| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G24770 | VSP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT5G24770 | VSP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24770 | VSP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24770 | VSP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.10672 x 10-1 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.54824 x 10-1 | 50 | 11 | 12 | 22 | 81.97% | 64.71% | 61 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.0e-14' Avg. expression score for this sample: '35.8043' Avg. expression score in LCM sample: '23.8547' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.0 x 10-15 | 174 | 13 | 33 | 197 | 93.05% | 85.65% | 187 | 230 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.0e-14' Avg. expression score for this sample: '116.389' Avg. expression score in LCM sample: '23.8547' Tissue used: 'full endosperm' |
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| AT5G24760 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.92449 x 10-1 | 69 | 55 | 15 | 14 | 55.65% | 48.28% | 124 | 29 | TAIR8 |
Avg. embryo expression (dissected): '94.155' Avg. embryo expression (LCM): '56.275' |
||||
| AT5G24760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.14592 x 10-1 | 63 | 4 | 94.03% | 67 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-5 | 190 | 6 | 96.94% | 196 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24760 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.4 x 10-24 | 608 | 1 | 99.84% | 609 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.27386 x 10-1 | 9 | 1 | 1 | 9 | 90.00% | 90.00% | 10 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.124634' Avg. expression score for this sample: '13.9483' Avg. expression score in LCM sample: '7.15788' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.27865 x 10-1 | 17 | 6 | 2 | 10 | 73.91% | 83.33% | 23 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.124634' Avg. expression score for this sample: '14.2211' Avg. expression score in LCM sample: '7.15788' Tissue used: 'full endosperm' |
|||||
| AT5G24750 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.81251 x 10-1 | 12 | 7 | 4 | 3 | 63.16% | 42.86% | 19 | 7 | TAIR8 |
Avg. embryo expression (dissected): '25.1121' Avg. embryo expression (LCM): '21.0607' |
||||
| AT5G24750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.27718 x 10-1 | 13 | 4 | 76.47% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24750 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.74636 x 10-1 | 30 | 5 | 85.71% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24740 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.20083 x 10-1 | 60 | 18 | 24 | 51 | 76.92% | 68.00% | 78 | 75 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00006' Avg. expression score for this sample: '14.2066' Avg. expression score in LCM sample: '13.6397' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G24740 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.6 x 10-5 | 277 | 82 | 66 | 211 | 77.16% | 76.17% | 359 | 277 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00006' Avg. expression score for this sample: '29.7562' Avg. expression score in LCM sample: '13.6397' Tissue used: 'full endosperm' |
|||||
| AT5G24740 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.41665 x 10-1 | 115 | 92 | 35 | 32 | 55.56% | 47.76% | 207 | 67 | TAIR8 |
Avg. embryo expression (dissected): '32.5543' Avg. embryo expression (LCM): '26.5363' |
||||
| AT5G24740 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.7929 x 10-2 | 43 | 25 | 63.24% | 68 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24740 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.62561 x 10-1 | 313 | 80 | 79.64% | 393 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24740 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.5 x 10-20 | 668 | 51 | 92.91% | 719 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24735 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 2218 | 94 | 511 | 229 | 95.93% | 30.95% | 2312 | 740 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1296.22' Avg. expression score in LCM sample: '148.743' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24735 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 3172 | 120 | 744 | 892 | 96.35% | 54.52% | 3292 | 1636 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1406.66' Avg. expression score in LCM sample: '148.743' Tissue used: 'full endosperm' |
|||||
| AT5G24735 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.0 | 1229 | 158 | 211 | 26 | 88.61% | 10.97% | 1387 | 237 | TAIR8 |
Avg. embryo expression (dissected): '954.659' Avg. embryo expression (LCM): '532.069' |
||||
| AT5G24735 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.8 x 10-16 | 211 | 127 | 62.43% | 338 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24735 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-5 | 485 | 167 | 74.39% | 652 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24735 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 3115 | 13 | 99.58% | 3128 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24710 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.22684 x 10-1 | 204 | 75 | 138 | 259 | 73.12% | 65.24% | 279 | 397 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00505' Avg. expression score for this sample: '338.012' Avg. expression score in LCM sample: '287.535' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24710 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.033 x 10-3 | 256 | 82 | 96 | 270 | 75.74% | 73.77% | 338 | 366 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00505' Avg. expression score for this sample: '272.944' Avg. expression score in LCM sample: '287.535' Tissue used: 'full endosperm' |
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| AT5G24710 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.95547 x 10-1 | 140 | 104 | 51 | 51 | 57.38% | 50.00% | 244 | 102 | TAIR8 |
Avg. embryo expression (dissected): '320.97' Avg. embryo expression (LCM): '184.059' |
||||
| AT5G24710 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.74528 x 10-1 | 49 | 16 | 75.38% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24710 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.268 x 10-3 | 383 | 103 | 78.81% | 486 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24710 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.4 x 10-21 | 558 | 64 | 89.71% | 622 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.41778 x 10-1 | 659 | 301 | 274 | 534 | 68.65% | 66.09% | 960 | 808 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.040621' Avg. expression score for this sample: '613.369' Avg. expression score in LCM sample: '425.975' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.9367 x 10-2 | 938 | 325 | 578 | 1106 | 74.27% | 65.68% | 1263 | 1684 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.040621' Avg. expression score for this sample: '545.16' Avg. expression score in LCM sample: '425.975' Tissue used: 'full endosperm' |
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| AT5G24690 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.2753 x 10-2 | 1428 | 1159 | 423 | 301 | 55.20% | 41.57% | 2587 | 724 | TAIR8 |
Avg. embryo expression (dissected): '1543.85' Avg. embryo expression (LCM): '1280.12' |
||||
| AT5G24690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.20351 x 10-1 | 230 | 94 | 70.99% | 324 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.5843 x 10-2 | 986 | 387 | 71.81% | 1373 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24690 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1493 | 310 | 82.81% | 1803 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.79052 x 10-1 | 22 | 24 | 16 | 31 | 47.83% | 65.96% | 46 | 47 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.7e-06' Avg. expression score for this sample: '21.3387' Avg. expression score in LCM sample: '16.5792' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.7 x 10-9 | 130 | 39 | 35 | 249 | 76.92% | 87.68% | 169 | 284 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.7e-06' Avg. expression score for this sample: '65.434' Avg. expression score in LCM sample: '16.5792' Tissue used: 'full endosperm' |
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| AT5G24680 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.23963 x 10-1 | 21 | 38 | 7 | 4 | 35.59% | 36.36% | 59 | 11 | TAIR8 |
Avg. embryo expression (dissected): '25.9446' Avg. embryo expression (LCM): '30.9946' |
||||
| AT5G24680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.68071 x 10-1 | 47 | 13 | 78.33% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.592 x 10-3 | 214 | 32 | 86.99% | 246 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24680 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.9215 x 10-2 | 146 | 26 | 84.88% | 172 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24670 | EMB2820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.96931 x 10-1 | 21 | 11 | 16 | 22 | 65.62% | 57.89% | 32 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.123435' Avg. expression score for this sample: '39.9107' Avg. expression score in LCM sample: '8.28962' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24670 | EMB2820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4506 x 10-2 | 61 | 12 | 12 | 41 | 83.56% | 77.36% | 73 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.123435' Avg. expression score for this sample: '48.9624' Avg. expression score in LCM sample: '8.28962' Tissue used: 'full endosperm' |
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| AT5G24670 | EMB2820 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.77864 x 10-1 | 42 | 25 | 9 | 7 | 62.69% | 43.75% | 67 | 16 | TAIR8 |
Avg. embryo expression (dissected): '90.3674' Avg. embryo expression (LCM): '55.9233' |
|||
| AT5G24670 | EMB2820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 2 | 77.78% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24670 | EMB2820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.7534 x 10-2 | 153 | 84 | 64.56% | 237 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24670 | EMB2820 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.3 x 10-9 | 293 | 22 | 93.02% | 315 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24660 | LSU2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.389847' Avg. expression score for this sample: '385.805' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24660 | LSU2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.84541 x 10-1 | 6 | 1 | 1 | 6 | 85.71% | 85.71% | 7 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.389847' Avg. expression score for this sample: '415.825' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G24660 | LSU2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '190.718' Avg. embryo expression (LCM): '9.05473' |
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| AT5G24660 | LSU2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24660 | LSU2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.64553 x 10-1 | 19 | 1 | 95.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24660 | LSU2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.483 x 10-3 | 454 | 2 | 99.56% | 456 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24655 | LSU4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230769' Avg. expression score for this sample: '49.0223' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24655 | LSU4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.30769 x 10-1 | 4 | 0 | 0 | 3 | 100.00% | 100.00% | 4 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230769' Avg. expression score for this sample: '313.789' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G24655 | LSU4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.8161' Avg. embryo expression (LCM): '0' |
|||||
| AT5G24655 | LSU4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24655 | LSU4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24655 | LSU4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.58272 x 10-1 | 26 | 12 | 13 | 18 | 68.42% | 58.06% | 38 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.024883' Avg. expression score for this sample: '449.898' Avg. expression score in LCM sample: '197.452' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.479 x 10-3 | 63 | 15 | 22 | 88 | 80.77% | 80.00% | 78 | 110 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.024883' Avg. expression score for this sample: '591.082' Avg. expression score in LCM sample: '197.452' Tissue used: 'full endosperm' |
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| AT5G24650 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.77398 x 10-1 | 34 | 30 | 10 | 10 | 53.12% | 50.00% | 64 | 20 | TAIR8 |
Avg. embryo expression (dissected): '680.46' Avg. embryo expression (LCM): '616.639' |
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| AT5G24650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.36509 x 10-1 | 10 | 5 | 66.67% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.62394 x 10-1 | 68 | 17 | 80.00% | 85 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24650 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.4 x 10-5 | 144 | 14 | 91.14% | 158 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G24640 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT5G24640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G24640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G24640 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G24630 | BIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 2 | 2 | 100.00% | 50.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.798387' Avg. expression score for this sample: '160.933' Avg. expression score in LCM sample: '30.2777' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24630 | BIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.78551 x 10-1 | 2 | 4 | 7 | 14 | 33.33% | 66.67% | 6 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.798387' Avg. expression score for this sample: '166.455' Avg. expression score in LCM sample: '30.2777' Tissue used: 'full endosperm' |
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| AT5G24630 | BIN4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 3 | 1 | 1 | 50.00% | 50.00% | 6 | 2 | TAIR8 |
Avg. embryo expression (dissected): '194.594' Avg. embryo expression (LCM): '105.14' |
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| AT5G24630 | BIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24630 | BIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 7 | 56.25% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24630 | BIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.69779 x 10-1 | 12 | 2 | 85.71% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.39911 x 10-1 | 126 | 59 | 50 | 131 | 68.11% | 72.38% | 185 | 181 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003613' Avg. expression score for this sample: '420.697' Avg. expression score in LCM sample: '48.7971' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.368 x 10-3 | 227 | 64 | 37 | 98 | 78.01% | 72.59% | 291 | 135 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003613' Avg. expression score for this sample: '329.98' Avg. expression score in LCM sample: '48.7971' Tissue used: 'full endosperm' |
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| AT5G24620 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.56705 x 10-1 | 196 | 180 | 92 | 83 | 52.13% | 47.43% | 376 | 175 | TAIR8 |
Avg. embryo expression (dissected): '1259.16' Avg. embryo expression (LCM): '219.938' |
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| AT5G24620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.25792 x 10-1 | 41 | 10 | 80.39% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.1 x 10-8 | 227 | 27 | 89.37% | 254 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24620 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-15 | 363 | 31 | 92.13% | 394 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 1 | 2 | 5 | 80.00% | 71.43% | 5 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.395103' Avg. expression score for this sample: '65.7302' Avg. expression score in LCM sample: '33.1144' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.69197 x 10-1 | 20 | 5 | 5 | 12 | 80.00% | 70.59% | 25 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.395103' Avg. expression score for this sample: '124.271' Avg. expression score in LCM sample: '33.1144' Tissue used: 'full endosperm' |
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| AT5G24610 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.22393 x 10-1 | 4 | 5 | 5 | 2 | 44.44% | 28.57% | 9 | 7 | TAIR8 |
Avg. embryo expression (dissected): '171.618' Avg. embryo expression (LCM): '201.188' |
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| AT5G24610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.03573 x 10-1 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24610 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.25088 x 10-1 | 24 | 2 | 92.31% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.2082 x 10-2 | 82 | 113 | 62 | 191 | 42.05% | 75.49% | 195 | 253 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01489' Avg. expression score for this sample: '102.076' Avg. expression score in LCM sample: '23.9282' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.1974 x 10-2 | 210 | 201 | 95 | 282 | 51.09% | 74.80% | 411 | 377 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01489' Avg. expression score for this sample: '145.395' Avg. expression score in LCM sample: '23.9282' Tissue used: 'full endosperm' |
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| AT5G24600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.8136 x 10-2 | 189 | 306 | 51 | 88 | 38.18% | 63.31% | 495 | 139 | TAIR8 |
Avg. embryo expression (dissected): '216.318' Avg. embryo expression (LCM): '57.7443' |
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| AT5G24600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.971 x 10-3 | 48 | 12 | 80.00% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-11 | 119 | 14 | 89.47% | 133 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.1478 x 10-1 | 251 | 159 | 61.22% | 410 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |