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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G23270 STP11 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.66298 x 10-1 8 0 20 14 100.00% 41.18% 8 34 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.02236'
Avg. expression score for this sample: '11.5051'
Avg. expression score in LCM sample: '4.60045'
Tissue used: 'pure endosperm, no chalazal'
AT5G23270 STP11 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.3857 x 10-2 27 15 21 10 64.29% 32.26% 42 31 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.02236'
Avg. expression score for this sample: '8.05616'
Avg. expression score in LCM sample: '4.60045'
Tissue used: 'full endosperm'
AT5G23270 STP11 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 1 2 66.67% 0 3 TAIR8 Avg. embryo expression (dissected): '2.00454'
Avg. embryo expression (LCM): '0'
AT5G23270 STP11 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23270 STP11 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.15385 x 10-1 1 2 33.33% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23270 STP11 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.3353 x 10-2 0 7 0.00% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23260 TT16 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.02211 x 10-1 13 0 3 8 100.00% 72.73% 13 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '3.8e-16'
Avg. expression score for this sample: '14.2795'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G23260 TT16 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.2 x 10-17 97 0 1 57 100.00% 98.28% 97 58 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '3.8e-16'
Avg. expression score for this sample: '61.5285'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G23260 TT16 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 1 0 0.00% 0 1 TAIR8 Avg. embryo expression (dissected): '.824404'
Avg. embryo expression (LCM): '0'
AT5G23260 TT16 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.82592 x 10-1 47 0 100.00% 47 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23260 TT16 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.17651 x 10-1 78 0 100.00% 78 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23260 TT16 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.7009 x 10-2 314 0 100.00% 314 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23250 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.35364 x 10-1 30 18 15 18 62.50% 54.55% 48 33 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.592956'
Avg. expression score for this sample: '51.0866'
Avg. expression score in LCM sample: '19.9892'
Tissue used: 'pure endosperm, no chalazal'
AT5G23250 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.15327 x 10-1 31 19 9 62 62.00% 87.32% 50 71 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.592956'
Avg. expression score for this sample: '68.8854'
Avg. expression score in LCM sample: '19.9892'
Tissue used: 'full endosperm'
AT5G23250 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.19363 x 10-1 21 32 8 12 39.62% 60.00% 53 20 TAIR8 Avg. embryo expression (dissected): '91.0517'
Avg. embryo expression (LCM): '97.329'
AT5G23250 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 7.0396 x 10-2 6 8 42.86% 14 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23250 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.531 x 10-2 133 31 81.10% 164 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23250 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.5494 x 10-2 112 25 81.75% 137 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23240 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.47 x 10-4 19 0 0 13 100.00% 100.00% 19 13 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.1e-16'
Avg. expression score for this sample: '7.99508'
Avg. expression score in LCM sample: '4.30649'
Tissue used: 'pure endosperm, no chalazal'
AT5G23240 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.7 x 10-13 75 0 1 43 100.00% 97.73% 75 44 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.1e-16'
Avg. expression score for this sample: '23.0352'
Avg. expression score in LCM sample: '4.30649'
Tissue used: 'full endosperm'
AT5G23240 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G23240 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.6461 x 10-1 24 1 96.00% 25 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23240 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.2 x 10-8 222 42 84.09% 264 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23240 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.147 x 10-3 363 29 92.60% 392 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23230 NIC2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.46775'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G23230 NIC2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 5 1 0 0 83.33% 6 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '10.7877'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G23230 NIC2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '1.19474'
Avg. embryo expression (LCM): '0'
AT5G23230 NIC2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23230 NIC2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 6 1 85.71% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23230 NIC2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23220 NIC3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 0 0 1 0 0.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.302912'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G23220 NIC3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.420763'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G23220 NIC3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G23220 NIC3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23220 NIC3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23220 NIC3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23212 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '2.30535'
Avg. expression score in LCM sample: '6.49648'
Tissue used: 'pure endosperm, no chalazal'
AT5G23212 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '5.17654'
Avg. expression score in LCM sample: '6.49648'
Tissue used: 'full endosperm'
AT5G23212 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G23212 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23212 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23212 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23210 SCPL34 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.2 x 10-9 72 2 0 26 97.30% 100.00% 74 26 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '25.3115'
Avg. expression score in LCM sample: '3.08656'
Tissue used: 'pure endosperm, no chalazal'
AT5G23210 SCPL34 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.0 211 0 1 310 100.00% 99.68% 211 311 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '79.502'
Avg. expression score in LCM sample: '3.08656'
Tissue used: 'full endosperm'
AT5G23210 SCPL34 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 3 6 0 5 33.33% 100.00% 9 5 TAIR8 Avg. embryo expression (dissected): '5.27091'
Avg. embryo expression (LCM): '0'
AT5G23210 SCPL34 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 98 0 100.00% 98 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23210 SCPL34 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 514 202 71.79% 716 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23210 SCPL34 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 7.7 x 10-8 2005 92 95.61% 2097 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23200 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.57818 x 10-1 26 9 13 23 74.29% 63.89% 35 36 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.132578'
Avg. expression score for this sample: '12.6749'
Avg. expression score in LCM sample: '10.7148'
Tissue used: 'pure endosperm, no chalazal'
AT5G23200 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 9.485 x 10-2 28 9 15 57 75.68% 79.17% 37 72 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.132578'
Avg. expression score for this sample: '14.4117'
