GehringPlant

Gene ID	Tissue	Study	Parent A	Parent B	Stage	Replicate	Replicate Imprinting Status	Overall Imprinting Status	Imprinting p-value	A x B, A counts	A x B, B counts	B x A, A counts	B x A, B counts	% Maternal AxB	% Maternal BxA	Tot Counts AxB	Tot Counts BxA	Genome Assembly	Notes
GRMZM2G080764	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.728026 x 10^-1	35	19	23	57	64.81%	71.25%	54	80	RefGen V2	χ2 p-value for B73 x Mo17: '.7728026' χ2 p-value for Mo17 x B73: '.3845049' Biased in favor of strain: ''
GRMZM2G080764	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.050589 x 10^-1	43	34	27	13	55.84%	32.50%	77	40	RefGen V2	χ2 p-value for B73 x Mo17: '.3050589' χ2 p-value for Mo17 x B73: '.0268567' Biased in favor of strain: ''
GRMZM2G080746	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.76 x 10^-20	845	466	757	438	64.45%	36.65%	1311	1195	RefGen V2	χ2 p-value for B73 x Mo17: '1.22e-25' χ2 p-value for Mo17 x B73: '2.76e-20' Biased in favor of strain: 'B73'
GRMZM2G080746	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.81 x 10^-7	390	116	260	265	77.08%	50.48%	506	525	RefGen V2	χ2 p-value for B73 x Mo17: '6.81e-07' χ2 p-value for Mo17 x B73: '3.56e-15' Biased in favor of strain: 'B73'
GRMZM2G080725	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.58 x 10^-6	199	48	144	60	80.57%	29.41%	247	204	RefGen V2	χ2 p-value for B73 x Mo17: '3.58e-06' χ2 p-value for Mo17 x B73: '1.51e-29' Biased in favor of strain: 'B73'
GRMZM2G080725	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.16 x 10^-14	247	106	227	74	69.97%	24.58%	353	301	RefGen V2	χ2 p-value for B73 x Mo17: '6.16e-14' χ2 p-value for Mo17 x B73: '1.16e-18' Biased in favor of strain: 'B73'
GRMZM2G080724	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.0275 x 10^-2	18	42	24	43	30.00%	64.18%	60	67	RefGen V2	χ2 p-value for B73 x Mo17: '.0019458' χ2 p-value for Mo17 x B73: '.020275' Biased in favor of strain: 'Mo17'
GRMZM2G080724	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.5459 x 10^-3	24	2	16	6	92.31%	27.27%	26	22	RefGen V2	χ2 p-value for B73 x Mo17: '.0055459' χ2 p-value for Mo17 x B73: '.0000887' Biased in favor of strain: 'B73'
GRMZM2G080696	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	6	1		14.29%	0	7	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G080696	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.472212 x 10^-1	37	32	31	26	53.62%	45.61%	69	57	RefGen V2	χ2 p-value for B73 x Mo17: '.5472212' χ2 p-value for Mo17 x B73: '.5078006' Biased in favor of strain: ''
GRMZM2G080689	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	1	0	0	0.00%		1	0	RefGen V2	χ2 p-value for B73 x Mo17: '.3173105' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G080689	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	1	1	7	0.00%	87.50%	1	8	RefGen V2	χ2 p-value for B73 x Mo17: '.1572964' χ2 p-value for Mo17 x B73: '.2112996' Biased in favor of strain: ''
GRMZM2G080652	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.8989 x 10^-3	938	389	531	884	70.69%	62.47%	1327	1415	RefGen V2	χ2 p-value for B73 x Mo17: '.0018989' χ2 p-value for Mo17 x B73: '.0008198' Biased in favor of strain: 'B73'
GRMZM2G080652	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.2634 x 10^-3	485	384	472	378	55.81%	44.47%	869	850	RefGen V2	χ2 p-value for B73 x Mo17: '.0006121' χ2 p-value for Mo17 x B73: '.0012634' Biased in favor of strain: 'B73'
GRMZM2G080650	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		1	4	2	14	20.00%	87.50%	5	16	RefGen V2	χ2 p-value for B73 x Mo17: '.1797125' χ2 p-value for Mo17 x B73: '.0026998' Biased in favor of strain: ''
GRMZM2G080650	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		2	6	0	12	25.00%	100.00%	8	12	RefGen V2	χ2 p-value for B73 x Mo17: '.0124186' χ2 p-value for Mo17 x B73: '.0143059' Biased in favor of strain: ''
