| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G27495 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G27495 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G27490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '22.9779' Avg. expression score in LCM sample: '10.994' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '33.0014' Avg. expression score in LCM sample: '10.994' Tissue used: 'full endosperm' |
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| AT5G27490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '42.8291' Avg. embryo expression (LCM): '17.7327' |
||||||
| AT5G27490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G27490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G27490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G27470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 1 | 5 | 1 | 90.91% | 16.67% | 11 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.180447' Avg. expression score for this sample: '37.4548' Avg. expression score in LCM sample: '33.5994' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G27470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.47307 x 10-1 | 35 | 0 | 34 | 8 | 100.00% | 19.05% | 35 | 42 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.180447' Avg. expression score for this sample: '52.2748' Avg. expression score in LCM sample: '33.5994' Tissue used: 'full endosperm' |
|||||
| AT5G27470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.62554 x 10-1 | 11 | 5 | 4 | 2 | 68.75% | 33.33% | 16 | 6 | TAIR8 |
Avg. embryo expression (dissected): '93.6618' Avg. embryo expression (LCM): '123.928' |
||||
| AT5G27470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.7698 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.96 x 10-4 | 14 | 38 | 26.92% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.0 x 10-8 | 49 | 1 | 98.00% | 50 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.88812 x 10-1 | 34 | 20 | 17 | 45 | 62.96% | 72.58% | 54 | 62 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001403' Avg. expression score for this sample: '348.254' Avg. expression score in LCM sample: '120.596' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.71 x 10-4 | 84 | 27 | 20 | 124 | 75.68% | 86.11% | 111 | 144 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001403' Avg. expression score for this sample: '522.714' Avg. expression score in LCM sample: '120.596' Tissue used: 'full endosperm' |
|||||
| AT5G27460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.04107 x 10-1 | 25 | 29 | 12 | 6 | 46.30% | 33.33% | 54 | 18 | TAIR8 |
Avg. embryo expression (dissected): '397.291' Avg. embryo expression (LCM): '259.711' |
||||
| AT5G27460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.19009 x 10-1 | 27 | 12 | 69.23% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.34794 x 10-1 | 251 | 83 | 75.15% | 334 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.1383 x 10-2 | 236 | 40 | 85.51% | 276 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27450 | MK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '25.9338' Avg. expression score in LCM sample: '34.3196' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27450 | MK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '35.2846' Avg. expression score in LCM sample: '34.3196' Tissue used: 'full endosperm' |
||||||
| AT5G27450 | MK | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '37.0217' Avg. embryo expression (LCM): '42.2596' |
|||||
| AT5G27450 | MK | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27450 | MK | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27450 | MK | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.273343' Avg. expression score for this sample: '10.4189' Avg. expression score in LCM sample: '16.1383' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G27440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.7683 x 10-2 | 8 | 0 | 1 | 9 | 100.00% | 90.00% | 8 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.273343' Avg. expression score for this sample: '32.9732' Avg. expression score in LCM sample: '16.1383' Tissue used: 'full endosperm' |
|||||
| AT5G27440 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 3 | 0 | 0 | 57.14% | 7 | 0 | TAIR8 |
Avg. embryo expression (dissected): '20.5624' Avg. embryo expression (LCM): '44.4197' |
|||||
| AT5G27440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.15511 x 10-1 | 23 | 1 | 95.83% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27440 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.07284 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.3797 x 10-2 | 40 | 17 | 10 | 53 | 70.18% | 84.13% | 57 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005226' Avg. expression score for this sample: '114.426' Avg. expression score in LCM sample: '101.548' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.8285 x 10-2 | 32 | 20 | 18 | 97 | 61.54% | 84.35% | 52 | 115 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005226' Avg. expression score for this sample: '100.314' Avg. expression score in LCM sample: '101.548' Tissue used: 'full endosperm' |
|||||
| AT5G27430 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.04379 x 10-1 | 29 | 46 | 13 | 16 | 38.67% | 55.17% | 75 | 29 | TAIR8 |
Avg. embryo expression (dissected): '162.501' Avg. embryo expression (LCM): '121.781' |
||||
| AT5G27430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.6902 x 10-2 | 18 | 1 | 94.74% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.43064 x 10-1 | 148 | 56 | 72.55% | 204 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27430 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.98467 x 10-1 | 101 | 27 | 78.91% | 128 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27420 | CNI1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.36285 x 10-1 | 11 | 10 | 8 | 8 | 52.38% | 50.00% | 21 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.660433' Avg. expression score for this sample: '11.5955' Avg. expression score in LCM sample: '10.8618' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27420 | CNI1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.51385 x 10-1 | 3 | 9 | 11 | 42 | 25.00% | 79.25% | 12 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.660433' Avg. expression score for this sample: '11.3818' Avg. expression score in LCM sample: '10.8618' Tissue used: 'full endosperm' |
||||
| AT5G27420 | CNI1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.80195 x 10-1 | 38 | 35 | 7 | 7 | 52.05% | 50.00% | 73 | 14 | TAIR8 |
Avg. embryo expression (dissected): '41.4656' Avg. embryo expression (LCM): '21.9273' |
|||
| AT5G27420 | CNI1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.1 x 10-4 | 24 | 1 | 96.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G27420 | CNI1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.4115 x 10-2 | 13 | 2 | 86.67% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G27420 | CNI1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.04 x 10-4 | 23 | 0 | 100.00% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G27410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.14234 x 10-1 | 24 | 4 | 4 | 10 | 85.71% | 71.43% | 28 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002375' Avg. expression score for this sample: '84.6466' Avg. expression score in LCM sample: '37.2739' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.079 x 10-3 | 59 | 17 | 15 | 68 | 77.63% | 81.93% | 76 | 83 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002375' Avg. expression score for this sample: '107.819' Avg. expression score in LCM sample: '37.2739' Tissue used: 'full endosperm' |
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| AT5G27410 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 16 | 9 | 8 | 1 | 64.00% | 11.11% | 25 | 9 | TAIR8 |
Avg. embryo expression (dissected): '105.545' Avg. embryo expression (LCM): '43.6536' |
||||
| AT5G27410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.07147 x 10-1 | 17 | 1 | 94.44% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.62521 x 10-1 | 58 | 13 | 81.69% | 71 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27410 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.163 x 10-3 | 114 | 10 | 91.94% | 124 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.39345 x 10-1 | 40 | 18 | 7 | 18 | 68.97% | 72.00% | 58 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.462383' Avg. expression score for this sample: '54.1103' Avg. expression score in LCM sample: '14.1982' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.9877 x 10-2 | 18 | 12 | 17 | 13 | 60.00% | 43.33% | 30 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.462383' Avg. expression score for this sample: '53.6526' Avg. expression score in LCM sample: '14.1982' Tissue used: 'full endosperm' |
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| AT5G27400 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.20857 x 10-1 | 37 | 58 | 15 | 11 | 38.95% | 42.31% | 95 | 26 | TAIR8 |
Avg. embryo expression (dissected): '128.455' Avg. embryo expression (LCM): '85.8379' |
||||
| AT5G27400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.7355 x 10-1 | 2 | 3 | 40.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.33365 x 10-1 | 16 | 13 | 55.17% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27400 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.465 x 10-3 | 33 | 5 | 86.84% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27395 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '14.503' Avg. expression score in LCM sample: '10.3179' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27395 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 0 | 4 | 4 | 100.00% | 50.00% | 6 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '25.6546' Avg. expression score in LCM sample: '10.3179' Tissue used: 'full endosperm' |
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| AT5G27395 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 3 | 0 | 0 | 0 | 100.00% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '35.0097' Avg. embryo expression (LCM): '44.9723' |
|||||
| AT5G27395 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.94118 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27395 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.01135 x 10-1 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27395 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.55795 x 10-1 | 18 | 1 | 94.74% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 2 | 1 | 1 | 66.67% | 50.00% | 6 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.105961' Avg. expression score for this sample: '4.23959' Avg. expression score in LCM sample: '1.4257' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.12834 x 10-1 | 4 | 3 | 10 | 3 | 57.14% | 23.08% | 7 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.105961' Avg. expression score for this sample: '5.49936' Avg. expression score in LCM sample: '1.4257' Tissue used: 'full endosperm' |
