790 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.746 x 10-3 231 61 79.11% 292 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20740 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 2 0 2 0 100.00% 0.00% 2 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.4489'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20740 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 7 3 0 0 70.00% 10 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.74759'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20740 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.49845 x 10-1 0 8 0 2 0.00% 100.00% 8 2 TAIR8 Avg. embryo expression (dissected): '6.07153'
Avg. embryo expression (LCM): '17.8081'
AT5G20740 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20740 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 3 2 60.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20740 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.49482 x 10-1 6 7 46.15% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20736 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20736 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20736 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G20736 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20736 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20736 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20730 NPH4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.9279 x 10-2 49 22 12 61 69.01% 83.56% 71 73 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.3e-08'
Avg. expression score for this sample: '33.7203'
Avg. expression score in LCM sample: '7.46654'
Tissue used: 'pure endosperm, no chalazal'
AT5G20730 NPH4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.7 x 10-8 168 32 24 137 84.00% 85.09% 200 161 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.3e-08'
Avg. expression score for this sample: '53.6609'
Avg. expression score in LCM sample: '7.46654'
Tissue used: 'full endosperm'
AT5G20730 NPH4 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 104 110 43 51 48.60% 54.26% 214 94 TAIR8 Avg. embryo expression (dissected): '113.872'
Avg. embryo expression (LCM): '46.4291'
AT5G20730 NPH4 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 8.7627 x 10-2 39 3 92.86% 42 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20730 NPH4 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.2 x 10-11 234 5 97.91% 239 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20730 NPH4 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.3 x 10-19 524 11 97.94% 535 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20720 CPN20 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.50057 x 10-1 36 12 20 18 75.00% 47.37% 48 38 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.126693'
Avg. expression score for this sample: '452.445'
Avg. expression score in LCM sample: '97.5795'
Tissue used: 'pure endosperm, no chalazal'
AT5G20720 CPN20 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 9.9078 x 10-2 29 20 23 21 59.18% 47.73% 49 44 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.126693'
Avg. expression score for this sample: '408.614'
Avg. expression score in LCM sample: '97.5795'
Tissue used: 'full endosperm'
AT5G20720 CPN20 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.51692 x 10-1 98 54 27 12 64.47% 30.77% 152 39 TAIR8 Avg. embryo expression (dissected): '1334.72'
Avg. embryo expression (LCM): '1292.34'
AT5G20720 CPN20 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.29735 x 10-1 8 3 72.73% 11 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20720 CPN20 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.17859 x 10-1 13 8 61.90% 21 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20720 CPN20 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.03 x 10-4 49 10 83.05% 59 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20710 BGAL7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 5.17089 x 10-1 77 53 6 63 59.23% 91.30% 130 69 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.101774'
Avg. expression score for this sample: '17.9748'
Avg. expression score in LCM sample: '80.4858'
Tissue used: 'pure endosperm, no chalazal'
AT5G20710 BGAL7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.1442 x 10-2 28 0 9 22 100.00% 70.97% 28 31 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.101774'
Avg. expression score for this sample: '4.37651'
Avg. expression score in LCM sample: '80.4858'
Tissue used: 'full endosperm'
AT5G20710 BGAL7 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.34842 x 10-1 2 1 6 0 66.67% 0.00% 3 6 TAIR8 Avg. embryo expression (dissected): '2.49232'
Avg. embryo expression (LCM): '0'
AT5G20710 BGAL7 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.455 x 10-2 16 0 100.00% 16 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20710 BGAL7 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.4 x 10-13 4861 4629 51.22% 9490 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20710 BGAL7 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.00499 x 10-1 6182 1827 77.19% 8009 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20700 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.4 x 10-13 89 2 3 65 97.80% 95.59% 91 68 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '72.7316'
Avg. expression score in LCM sample: '23.4138'
Tissue used: 'pure endosperm, no chalazal'
AT5G20700 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.0 551 18 14 607 96.84% 97.75% 569 621 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '551.979'
Avg. expression score in LCM sample: '23.4138'
Tissue used: 'full endosperm'
AT5G20700 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 24 34 7 18 41.38% 72.00% 58 25 TAIR8 Avg. embryo expression (dissected): '52.5528'
Avg. embryo expression (LCM): '49.4808'
AT5G20700 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 156 4 97.50% 160 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20700 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 x 10-5 643 1 99.84% 644 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20700 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 9.0 x 10-6 1146 6 99.48% 1152 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20690 PRK6 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.788137'
Avg. expression score in LCM sample: '2.23408'
Tissue used: 'pure endosperm, no chalazal'
AT5G20690 PRK6 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.64029'
Avg. expression score in LCM sample: '2.23408'
Tissue used: 'full endosperm'
AT5G20690 PRK6 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.146775'
Avg. embryo expression (LCM): '0'