GRMZM2G080644	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		3	2	2	9	60.00%	81.82%	5	11	RefGen V2	χ2 p-value for B73 x Mo17: '.7518208' χ2 p-value for Mo17 x B73: '.2864221' Biased in favor of strain: ''
GRMZM2G080644	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.166645 x 10^-1	9	1	9	17	90.00%	65.38%	10	26	RefGen V2	χ2 p-value for B73 x Mo17: '.011412' χ2 p-value for Mo17 x B73: '.1166645' Biased in favor of strain: ''
GRMZM2G080608	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	543	166	613	160	76.59%	20.70%	709	773	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G080608	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.06 x 10^-19	925	243	526	536	79.20%	50.47%	1168	1062	RefGen V2	χ2 p-value for B73 x Mo17: '1.06e-19' χ2 p-value for Mo17 x B73: '4.25e-29' Biased in favor of strain: 'B73'
GRMZM2G080603	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	1052358	163267	522080	307384	86.57%	37.06%	1215625	829464	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G080603	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	249746	105573	349908	180512	70.29%	34.03%	355319	530420	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G080588	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	515	142	441	116	78.39%	20.83%	657	557	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G080588	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.20676 x 10^-1	10	2	10	11	83.33%	52.38%	12	21	RefGen V2	χ2 p-value for B73 x Mo17: '.220676' χ2 p-value for Mo17 x B73: '.1649147' Biased in favor of strain: ''
GRMZM2G080586	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.919584 x 10^-1	91	50	44	104	64.54%	70.27%	141	148	RefGen V2	χ2 p-value for B73 x Mo17: '.5919584' χ2 p-value for Mo17 x B73: '.3523812' Biased in favor of strain: ''
GRMZM2G080586	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.65 x 10^-6	433	295	478	350	59.48%	42.27%	728	828	RefGen V2	χ2 p-value for B73 x Mo17: '3.14e-07' χ2 p-value for Mo17 x B73: '8.65e-06' Biased in favor of strain: 'B73'
GRMZM2G080583	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.835221 x 10^-1	84	94	78	87	47.19%	52.73%	178	165	RefGen V2	χ2 p-value for B73 x Mo17: '.4535368' χ2 p-value for Mo17 x B73: '.4835221' Biased in favor of strain: ''
GRMZM2G080583	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.173219 x 10^-1	24	8	12	15	75.00%	55.56%	32	27	RefGen V2	χ2 p-value for B73 x Mo17: '.3173219' χ2 p-value for Mo17 x B73: '.2206713' Biased in favor of strain: ''
GRMZM2G080567	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.29 x 10^-12	388	86	210	168	81.86%	44.44%	474	378	RefGen V2	χ2 p-value for B73 x Mo17: '2.29e-12' χ2 p-value for Mo17 x B73: '4.95e-20' Biased in favor of strain: 'B73'
GRMZM2G080567	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.32 x 10^-3	230	100	186	129	69.70%	40.95%	330	315	RefGen V2	χ2 p-value for B73 x Mo17: '8.29e-13' χ2 p-value for Mo17 x B73: '.00132' Biased in favor of strain: 'B73'
GRMZM2G080565	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	1197	546	1102	572	68.67%	34.17%	1743	1674	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '2.24e-38' Biased in favor of strain: 'B73'
GRMZM2G080565	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.27 x 10^-26	1370	370	727	837	78.74%	53.52%	1740	1564	RefGen V2	χ2 p-value for B73 x Mo17: '1.27e-26' χ2 p-value for Mo17 x B73: '2.68e-28' Biased in favor of strain: 'B73'
GRMZM2G080556	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.230637 x 10^-1	44	25	52	108	63.77%	67.50%	69	160	RefGen V2	χ2 p-value for B73 x Mo17: '.6094946' χ2 p-value for Mo17 x B73: '.8230637' Biased in favor of strain: ''
GRMZM2G080556	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		2	7	12	41	22.22%	77.36%	9	53	RefGen V2	χ2 p-value for B73 x Mo17: '.0955807' χ2 p-value for Mo17 x B73: '.0000679' Biased in favor of strain: ''
GRMZM2G080542	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.917578 x 10^-1	601	565	356	469	51.54%	56.85%	1166	825	RefGen V2	χ2 p-value for B73 x Mo17: '.2917578' χ2 p-value for Mo17 x B73: '.0000835' Biased in favor of strain: ''
GRMZM2G080542	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	9.540135 x 10^-1	400	199	217	398	66.78%	64.72%	599	615	RefGen V2	χ2 p-value for B73 x Mo17: '.9540135' χ2 p-value for Mo17 x B73: '.3046654' Biased in favor of strain: ''
GRMZM2G080530	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		1	0	0	0	100.00%		1	0	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G080530	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.30954 x 10^-1	21	18	31	6	53.85%	16.22%	39	37	RefGen V2	χ2 p-value for B73 x Mo17: '.630954' χ2 p-value for Mo17 x B73: '.0000396' Biased in favor of strain: ''
GRMZM2G080524	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.266305 x 10^-1	14	7	3	14	66.67%	82.35%	21	17	RefGen V2	χ2 p-value for B73 x Mo17: '.1266305' χ2 p-value for Mo17 x B73: '.0076329' Biased in favor of strain: ''
GRMZM2G080524	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.989405 x 10^-1	14	5	10	21	73.68%	67.74%	19	31	RefGen V2	χ2 p-value for B73 x Mo17: '.5164242' χ2 p-value for Mo17 x B73: '.8989405' Biased in favor of strain: ''
GRMZM2G080519	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	paternally biased	3.764 x 10^-4	64	60	223	44	51.61%	16.48%	124	267	RefGen V2	χ2 p-value for B73 x Mo17: '.0003764' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: ''
GRMZM2G080519	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.07 x 10^-19	370	163	340	142	69.42%	29.46%	533	482	RefGen V2	χ2 p-value for B73 x Mo17: '3.07e-19' χ2 p-value for Mo17 x B73: '1.90e-19' Biased in favor of strain: 'B73'
GRMZM2G080516	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.8431 x 10^-3	72	36	42	73	66.67%	63.48%	108	115	RefGen V2	χ2 p-value for B73 x Mo17: '.000532' χ2 p-value for Mo17 x B73: '.0038431' Biased in favor of strain: ''
GRMZM2G080516	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.748962 x 10^-1	281	151	154	189	65.05%	55.10%	432	343	RefGen V2	χ2 p-value for B73 x Mo17: '.4748962' χ2 p-value for Mo17 x B73: '5.53e-06' Biased in favor of strain: ''
GRMZM2G080512	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.71967 x 10^-2	31	6	28	14	83.78%	33.33%	37	42	RefGen V2	χ2 p-value for B73 x Mo17: '.0271967' χ2 p-value for Mo17 x B73: '4.59e-06' Biased in favor of strain: ''
GRMZM2G080512	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.9124 x 10^-3	52	27	44	15	65.82%	25.42%	79	59	RefGen V2	χ2 p-value for B73 x Mo17: '.0049124' χ2 p-value for Mo17 x B73: '.0001597' Biased in favor of strain: 'B73'
GRMZM2G080501	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.42 x 10^-9	28	98	31	97	22.22%	75.78%	126	128	RefGen V2	χ2 p-value for B73 x Mo17: '4.49e-10' χ2 p-value for Mo17 x B73: '5.42e-09' Biased in favor of strain: 'Mo17'
GRMZM2G080501	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.8326 x 10^-3	9	35	15	64	20.45%	81.01%	44	79	RefGen V2	χ2 p-value for B73 x Mo17: '7.89e-11' χ2 p-value for Mo17 x B73: '.0068326' Biased in favor of strain: 'Mo17'
GRMZM2G080499	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.63 x 10^-25	757	151	343	309	83.37%	47.39%	908	652	RefGen V2	χ2 p-value for B73 x Mo17: '1.30e-26' χ2 p-value for Mo17 x B73: '1.63e-25' Biased in favor of strain: 'B73'
GRMZM2G080499	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.06 x 10^-6	394	180	279	175	68.64%	38.55%	574	454	RefGen V2	χ2 p-value for B73 x Mo17: '4.18e-19' χ2 p-value for Mo17 x B73: '1.06e-06' Biased in favor of strain: 'B73'