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| AT5G27390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 7 | 4 | 4 | 0 | 63.64% | 0.00% | 11 | 4 | TAIR8 |
Avg. embryo expression (dissected): '8.66212' Avg. embryo expression (LCM): '10.9385' |
||||
| AT5G27390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.09195 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27380 | GSH2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.44699 x 10-1 | 64 | 8 | 21 | 21 | 88.89% | 50.00% | 72 | 42 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.024444' Avg. expression score for this sample: '82.5369' Avg. expression score in LCM sample: '34.8488' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27380 | GSH2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.3028 x 10-2 | 70 | 19 | 26 | 72 | 78.65% | 73.47% | 89 | 98 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.024444' Avg. expression score for this sample: '103.344' Avg. expression score in LCM sample: '34.8488' Tissue used: 'full endosperm' |
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| AT5G27380 | GSH2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.53007 x 10-1 | 27 | 16 | 5 | 8 | 62.79% | 61.54% | 43 | 13 | TAIR8 |
Avg. embryo expression (dissected): '68.273' Avg. embryo expression (LCM): '51.6158' |
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| AT5G27380 | GSH2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.8413 x 10-1 | 18 | 8 | 69.23% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G27380 | GSH2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.5725 x 10-2 | 66 | 12 | 84.62% | 78 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G27380 | GSH2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.5 x 10-23 | 340 | 3 | 99.13% | 343 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G27370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.445938' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G27370 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 1 | 0 | 0.00% | 0.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '1.79958' Avg. embryo expression (LCM): '0' |
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| AT5G27370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G27370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G27370 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G27360 | SFP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.8084 x 10-1 | 11 | 4 | 2 | 9 | 73.33% | 81.82% | 15 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.065904' Avg. expression score for this sample: '11.3181' Avg. expression score in LCM sample: '3.57159' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27360 | SFP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.1132 x 10-1 | 35 | 9 | 8 | 29 | 79.55% | 78.38% | 44 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.065904' Avg. expression score for this sample: '32.4701' Avg. expression score in LCM sample: '3.57159' Tissue used: 'full endosperm' |
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| AT5G27360 | SFP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.20978 x 10-1 | 19 | 16 | 2 | 6 | 54.29% | 75.00% | 35 | 8 | TAIR8 |
Avg. embryo expression (dissected): '35.2312' Avg. embryo expression (LCM): '22.1282' |
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| AT5G27360 | SFP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.78573 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G27360 | SFP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.3015 x 10-2 | 19 | 0 | 100.00% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G27360 | SFP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.4 x 10-6 | 96 | 2 | 97.96% | 98 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G27350 | SFP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '8.33045' Avg. expression score in LCM sample: '2.26348' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27350 | SFP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 1 | 100.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '43.7719' Avg. expression score in LCM sample: '2.26348' Tissue used: 'full endosperm' |
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| AT5G27350 | SFP1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.17058' Avg. embryo expression (LCM): '.640487' |
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| AT5G27350 | SFP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27350 | SFP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27350 | SFP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G27340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G27340 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT5G27340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G27340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G27340 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G27330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.0682 x 10-2 | 883 | 672 | 444 | 1103 | 56.78% | 71.30% | 1555 | 1547 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.006848' Avg. expression score for this sample: '1055.28' Avg. expression score in LCM sample: '739.731' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G27330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.0461 x 10-2 | 1144 | 662 | 1175 | 2275 | 63.34% | 65.94% | 1806 | 3450 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.006848' Avg. expression score for this sample: '907.274' Avg. expression score in LCM sample: '739.731' Tissue used: 'full endosperm' |