Avg. expression score in LCM sample: '10.7148'
Tissue used: 'full endosperm'
AT5G23200 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.84976 x 10-1 26 39 7 2 40.00% 22.22% 65 9 TAIR8 Avg. embryo expression (dissected): '17.3665'
Avg. embryo expression (LCM): '21.651'
AT5G23200 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.14094 x 10-1 8 4 66.67% 12 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23200 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.57458 x 10-1 35 6 85.37% 41 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23200 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.70534 x 10-1 25 15 62.50% 40 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23190 CYP86B1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.2333 x 10-2 25 17 22 12 59.52% 35.29% 42 34 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '29.8903'
Avg. expression score in LCM sample: '25.0452'
Tissue used: 'pure endosperm, no chalazal'
AT5G23190 CYP86B1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.0 57 3 51 1454 95.00% 96.61% 60 1505 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '546.415'
Avg. expression score in LCM sample: '25.0452'
Tissue used: 'full endosperm'
AT5G23190 CYP86B1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.7878 x 10-2 121 62 38 21 66.12% 35.59% 183 59 TAIR8 Avg. embryo expression (dissected): '170.854'
Avg. embryo expression (LCM): '226.18'
AT5G23190 CYP86B1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 40 2 95.24% 42 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23190 CYP86B1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.4 x 10-8 393 1 99.75% 394 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23190 CYP86B1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.231 x 10-3 411 9 97.86% 420 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23180 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G23180 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.401752'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G23180 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Avg. embryo expression (dissected): '1.39578'
Avg. embryo expression (LCM): '12.0814'
AT5G23180 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23180 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 2 2 50.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23180 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 3 25.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23170 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.883 x 10-3 300 43 88 103 87.46% 53.93% 343 191 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '128.417'
Avg. expression score in LCM sample: '19.9745'
Tissue used: 'pure endosperm, no chalazal'
AT5G23170 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.0 838 41 20 190 95.34% 90.48% 879 210 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '190.036'
Avg. expression score in LCM sample: '19.9745'
Tissue used: 'full endosperm'
AT5G23170 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.337 x 10-2 28 5 13 10 84.85% 43.48% 33 23 TAIR8 Avg. embryo expression (dissected): '24.7548'
Avg. embryo expression (LCM): '8.02493'
AT5G23170 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.1 x 10-7 25 19 56.82% 44 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23170 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.9 x 10-23 23 43 34.85% 66 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23170 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.1 x 10-14 308 1 99.68% 309 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23160 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1.29047'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G23160 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '3.77437'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G23160 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.578906'
Avg. embryo expression (LCM): '1.25586'
AT5G23160 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23160 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23160 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23155 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '43.7321'
Avg. expression score in LCM sample: '6.71695'
Tissue used: 'pure endosperm, no chalazal'
AT5G23155 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '90.1349'
Avg. expression score in LCM sample: '6.71695'
Tissue used: 'full endosperm'
AT5G23155 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '39.9402'
Avg. embryo expression (LCM): '11.466'
AT5G23155 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23155 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23155 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23150 HUA2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.03396 x 10-1 63 26 39 85 70.79% 68.55% 89 124 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.142451'
Avg. expression score for this sample: '115.447'
Avg. expression score in LCM sample: '70.5794'
Tissue used: 'pure endosperm, no chalazal'
AT5G23150 HUA2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.9952 x 10-2 62 21 13 46 74.70% 77.97% 83 59 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.142451'
Avg. expression score for this sample: '197.049'
Avg. expression score in LCM sample: '70.5794'
Tissue used: 'full endosperm'
AT5G23150 HUA2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 5.85919 x 10-1 32 37 21 17 46.38% 44.74% 69 38 TAIR8 Avg. embryo expression (dissected): '125.928'
Avg. embryo expression (LCM): '101.951'
AT5G23150 HUA2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 20 8 71.43% 28 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23150 HUA2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 7.0628 x 10-1 75 26 74.26% 101 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23150 HUA2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 7.2 x 10-5 142 20 87.65% 162 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23140 NCLPP7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0314 x 10-1 3 7 5 4 30.00% 44.44% 10 9 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.472455'
Avg. expression score for this sample: '42.4129'
Avg. expression score in LCM sample: '26.03'
Tissue used: 'pure endosperm, no chalazal'
AT5G23140 NCLPP7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.11194 x 10-1 6 0 4 8 100.00% 66.67% 6 12 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.472455'
Avg. expression score for this sample: '60.9921'
Avg. expression score in LCM sample: '26.03'
Tissue used: 'full endosperm'
AT5G23140 NCLPP7 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 15 16 2 3 48.39% 60.00% 31 5 TAIR8 Avg. embryo expression (dissected): '82.8548'
Avg. embryo expression (LCM): '73.5681'
AT5G23140 NCLPP7 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 2 2 50.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23140 NCLPP7 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 9.5534 x 10-2 31 10 75.61% 41 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23140 NCLPP7 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.7111 x 10-2 11 1 91.67% 12 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G23130 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.35353 x 10-1 11 5 6 21 68.75% 77.78% 16 27 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.489754'
Avg. expression score for this sample: '60.2032'
Avg. expression score in LCM sample: '54.9702'
Tissue used: 'pure endosperm, no chalazal'
AT5G23130 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 30 6 18 22 83.33% 55.00% 36 40 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.489754'
Avg. expression score for this sample: '61.2195'
Avg. expression score in LCM sample: '54.9702'
Tissue used: 'full endosperm'
AT5G23130 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.40071 x 10-1 3 8 2 1 27.27% 33.33% 11 3 TAIR8 Avg. embryo expression (dissected): '38.3691'
Avg. embryo expression (LCM): '23.1203'
AT5G23130 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.5455 x 10-2 12 0 100.00% 12 TAIR8 Mutant effect: 'N/A (not a MEG)'