GRMZM2G080497	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.13852 x 10^-2	131	100	149	102	56.71%	40.64%	231	251	RefGen V2	χ2 p-value for B73 x Mo17: '.0413852' χ2 p-value for Mo17 x B73: '.003011' Biased in favor of strain: 'B73'
GRMZM2G080497	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.711158 x 10^-1	64	26	42	63	71.11%	60.00%	90	105	RefGen V2	χ2 p-value for B73 x Mo17: '.3711158' χ2 p-value for Mo17 x B73: '.147299' Biased in favor of strain: ''
GRMZM2G080466	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	9.495705 x 10^-1	195	130	42	83	60.00%	66.40%	325	125	RefGen V2	χ2 p-value for B73 x Mo17: '.0107845' χ2 p-value for Mo17 x B73: '.9495705' Biased in favor of strain: ''
GRMZM2G080466	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	9.82 x 10^-12	693	1173	791	1086	37.14%	57.86%	1866	1877	RefGen V2	χ2 p-value for B73 x Mo17: '1.10e-28' χ2 p-value for Mo17 x B73: '9.82e-12' Biased in favor of strain: 'Mo17'
GRMZM2G080462	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.3996 x 10^-2	333	178	232	182	65.17%	43.96%	511	414	RefGen V2	χ2 p-value for B73 x Mo17: '7.04e-12' χ2 p-value for Mo17 x B73: '.013996' Biased in favor of strain: 'B73'
GRMZM2G080462	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.353 x 10^-3	180	58	108	101	75.63%	48.33%	238	209	RefGen V2	χ2 p-value for B73 x Mo17: '.003353' χ2 p-value for Mo17 x B73: '1.86e-08' Biased in favor of strain: 'B73'
GRMZM2G080452	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		1	2	3	4	33.33%	57.14%	3	7	RefGen V2	χ2 p-value for B73 x Mo17: '.2206667' χ2 p-value for Mo17 x B73: '.59298' Biased in favor of strain: ''
GRMZM2G080452	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		1	0	1	2	100.00%	66.67%	1	3	RefGen V2	χ2 p-value for B73 x Mo17: '.3173105' χ2 p-value for Mo17 x B73: '.5637029' Biased in favor of strain: ''
GRMZM2G080450	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.03668 x 10^-2	390	215	354	289	64.46%	44.95%	605	643	RefGen V2	χ2 p-value for B73 x Mo17: '1.12e-12' χ2 p-value for Mo17 x B73: '.0103668' Biased in favor of strain: 'B73'
GRMZM2G080450	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.741 x 10^-4	674	252	208	308	72.79%	59.69%	926	516	RefGen V2	χ2 p-value for B73 x Mo17: '.0000781' χ2 p-value for Mo17 x B73: '.0007741' Biased in favor of strain: 'B73'
GRMZM2G080439	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.73 x 10^-8	455	131	284	324	77.65%	53.29%	586	608	RefGen V2	χ2 p-value for B73 x Mo17: '1.73e-08' χ2 p-value for Mo17 x B73: '2.61e-12' Biased in favor of strain: 'B73'
GRMZM2G080439	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	9.56345 x 10^-2	319	240	228	265	57.07%	53.75%	559	493	RefGen V2	χ2 p-value for B73 x Mo17: '.0008337' χ2 p-value for Mo17 x B73: '.0956345' Biased in favor of strain: ''
GRMZM2G080387	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.078006 x 10^-1	26	31	20	28	45.61%	58.33%	57	48	RefGen V2	χ2 p-value for B73 x Mo17: '.5078006' χ2 p-value for Mo17 x B73: '.2482131' Biased in favor of strain: ''
GRMZM2G080387	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	0	0			0	0	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G080380	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	9.999996 x 10^-1	40	30	31	62	57.14%	66.67%	70	93	RefGen V2	χ2 p-value for B73 x Mo17: '.0909603' χ2 p-value for Mo17 x B73: '.9999996' Biased in favor of strain: ''
GRMZM2G080380	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	6.586874 x 10^-1	39	43	44	24	47.56%	35.29%	82	68	RefGen V2	χ2 p-value for B73 x Mo17: '.6586874' χ2 p-value for Mo17 x B73: '.0152934' Biased in favor of strain: ''
