| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G25080 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 1 | 4 | 1 | 83.33% | 20.00% | 6 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.294912' Avg. expression score for this sample: '323.486' Avg. expression score in LCM sample: '92.5087' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G25080 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.24544 x 10-1 | 4 | 4 | 6 | 5 | 50.00% | 45.45% | 8 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.294912' Avg. expression score for this sample: '302.384' Avg. expression score in LCM sample: '92.5087' Tissue used: 'full endosperm' |
|||||
| AT5G25080 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.00323 x 10-1 | 7 | 3 | 0 | 1 | 70.00% | 100.00% | 10 | 1 | TAIR8 |
Avg. embryo expression (dissected): '440.555' Avg. embryo expression (LCM): '299.849' |
||||
| AT5G25080 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25080 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 8 | 52.94% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25080 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.9178 x 10-2 | 23 | 6 | 79.31% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.6067 x 10-2 | 357 | 156 | 130 | 342 | 69.59% | 72.46% | 513 | 472 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.2e-12' Avg. expression score for this sample: '314.19' Avg. expression score in LCM sample: '100.813' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G25070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.1 x 10-12 | 697 | 267 | 312 | 1121 | 72.30% | 78.23% | 964 | 1433 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.2e-12' Avg. expression score for this sample: '492.837' Avg. expression score in LCM sample: '100.813' Tissue used: 'full endosperm' |
|||||
| AT5G25070 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.83343 x 10-1 | 211 | 235 | 67 | 76 | 47.31% | 53.15% | 446 | 143 | TAIR8 |
Avg. embryo expression (dissected): '307.087' Avg. embryo expression (LCM): '160.197' |
||||
| AT5G25070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.59298 x 10-1 | 125 | 32 | 79.62% | 157 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-8 | 1646 | 384 | 81.08% | 2030 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25070 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1791 | 259 | 87.37% | 2050 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25060 | RRC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.51239 x 10-1 | 211 | 98 | 105 | 228 | 68.28% | 68.47% | 309 | 333 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004758' Avg. expression score for this sample: '622.157' Avg. expression score in LCM sample: '117.51' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G25060 | RRC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.876 x 10-3 | 349 | 100 | 171 | 388 | 77.73% | 69.41% | 449 | 559 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004758' Avg. expression score for this sample: '391.091' Avg. expression score in LCM sample: '117.51' Tissue used: 'full endosperm' |
||||
| AT5G25060 | RRC1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.86844 x 10-1 | 202 | 155 | 54 | 40 | 56.58% | 42.55% | 357 | 94 | TAIR8 |
Avg. embryo expression (dissected): '581.359' Avg. embryo expression (LCM): '373.781' |
|||
| AT5G25060 | RRC1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.04546 x 10-1 | 81 | 39 | 67.50% | 120 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G25060 | RRC1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.24705 x 10-1 | 617 | 230 | 72.85% | 847 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G25060 | RRC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.7 x 10-29 | 930 | 116 | 88.91% | 1046 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G25050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 1 | 0 | 100.00% | 0.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.711194' Avg. expression score for this sample: '1.64928' Avg. expression score in LCM sample: '2.16059' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G25050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.85082 x 10-1 | 5 | 1 | 2 | 8 | 83.33% | 80.00% | 6 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.711194' Avg. expression score for this sample: '9.70204' Avg. expression score in LCM sample: '2.16059' Tissue used: 'full endosperm' |
|||||
| AT5G25050 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 9 | 6 | 1 | 0 | 60.00% | 0.00% | 15 | 1 | TAIR8 |
Avg. embryo expression (dissected): '13.8793' Avg. embryo expression (LCM): '12.9479' |
||||
| AT5G25050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.06844 x 10-1 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25050 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.12931 x 10-1 | 14 | 0 | 100.00% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '.149426' Avg. expression score in LCM sample: '2.57214' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G25040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.44444 x 10-1 | 3 | 0 | 0 | 2 | 100.00% | 100.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '2.49919' Avg. expression score in LCM sample: '2.57214' Tissue used: 'full endosperm' |
|||||
| AT5G25040 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G25040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G25040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25040 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G25030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G25030 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G25030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G25030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G25030 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G25020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.8213 x 10-1 | 7 | 26 | 1 | 77 | 21.21% | 98.72% | 33 | 78 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002967' Avg. expression score for this sample: '48.4354' Avg. expression score in LCM sample: '18.196' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G25020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.053 x 10-3 | 5 | 10 | 2 | 66 | 33.33% | 97.06% | 15 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002967' Avg. expression score for this sample: '41.6113' Avg. expression score in LCM sample: '18.196' Tissue used: 'full endosperm' |
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| AT5G25020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.37995 x 10-1 | 23 | 77 | 1 | 38 | 23.00% | 97.44% | 100 | 39 | TAIR8 |
Avg. embryo expression (dissected): '122.406' Avg. embryo expression (LCM): '161.641' |
||||
| AT5G25020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.164 x 10-2 | 29 | 1 | 96.67% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-9 | 145 | 1 | 99.32% | 146 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-5 | 3 | 11 | 21.43% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.32391 x 10-1 | 20 | 0 | 2 | 0 | 100.00% | 0.00% | 20 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002329' Avg. expression score for this sample: '20.6251' Avg. expression score in LCM sample: '1.70496' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G25010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0239 x 10-2 | 31 | 0 | 3 | 1 | 100.00% | 25.00% | 31 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002329' Avg. expression score for this sample: '21.7673' Avg. expression score in LCM sample: '1.70496' Tissue used: 'full endosperm' |
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| AT5G25010 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.15 x 10-4 | 55 | 1 | 11 | 0 | 98.21% | 0.00% | 56 | 11 | TAIR8 |
Avg. embryo expression (dissected): '68.487' Avg. embryo expression (LCM): '55.4964' |
||||
| AT5G25010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.03448 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G25010 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.78225 x 10-1 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G25000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G25000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.495694' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G25000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.795402' Avg. embryo expression (LCM): '0' |
