Displaying data sets 2101 - 2200 of 169464 in total
Download CSV  
Show/hide fields
All
None
Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G64620 C/VIF2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.82283 x 10-1 26 4 3 2 86.67% 40.00% 30 5 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.018616'
Avg. expression score for this sample: '23.0741'
Avg. expression score in LCM sample: '6.59936'
Tissue used: 'pure endosperm, no chalazal'
AT5G64620 C/VIF2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.2731 x 10-2 160 22 50 53 87.91% 51.46% 182 103 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.018616'
Avg. expression score for this sample: '110.493'
Avg. expression score in LCM sample: '6.59936'
Tissue used: 'full endosperm'
AT5G64620 C/VIF2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.4982 x 10-2 129 72 17 14 64.18% 45.16% 201 31 TAIR8 Avg. embryo expression (dissected): '219.806'
Avg. embryo expression (LCM): '188.002'
AT5G64620 C/VIF2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.086 x 10-3 27 24 52.94% 51 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64620 C/VIF2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 7.4161 x 10-1 11 2 84.62% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64620 C/VIF2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.6144 x 10-2 16 0 100.00% 16 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64610 HAM1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 3 3 2 5 50.00% 71.43% 6 7 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '485.911'
Avg. expression score in LCM sample: '155.372'
Tissue used: 'pure endosperm, no chalazal'
AT5G64610 HAM1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 2 1 3 8 66.67% 72.73% 3 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '364.208'
Avg. expression score in LCM sample: '155.372'
Tissue used: 'full endosperm'
AT5G64610 HAM1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.37186 x 10-1 2 5 1 1 28.57% 50.00% 7 2 TAIR8 Avg. embryo expression (dissected): '761.235'
Avg. embryo expression (LCM): '579.691'
AT5G64610 HAM1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64610 HAM1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.37658 x 10-1 17 4 80.95% 21 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64610 HAM1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.50649 x 10-1 7 0 100.00% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64600 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.23077 x 10-1 2 0 1 5 100.00% 83.33% 2 6 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '9.67001'
Avg. expression score in LCM sample: '6.45238'
Tissue used: 'pure endosperm, no chalazal'
AT5G64600 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 6 5 2 6 54.55% 75.00% 11 8 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '16.7325'
Avg. expression score in LCM sample: '6.45238'
Tissue used: 'full endosperm'
AT5G64600 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.77713 x 10-1 2 8 1 3 20.00% 75.00% 10 4 TAIR8 Avg. embryo expression (dissected): '23.8559'
Avg. embryo expression (LCM): '18.5993'
AT5G64600 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.49722 x 10-1 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64600 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.07157 x 10-1 18 4 81.82% 22 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64600 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.2598 x 10-1 12 1 92.31% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64590 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.422213'
Avg. expression score in LCM sample: '2.38106'
Tissue used: 'pure endosperm, no chalazal'
AT5G64590 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '2.38106'
Tissue used: 'full endosperm'
AT5G64590 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G64590 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64590 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64590 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64580 EMB3144 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 6 2 4 3 75.00% 42.86% 8 7 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.697942'
Avg. expression score for this sample: '41.5013'
Avg. expression score in LCM sample: '22.0028'
Tissue used: 'pure endosperm, no chalazal'
AT5G64580 EMB3144 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.21253 x 10-1 8 5 11 19 61.54% 63.33% 13 30 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.697942'
Avg. expression score for this sample: '50.8723'
Avg. expression score in LCM sample: '22.0028'
Tissue used: 'full endosperm'
AT5G64580 EMB3144 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.59709 x 10-1 26 29 4 4 47.27% 50.00% 55 8 TAIR8 Avg. embryo expression (dissected): '163.526'
Avg. embryo expression (LCM): '174.991'
AT5G64580 EMB3144 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64580 EMB3144 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.7905 11 8 57.89% 19 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64580 EMB3144 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.5484 x 10-2 25 4 86.21% 29 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64572 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.85 x 10-3 16 27 5 2 37.21% 28.57% 43 7 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000378'
Avg. expression score for this sample: '79.4965'
Avg. expression score in LCM sample: '4.30649'
Tissue used: 'pure endosperm, no chalazal'
AT5G64572 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 9.2357 x 10-2 4 3 17 11 57.14% 39.29% 7 28 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000378'
Avg. expression score for this sample: '58.1672'
Avg. expression score in LCM sample: '4.30649'
Tissue used: 'full endosperm'
AT5G64572 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 196 184 77 63 51.58% 45.00% 380 140 TAIR8 Avg. embryo expression (dissected): '1307.72'
Avg. embryo expression (LCM): '1068.95'
AT5G64572 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.20663 x 10-1 5 2 71.43% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64572 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.59048 x 10-1 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64572 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.9 x 10-5 24 4 85.71% 28 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64570 XYL4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.742 x 10-3 27 36 11 7 42.86% 38.89% 63 18 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000105'
Avg. expression score for this sample: '116.246'
Avg. expression score in LCM sample: '.823083'
Tissue used: 'pure endosperm, no chalazal'
AT5G64570 XYL4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.4967 x 10-2 5 3 25 16 62.50% 39.02% 8 41 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000105'
Avg. expression score for this sample: '83.212'
Avg. expression score in LCM sample: '.823083'
Tissue used: 'full endosperm'
AT5G64570 XYL4 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.26063 x 10-1 325 319 75 111 50.47% 59.68% 644 186 TAIR8 Avg. embryo expression (dissected): '1941.54'
Avg. embryo expression (LCM): '2016.25'
AT5G64570 XYL4 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 3 5 37.50% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64570 XYL4 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.2469 x 10-2 7 1 87.50% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64570 XYL4 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 x 10-7 42 7 85.71% 49 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64560 MGT9 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 0 1 0 0 0.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.61927'
Avg. expression score for this sample: '650.968'
Avg. expression score in LCM sample: '258.948'
Tissue used: 'pure endosperm, no chalazal'
AT5G64560 MGT9 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.92075 x 10-1 3 1 3 0 75.00% 0.00% 4 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.61927'
Avg. expression score for this sample: '415.774'
Avg. expression score in LCM sample: '258.948'
Tissue used: 'full endosperm'
AT5G64560 MGT9 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 1 0 0.00% 0 1 TAIR8 Avg. embryo expression (dissected): '727.253'
Avg. embryo expression (LCM): '489.747'
AT5G64560 MGT9 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64560 MGT9 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 2 3 40.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64560 MGT9 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.81818 x 10-1 3 0 100.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64552 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.01726 x 10-1 1227 387 749 1148 76.02% 60.52% 1614 1897 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.111702'
Avg. expression score for this sample: '31475.8'
Avg. expression score in LCM sample: '12898.7'
Tissue used: 'pure endosperm, no chalazal'
AT5G64552 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.14403 x 10-1 599 175 300 476 77.39% 61.34% 774 776 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.111702'
Avg. expression score for this sample: '11847'
Avg. expression score in LCM sample: '12898.7'
Tissue used: 'full endosperm'
AT5G64552 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.14031 x 10-1 467 316 228 126 59.64% 35.59% 783 354 TAIR8 Avg. embryo expression (dissected): '23463.7'
Avg. embryo expression (LCM): '5716.31'
AT5G64552 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.0947 x 10-2 80 22 78.43% 102 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64552 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 9.0 x 10-22 273 24 91.92% 297 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64552 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 861 24 97.29% 885 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64550 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '2.9708'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G64550 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '5.11978'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G64550 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '4.27837'
Avg. embryo expression (LCM): '0'
AT5G64550 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64550 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64550 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64541 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G64541 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1.21992'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G64541 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G64541 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64541 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64541 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64540 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '3.27387'
Avg. expression score in LCM sample: '1.77845'
Tissue used: 'pure endosperm, no chalazal'
AT5G64540 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '3.86991'
Avg. expression score in LCM sample: '1.77845'
Tissue used: 'full endosperm'
AT5G64540 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '4.16623'
Avg. embryo expression (LCM): '.766073'
AT5G64540 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64540 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 2 2 50.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64540 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64530 XND1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.98381 x 10-1 3 2 6 0 60.00% 0.00% 5 6 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.244315'
Avg. expression score for this sample: '20.5616'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G64530 XND1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 6 1 4 2 85.71% 33.33% 7 6 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.244315'
Avg. expression score for this sample: '22.92'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G64530 XND1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 69 77 13 19 47.26% 59.38% 146 32 TAIR8 Avg. embryo expression (dissected): '281.202'
Avg. embryo expression (LCM): '405.077'
AT5G64530 XND1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64530 XND1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64530 XND1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 2 33.33% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64520 XRCC2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 0 0 1 0 0.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '18.8381'
Avg. expression score in LCM sample: '15.8737'
Tissue used: 'pure endosperm, no chalazal'
AT5G64520 XRCC2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 0 0 0 1 100.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '26.7173'
Avg. expression score in LCM sample: '15.8737'
Tissue used: 'full endosperm'
AT5G64520 XRCC2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 1 0 0 50.00% 2 0 TAIR8 Avg. embryo expression (dissected): '69.1426'
Avg. embryo expression (LCM): '45.2109'
AT5G64520 XRCC2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64520 XRCC2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64520 XRCC2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64510 TIN1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.82247 x 10-1 55 11 24 42 83.33% 63.64% 66 66 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.033681'
Avg. expression score for this sample: '1286.44'
Avg. expression score in LCM sample: '120.126'
Tissue used: 'pure endosperm, no chalazal'
AT5G64510 TIN1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.0894 x 10-2 90 35 31 100 72.00% 76.34% 125 131 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.033681'
Avg. expression score for this sample: '854.792'
Avg. expression score in LCM sample: '120.126'
Tissue used: 'full endosperm'
AT5G64510 TIN1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.43977 x 10-1 41 32 15 22 56.16% 59.46% 73 37 TAIR8 Avg. embryo expression (dissected): '1098.01'
Avg. embryo expression (LCM): '18.662'
AT5G64510 TIN1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.87567 x 10-1 26 4 86.67% 30 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64510 TIN1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.316 x 10-2 17 1 94.44% 18 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64510 TIN1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.6 x 10-7 72 2 97.30% 74 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64505 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G64505 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G64505 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G64505 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64505 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64505 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G64500 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.5116 x 10-2 14 6 2 30 70.00% 93.75% 20 32 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.01192'
Avg. expression score for this sample: '47.3243'
Avg. expression score in LCM sample: '50.3992'
Tissue used: 'pure endosperm, no chalazal'
AT5G64500 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.0925 36 14 15 61 72.00% 80.26% 50 76 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.01192'
Avg. expression score for this sample: '76.5225'
Avg. expression score in LCM sample: '50.3992'
Tissue used: 'full endosperm'
AT5G64500 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 5.99011 x 10-1 8 14 3 4 36.36% 57.14% 22 7 TAIR8 Avg. embryo expression (dissected): '48.2174'
Avg. embryo expression (LCM): '44.495'
AT5G64500 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 6.39609 x 10-1 5 2 71.43% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'