GRMZM2G080375	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.173105 x 10^-1	95	69	66	55	57.93%	45.45%	164	121	RefGen V2	χ2 p-value for B73 x Mo17: '.0423302' χ2 p-value for Mo17 x B73: '.3173105' Biased in favor of strain: ''
GRMZM2G080375	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.511133 x 10^-1	54	11	18	23	83.08%	56.10%	65	41	RefGen V2	χ2 p-value for B73 x Mo17: '.0050074' χ2 p-value for Mo17 x B73: '.1511133' Biased in favor of strain: ''
GRMZM2G080354	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.566 x 10^-4	58	8	46	28	87.88%	37.84%	66	74	RefGen V2	χ2 p-value for B73 x Mo17: '.0002566' χ2 p-value for Mo17 x B73: '1.43e-07' Biased in favor of strain: 'B73'
GRMZM2G080354	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.7019 x 10^-3	32	0	21	5	100.00%	19.23%	32	26	RefGen V2	χ2 p-value for B73 x Mo17: '1.54e-08' χ2 p-value for Mo17 x B73: '.0017019' Biased in favor of strain: 'B73'
GRMZM2G080349	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	1	1	0	0.00%	0.00%	1	1	RefGen V2	χ2 p-value for B73 x Mo17: '.3173105' χ2 p-value for Mo17 x B73: '.3173105' Biased in favor of strain: ''
GRMZM2G080349	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		2	0	0	0	100.00%		2	0	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G080320	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		5	3	5	4	62.50%	44.44%	8	9	RefGen V2	χ2 p-value for B73 x Mo17: '.8025764' χ2 p-value for Mo17 x B73: '.1572991' Biased in favor of strain: ''
GRMZM2G080320	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.159249 x 10^-1	71	57	96	62	55.47%	39.24%	128	158	RefGen V2	χ2 p-value for B73 x Mo17: '.2159249' χ2 p-value for Mo17 x B73: '.0068326' Biased in favor of strain: ''
GRMZM2G080314	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.71545 x 10^-2	139	102	126	81	57.68%	39.13%	241	207	RefGen V2	χ2 p-value for B73 x Mo17: '.0171545' χ2 p-value for Mo17 x B73: '.0017617' Biased in favor of strain: 'B73'
GRMZM2G080314	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.403878 x 10^-1	73	38	104	144	65.77%	58.06%	111	248	RefGen V2	χ2 p-value for B73 x Mo17: '.8403878' χ2 p-value for Mo17 x B73: '.0040571' Biased in favor of strain: ''
GRMZM2G080295	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		2	2	0	9	50.00%	100.00%	4	9	RefGen V2	χ2 p-value for B73 x Mo17: '.4794928' χ2 p-value for Mo17 x B73: '.0338949' Biased in favor of strain: ''
GRMZM2G080295	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	8.814974 x 10^-1	22	23	28	20	48.89%	41.67%	45	48	RefGen V2	χ2 p-value for B73 x Mo17: '.8814974' χ2 p-value for Mo17 x B73: '.2482131' Biased in favor of strain: ''
GRMZM2G080270	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.17 x 10^-23	660	346	633	302	65.61%	32.30%	1006	935	RefGen V2	χ2 p-value for B73 x Mo17: '4.17e-23' χ2 p-value for Mo17 x B73: '2.62e-27' Biased in favor of strain: 'B73'
GRMZM2G080270	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.0384 x 10^-2	21	3	8	4	87.50%	33.33%	24	12	RefGen V2	χ2 p-value for B73 x Mo17: '.030384' χ2 p-value for Mo17 x B73: '.0143059' Biased in favor of strain: ''
GRMZM2G080247	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	4	0	6	0.00%	100.00%	4	6	RefGen V2	χ2 p-value for B73 x Mo17: '.0046775' χ2 p-value for Mo17 x B73: '.0832645' Biased in favor of strain: ''
GRMZM2G080247	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.607 x 10^-4	5	25	0	16	16.67%	100.00%	30	16	RefGen V2	χ2 p-value for B73 x Mo17: '.0002607' χ2 p-value for Mo17 x B73: '.0000633' Biased in favor of strain: 'Mo17'
GRMZM2G080231	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	35	302	34	388	10.39%	91.94%	337	422	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'Mo17'
GRMZM2G080231	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		1	0	1	1	100.00%	50.00%	1	2	RefGen V2	χ2 p-value for B73 x Mo17: '.4795016' χ2 p-value for Mo17 x B73: '.617075' Biased in favor of strain: ''
GRMZM2G080222	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	3136	153	1522	249	95.35%	14.06%	3289	1771	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G080222	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	0.0	1898	117	1772	90	94.19%	4.83%	2015	1862	RefGen V2	χ2 p-value for B73 x Mo17: '0' χ2 p-value for Mo17 x B73: '0' Biased in favor of strain: 'B73'
GRMZM2G080191	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	0	1	1		50.00%	0	2	RefGen V2	χ2 p-value for B73 x Mo17: '' χ2 p-value for Mo17 x B73: '1' Biased in favor of strain: ''
GRMZM2G080191	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		5	2	0	6	71.43%	100.00%	7	6	RefGen V2	χ2 p-value for B73 x Mo17: '.789277' χ2 p-value for Mo17 x B73: '.0832645' Biased in favor of strain: ''
GRMZM2G080183	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.00164 x 10^-2	23	4	3	19	85.19%	86.36%	27	22	RefGen V2	χ2 p-value for B73 x Mo17: '.0412286' χ2 p-value for Mo17 x B73: '.0500164' Biased in favor of strain: ''
GRMZM2G080183	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	4.1236 x 10^-3	373	264	351	279	58.56%	44.29%	637	630	RefGen V2	χ2 p-value for B73 x Mo17: '.0000157' χ2 p-value for Mo17 x B73: '.0041236' Biased in favor of strain: 'B73'
GRMZM2G080176	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.854 x 10^-4	117	53	88	46	68.82%	34.33%	170	134	RefGen V2	χ2 p-value for B73 x Mo17: '9.17e-07' χ2 p-value for Mo17 x B73: '.0002854' Biased in favor of strain: 'B73'
GRMZM2G080176	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	1.468938 x 10^-1	84	31	87	88	73.04%	50.29%	115	175	RefGen V2	χ2 p-value for B73 x Mo17: '.1468938' χ2 p-value for Mo17 x B73: '4.29e-06' Biased in favor of strain: ''
GRMZM2G080174	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.292771 x 10^-1	249	116	117	209	68.22%	64.11%	365	326	RefGen V2	χ2 p-value for B73 x Mo17: '.5292771' χ2 p-value for Mo17 x B73: '.3275422' Biased in favor of strain: ''
GRMZM2G080174	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	7.794775 x 10^-1	498	369	309	316	57.44%	50.56%	867	625	RefGen V2	χ2 p-value for B73 x Mo17: '.0000118' χ2 p-value for Mo17 x B73: '.7794775' Biased in favor of strain: ''
GRMZM2G080156	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	5.485063 x 10^-1	15	8	14	11	65.22%	44.00%	23	25	RefGen V2	χ2 p-value for B73 x Mo17: '.1443998' χ2 p-value for Mo17 x B73: '.5485063' Biased in favor of strain: ''
GRMZM2G080156	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.173104 x 10^-1	12	1	8	10	92.31%	55.56%	13	18	RefGen V2	χ2 p-value for B73 x Mo17: '.0498614' χ2 p-value for Mo17 x B73: '.3173104' Biased in favor of strain: ''
GRMZM2G080120	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	2.04 x 10^-5	102	18	53	39	85.00%	42.39%	120	92	RefGen V2	χ2 p-value for B73 x Mo17: '.0000204' χ2 p-value for Mo17 x B73: '7.84e-07' Biased in favor of strain: 'B73'
GRMZM2G080120	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	not imprinted	3.17 x 10^-19	270	71	208	61	79.18%	22.68%	341	269	RefGen V2	χ2 p-value for B73 x Mo17: '4.45e-27' χ2 p-value for Mo17 x B73: '3.17e-19' Biased in favor of strain: 'B73'
GRMZM2G080116	embryo	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		0	1	0	0	0.00%		1	0	RefGen V2	χ2 p-value for B73 x Mo17: '.3173105' χ2 p-value for Mo17 x B73: '' Biased in favor of strain: ''
GRMZM2G080116	endosperm	Waters et al. 2011	Z. mays B73	Z. mays Mo17	14 DAP	N/A	N/A	no data		8	5	0	9	61.54%	100.00%	13	9	RefGen V2	χ2 p-value for B73 x Mo17: '.694873' χ2 p-value for Mo17 x B73: '.0338949' Biased in favor of strain: ''

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