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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G27810 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 0 0 0 4 100.00% 0 4 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.1'
Avg. expression score for this sample: '4.69383'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G27810 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G27810 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27810 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27807 MIR164C endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27807 MIR164C endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G27807 MIR164C endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G27807 MIR164C embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G27807 MIR164C endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27807 MIR164C endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27800 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27800 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G27800 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G27800 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G27800 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27800 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27790 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27790 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G27790 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '1.84244'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G27790 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G27790 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27790 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27780 SAUR75 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27780 SAUR75 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G27780 SAUR75 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G27780 SAUR75 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G27780 SAUR75 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27780 SAUR75 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27770 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 7.5622 x 10-2 45 9 83.33% 54 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27770 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.57069 x 10-1 14 8 5 21 63.64% 80.77% 22 26 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.873374'
Avg. expression score for this sample: '731.733'
Avg. expression score in LCM sample: '240.399'
Tissue used: 'pure endosperm, no chalazal'
AT5G27770 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 11 6 9 16 64.71% 64.00% 17 25 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.873374'
Avg. expression score for this sample: '715.892'
Avg. expression score in LCM sample: '240.399'
Tissue used: 'full endosperm'
AT5G27770 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 9.03498 x 10-1 60 65 5 6 48.00% 54.55% 125 11 TAIR8 Avg. embryo expression (dissected): '1853.19'
Avg. embryo expression (LCM): '2472.08'
AT5G27770 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 14 6 70.00% 20 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27770 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.94429 x 10-1 50 13 79.37% 63 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27760 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27760 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '70.9015'
Avg. expression score in LCM sample: '59.1003'
Tissue used: 'pure endosperm, no chalazal'
AT5G27760 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '67.1779'
Avg. expression score in LCM sample: '59.1003'
Tissue used: 'full endosperm'
AT5G27760 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '80.7801'
Avg. embryo expression (LCM): '125.146'
AT5G27760 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27760 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27750 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 9.12 x 10-4 259 41 86.33% 300 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27750 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 15 10 10 21 60.00% 67.74% 25 31 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.0157'
Avg. expression score for this sample: '27.6273'
Avg. expression score in LCM sample: '17.8433'
Tissue used: 'pure endosperm, no chalazal'
AT5G27750 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.858 x 10-3 66 25 29 129 72.53% 81.65% 91 158 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.0157'
Avg. expression score for this sample: '76.885'
Avg. expression score in LCM sample: '17.8433'
Tissue used: 'full endosperm'
AT5G27750 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.89073 x 10-1 12 10 2 3 54.55% 60.00% 22 5 TAIR8 Avg. embryo expression (dissected): '23.0283'
Avg. embryo expression (LCM): '19.8174'
AT5G27750 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.505 x 10-2 38 3 92.68% 41 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27750 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.7 x 10-5 293 38 88.52% 331 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27740 EMB2775 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.30342 x 10-1 77 24 76.24% 101 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27740 EMB2775 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.71671 x 10-1 33 18 23 30 64.71% 56.60% 51 53 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.163094'
Avg. expression score for this sample: '82.8048'
Avg. expression score in LCM sample: '43.0061'
Tissue used: 'pure endosperm, no chalazal'
AT5G27740 EMB2775 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.7671 x 10-2 106 44 54 171 70.67% 76.00% 150 225 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.163094'
Avg. expression score for this sample: '154.578'
Avg. expression score in LCM sample: '43.0061'
Tissue used: 'full endosperm'
AT5G27740 EMB2775 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.34929 x 10-1 35 56 5 10 38.46% 66.67% 91 15 TAIR8 Avg. embryo expression (dissected): '133.619'
Avg. embryo expression (LCM): '234.858'
AT5G27740 EMB2775 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.26945 x 10-1 26 7 78.79% 33 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27740 EMB2775 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.10833 x 10-1 52 15 77.61% 67 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27730 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.6 x 10-4 60 6 90.91% 66 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27730 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 25 28 16 61 47.17% 79.22% 53 77 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.637873'
Avg. expression score for this sample: '38.2014'
Avg. expression score in LCM sample: '5.23246'
Tissue used: 'pure endosperm, no chalazal'
AT5G27730 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.17783 x 10-1 50 26 10 43 65.79% 81.13% 76 53 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.637873'
Avg. expression score for this sample: '48.5469'
Avg. expression score in LCM sample: '5.23246'
Tissue used: 'full endosperm'
AT5G27730 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.65576 x 10-1 43 95 14 43 31.16% 75.44% 138 57 TAIR8 Avg. embryo expression (dissected): '79.7938'
Avg. embryo expression (LCM): '41.707'
AT5G27730 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.46761 x 10-1 15 4 78.95% 19 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27730 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.1 x 10-6 54 2 96.43% 56 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27720 emb1644 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 6.43 x 10-4 242 67 78.32% 309 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27720 emb1644 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 115 45 47 71 71.88% 60.17% 160 118 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.427592'
Avg. expression score for this sample: '563.983'
Avg. expression score in LCM sample: '180.476'
Tissue used: 'pure endosperm, no chalazal'
AT5G27720 emb1644 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.8252 x 10-1 246 106 133 284 69.89% 68.11% 352 417 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.427592'
Avg. expression score for this sample: '373.996'
Avg. expression score in LCM sample: '180.476'
Tissue used: 'full endosperm'
AT5G27720 emb1644 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.36014 x 10-1 128 100 19 15 56.14% 44.12% 228 34 TAIR8 Avg. embryo expression (dissected): '622.95'
Avg. embryo expression (LCM): '504.29'
AT5G27720 emb1644 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 7.5865 x 10-2 61 17 78.21% 78 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27720 emb1644 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.558 x 10-3 305 96 76.06% 401 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27715 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27715 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G27715 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G27715 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G27715 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27715 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27710 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '21.4263'
Avg. expression score in LCM sample: '14.8596'
Tissue used: 'pure endosperm, no chalazal'
AT5G27710 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '38.5792'
Avg. expression score in LCM sample: '14.8596'
Tissue used: 'full endosperm'
AT5G27710 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '23.065'
Avg. embryo expression (LCM): '26.2349'
AT5G27710 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27710 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27710 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27700 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.65709 x 10-1 59 40 33 99 59.60% 75.00% 99 132 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.004084'
Avg. expression score for this sample: '133.002'
Avg. expression score in LCM sample: '51.7073'
Tissue used: 'pure endosperm, no chalazal'
AT5G27700 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.411 x 10-3 128 70 65 288 64.65% 81.59% 198 353 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.004084'
Avg. expression score for this sample: '175.663'
Avg. expression score in LCM sample: '51.7073'
Tissue used: 'full endosperm'
AT5G27700 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.7 x 10-5 103 234 19 31 30.56% 62.00% 337 50 TAIR8 Avg. embryo expression (dissected): '279.526'
Avg. embryo expression (LCM): '490.136'
AT5G27700 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.8388 x 10-2 81 15 84.38% 96 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27700 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.9463 x 10-2 189 44 81.12% 233 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27700 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 112 40 73.68% 152 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27690 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '1.21993'
Tissue used: 'pure endosperm, no chalazal'
AT5G27690 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 0 0 0 3 100.00% 0 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.05577'
Avg. expression score in LCM sample: '1.21993'
Tissue used: 'full endosperm'
AT5G27690 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0 0 0.00% 1 0 TAIR8 Avg. embryo expression (dissected): '.718619'
Avg. embryo expression (LCM): '0'
AT5G27690 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27690 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27690 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27680 RECQSIM endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.05483 x 10-1 11 3 1 9 78.57% 90.00% 14 10 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '8.13169'
Avg. expression score in LCM sample: '4.08602'
Tissue used: 'pure endosperm, no chalazal'
AT5G27680 RECQSIM endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.57865 x 10-1 27 13 21 31 67.50% 59.62% 40 52 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '15.3821'
Avg. expression score in LCM sample: '4.08602'
Tissue used: 'full endosperm'
AT5G27680 RECQSIM embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.45653 x 10-1 21 13 3 1 61.76% 25.00% 34 4 TAIR8 Avg. embryo expression (dissected): '15.5633'
Avg. embryo expression (LCM): '26.7247'
AT5G27680 RECQSIM endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.33325 x 10-1 7 1 87.50% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27680 RECQSIM endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.61301 x 10-1 27 18 60.00% 45 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27680 RECQSIM endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.6983 x 10-2 29 4 87.88% 33 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27670 HTA7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.7746 x 10-2 280 182 85 389 60.61% 82.07% 462 474 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '3.2e-06'
Avg. expression score for this sample: '461.413'
Avg. expression score in LCM sample: '341.33'
Tissue used: 'pure endosperm, no chalazal'
AT5G27670 HTA7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.3 x 10-5 395 147 163 513 72.88% 75.89% 542 676 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '3.2e-06'
Avg. expression score for this sample: '493.509'
Avg. expression score in LCM sample: '341.33'
Tissue used: 'full endosperm'
AT5G27670 HTA7 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.86723 x 10-1 332 400 88 176 45.36% 66.67% 732 264 TAIR8 Avg. embryo expression (dissected): '772.35'
Avg. embryo expression (LCM): '1128.36'
AT5G27670 HTA7 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.425 x 10-3 179 39 82.11% 218 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27670 HTA7 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 7.7058 x 10-2 210 58 78.36% 268 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G27670 HTA7 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.7 x 10-5 370 80 82.22% 450 TAIR8 Mutant effect: 'N/A (not a MEG)'