AT5G20690 PRK6 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20690 PRK6 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20690 PRK6 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20680 TBL16 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 13 3 6 4 81.25% 40.00% 16 10 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.621949'
Avg. expression score for this sample: '106.723'
Avg. expression score in LCM sample: '122.375'
Tissue used: 'pure endosperm, no chalazal'
AT5G20680 TBL16 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.50263 x 10-1 19 11 11 13 63.33% 54.17% 30 24 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.621949'
Avg. expression score for this sample: '70.3082'
Avg. expression score in LCM sample: '122.375'
Tissue used: 'full endosperm'
AT5G20680 TBL16 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 7.03567 x 10-1 9 5 0 0 64.29% 14 0 TAIR8 Avg. embryo expression (dissected): '135.095'
Avg. embryo expression (LCM): '102.453'
AT5G20680 TBL16 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.8945 x 10-1 3 0 100.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20680 TBL16 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 7.07794 x 10-1 4 4 50.00% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20680 TBL16 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 7.7298 x 10-2 13 2 86.67% 15 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20670 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 0 0 0 1 100.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.34322'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20670 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20670 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G20670 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20670 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20670 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20660 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.17343 x 10-1 380 210 316 756 64.41% 70.52% 590 1072 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000094'
Avg. expression score for this sample: '437.512'
Avg. expression score in LCM sample: '194.071'
Tissue used: 'pure endosperm, no chalazal'
AT5G20660 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.5 x 10-5 587 237 305 879 71.24% 74.24% 824 1184 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000094'
Avg. expression score for this sample: '428.274'
Avg. expression score in LCM sample: '194.071'
Tissue used: 'full endosperm'
AT5G20660 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 5.07881 x 10-1 393 460 141 174 46.07% 55.24% 853 315 TAIR8 Avg. embryo expression (dissected): '412.046'
Avg. embryo expression (LCM): '149.409'
AT5G20660 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 6.4 x 10-15 171 10 94.48% 181 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20660 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.7 x 10-16 662 123 84.33% 785 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20660 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 961 74 92.85% 1035 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20650 COPT5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '405.559'
Avg. expression score in LCM sample: '258.551'
Tissue used: 'pure endosperm, no chalazal'
AT5G20650 COPT5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '439.926'
Avg. expression score in LCM sample: '258.551'
Tissue used: 'full endosperm'
AT5G20650 COPT5 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '157.749'
Avg. embryo expression (LCM): '147.852'
AT5G20650 COPT5 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20650 COPT5 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20650 COPT5 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20640 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 2 0 0 0 100.00% 2 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '4.6523'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20640 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 0 2 1 4 0.00% 80.00% 2 5 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '7.94906'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20640 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Avg. embryo expression (dissected): '6.84491'
Avg. embryo expression (LCM): '5.32484'
AT5G20640 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20640 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 9 3 75.00% 12 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20640 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.96503 x 10-1 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20635 AGG3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 0 0 1 0 0.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.669921'
Avg. expression score for this sample: '187.53'
Avg. expression score in LCM sample: '90.7743'
Tissue used: 'pure endosperm, no chalazal'
AT5G20635 AGG3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.09859 x 10-1 3 3 2 2 50.00% 50.00% 6 4 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.669921'
Avg. expression score for this sample: '84.8029'
Avg. expression score in LCM sample: '90.7743'
Tissue used: 'full endosperm'
AT5G20635 AGG3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 1 0 0 50.00% 2 0 TAIR8 Avg. embryo expression (dissected): '323.643'
Avg. embryo expression (LCM): '142.829'
AT5G20635 AGG3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20635 AGG3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20635 AGG3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20630 GER3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G20630 GER3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G20630 GER3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G20630 GER3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20630 GER3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20630 GER3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G20620 UBQ4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.74775 x 10-1 24 14 12 57 63.16% 82.61% 38 69 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000017'
Avg. expression score for this sample: '144.894'
Avg. expression score in LCM sample: '119.435'
Tissue used: 'pure endosperm, no chalazal'
AT5G20620 UBQ4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.1 x 10-5 89 61 43 290 59.33% 87.09% 150 333 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000017'
Avg. expression score for this sample: '241.42'
Avg. expression score in LCM sample: '119.435'
Tissue used: 'full endosperm'
AT5G20620 UBQ4 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.23597 x 10-1 17 23 9 3 42.50% 25.00% 40 12 TAIR8 Avg. embryo expression (dissected): '184.036'
Avg. embryo expression (LCM): '235.31'
AT5G20620 UBQ4 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.715 x 10-3 60 4 93.75% 64 TAIR8 Mutant effect: 'N/A (not a MEG)'