||||||
| AT5G25000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G25000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G25000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G24990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 9 | 2 | 3 | 2 | 81.82% | 40.00% | 11 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.628602' Avg. expression score for this sample: '16.6922' Avg. expression score in LCM sample: '7.62822' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.55682 x 10-1 | 39 | 10 | 11 | 10 | 79.59% | 47.62% | 49 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.628602' Avg. expression score for this sample: '41.8162' Avg. expression score in LCM sample: '7.62822' Tissue used: 'full endosperm' |
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| AT5G24990 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.30801 x 10-1 | 25 | 9 | 12 | 6 | 73.53% | 33.33% | 34 | 18 | TAIR8 |
Avg. embryo expression (dissected): '98.5766' Avg. embryo expression (LCM): '134.59' |
||||
| AT5G24990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.85565 x 10-1 | 2 | 2 | 50.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.05679 x 10-1 | 29 | 5 | 85.29% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24990 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.094 x 10-3 | 95 | 13 | 87.96% | 108 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '57.8953' Avg. expression score in LCM sample: '12.6696' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G24980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '72.774' Avg. expression score in LCM sample: '12.6696' Tissue used: 'full endosperm' |
|||||||
| AT5G24980 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '47.2539' Avg. embryo expression (LCM): '72.1741' |
|||||
| AT5G24980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G24980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G24980 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G24970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.7683 x 10-2 | 6 | 0 | 1 | 11 | 100.00% | 91.67% | 6 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.280579' Avg. expression score for this sample: '62.6031' Avg. expression score in LCM sample: '33.6435' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G24970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 1 | 1 | 1 | 50.00% | 50.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.280579' Avg. expression score for this sample: '90.6051' Avg. expression score in LCM sample: '33.6435' Tissue used: 'full endosperm' |
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| AT5G24970 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 3 | 0 | 0 | 40.00% | 5 | 0 | TAIR8 |
Avg. embryo expression (dissected): '80.5772' Avg. embryo expression (LCM): '54.3033' |
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| AT5G24970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G24970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.73913 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24970 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24960 | CYP71A14 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.871431' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24960 | CYP71A14 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.57856' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G24960 | CYP71A14 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.75286' Avg. embryo expression (LCM): '11.8051' |
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| AT5G24960 | CYP71A14 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24960 | CYP71A14 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24960 | CYP71A14 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24950 | CYP71A15 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24950 | CYP71A15 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 3 | 3 | 10 | 66.67% | 76.92% | 9 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '8.39957' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G24950 | CYP71A15 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.08392 x 10-1 | 5 | 2 | 0 | 0 | 71.43% | 7 | 0 | TAIR8 |
Avg. embryo expression (dissected): '6.63814' Avg. embryo expression (LCM): '0' |
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| AT5G24950 | CYP71A15 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24950 | CYP71A15 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24950 | CYP71A15 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 1 | 3 | 100.00% | 75.00% | 1 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.669921' Avg. expression score for this sample: '1.9407' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.42424 x 10-1 | 1 | 4 | 1 | 0 | 20.00% | 0.00% | 5 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.669921' Avg. expression score for this sample: '1.3336' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G24940 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 0 | 3 | 0.00% | 100.00% | 1 | 3 | TAIR8 |
Avg. embryo expression (dissected): '2.32356' Avg. embryo expression (LCM): '0' |
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| AT5G24940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G24940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24940 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.61538 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G24930 | COL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.41983 x 10-1 | 5199 | 2302 | 2783 | 5340 | 69.31% | 65.74% | 7501 | 8123 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001992' Avg. expression score for this sample: '4939.31' Avg. expression score in LCM sample: '317.519' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24930 | COL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.024 x 10-3 | 11386 | 5391 | 4116 | 8569 | 67.87% | 67.55% | 16777 | 12685 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001992' Avg. expression score for this sample: '5201.58' Avg. expression score in LCM sample: '317.519' Tissue used: 'full endosperm' |
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| AT5G24930 | COL4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.33726 x 10-1 | 4071 | 3117 | 2751 | 2030 | 56.64% | 42.46% | 7188 | 4781 | TAIR8 |
Avg. embryo expression (dissected): '6857.27' Avg. embryo expression (LCM): '1265.29' |
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| AT5G24930 | COL4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-14 | 1844 | 618 | 74.90% | 2462 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24930 | COL4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1895 | 273 | 87.41% | 2168 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24930 | COL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 4124 | 352 | 92.14% | 4476 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G24920 | GDU5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.14687 x 10-1 | 26 | 4 | 8 | 5 | 86.67% | 38.46% | 30 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.335492' Avg. expression score for this sample: '26.1691' Avg. expression score in LCM sample: '4.82092' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G24920 | GDU5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.78964 x 10-1 | 68 | 10 | 23 | 16 | 87.18% | 41.03% | 78 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.335492' Avg. expression score for this sample: '78.2479' Avg. expression score in LCM sample: '4.82092' Tissue used: 'full endosperm' |
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| AT5G24920 | GDU5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.93027 x 10-1 | 9 | 2 | 0 | 0 | 81.82% | 11 | 0 | TAIR8 |
Avg. embryo expression (dissected): '10.7391' Avg. embryo expression (LCM): '14.4172' |
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| AT5G24920 | GDU5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.088 x 10-3 | 3 | 8 | 27.27% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |