| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G38620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.1639 x 10-2 | 49 | 74 | 39.84% | 123 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38620 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0883 x 10-2 | 3 | 13 | 18.75% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.6 x 10-4 | 32 | 0 | 0 | 1 | 100.00% | 100.00% | 32 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.7e-20' Avg. expression score for this sample: '14.028' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.1 x 10-16 | 117 | 0 | 0 | 19 | 100.00% | 100.00% | 117 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.7e-20' Avg. expression score for this sample: '35.1039' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G38610 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 3 | 2 | 2 | 50.00% | 50.00% | 6 | 4 | TAIR8 |
Avg. embryo expression (dissected): '6.1454' Avg. embryo expression (LCM): '0' |
||||
| AT5G38610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38610 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 66 | 0 | 100.00% | 66 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.675 x 10-3 | 232 | 217 | 180 | 376 | 51.67% | 67.63% | 449 | 556 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.915037' Avg. expression score for this sample: '218.999' Avg. expression score in LCM sample: '43.447' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G38600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.78 x 10-4 | 299 | 100 | 93 | 285 | 74.94% | 75.40% | 399 | 378 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.915037' Avg. expression score for this sample: '208.468' Avg. expression score in LCM sample: '43.447' Tissue used: 'full endosperm' |
|||||
| AT5G38600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.50825 x 10-1 | 474 | 537 | 128 | 118 | 46.88% | 47.97% | 1011 | 246 | TAIR8 |
Avg. embryo expression (dissected): '464.373' Avg. embryo expression (LCM): '238.801' |
||||
| AT5G38600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.1 x 10-8 | 106 | 12 | 89.83% | 118 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.37402 x 10-1 | 338 | 141 | 70.56% | 479 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.97 x 10-4 | 351 | 115 | 75.32% | 466 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.18591 x 10-1 | 11 | 75 | 5 | 132 | 12.79% | 96.35% | 86 | 137 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.035207' Avg. expression score for this sample: '177.568' Avg. expression score in LCM sample: '50.2375' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.475 x 10-3 | 22 | 80 | 10 | 281 | 21.57% | 96.56% | 102 | 291 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.035207' Avg. expression score for this sample: '164.672' Avg. expression score in LCM sample: '50.2375' Tissue used: 'full endosperm' |
|||||
| AT5G38590 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.9 x 10-9 | 7 | 141 | 0 | 27 | 4.73% | 100.00% | 148 | 27 | TAIR8 |
Avg. embryo expression (dissected): '226.875' Avg. embryo expression (LCM): '200.548' |
||||
| AT5G38590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.2 x 10-5 | 33 | 0 | 100.00% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.4 x 10-11 | 247 | 24 | 91.14% | 271 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38590 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.1896 x 10-2 | 40 | 30 | 57.14% | 70 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.5671' Avg. expression score for this sample: '.50876' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G38580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 3 | 0 | 2 | 0.00% | 100.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.5671' Avg. expression score for this sample: '1.02219' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT5G38580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 2 | 0 | 1 | 0.00% | 100.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '1.15207' Avg. embryo expression (LCM): '0' |
||||
| AT5G38580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.2381 x 10-1 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G38570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.159127' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT5G38570 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT5G38570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38570 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38565 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 4 | 1 | 2 | 71.43% | 66.67% | 14 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.645957' Avg. expression score for this sample: '10.8768' Avg. expression score in LCM sample: '5.6293' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38565 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.68054 x 10-1 | 9 | 4 | 3 | 12 | 69.23% | 80.00% | 13 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.645957' Avg. expression score for this sample: '14.1354' Avg. expression score in LCM sample: '5.6293' Tissue used: 'full endosperm' |
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| AT5G38565 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.4592' Avg. embryo expression (LCM): '.96701' |
||||||
| AT5G38565 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.9457 x 10-2 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38565 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.5867 x 10-2 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38565 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2614 x 10-2 | 19 | 0 | 100.00% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38560 | PERK8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.22 x 10-4 | 1273 | 374 | 574 | 1057 | 77.29% | 64.81% | 1647 | 1631 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-13' Avg. expression score for this sample: '1485.23' Avg. expression score in LCM sample: '327.558' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38560 | PERK8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.4 x 10-12 | 1350 | 357 | 281 | 602 | 79.09% | 68.18% | 1707 | 883 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-13' Avg. expression score for this sample: '1586.81' Avg. expression score in LCM sample: '327.558' Tissue used: 'full endosperm' |
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| AT5G38560 | PERK8 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.15336 x 10-1 | 1399 | 998 | 1208 | 819 | 58.36% | 40.40% | 2397 | 2027 | TAIR8 |
Avg. embryo expression (dissected): '3525.48' Avg. embryo expression (LCM): '458.966' |
|||
| AT5G38560 | PERK8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.6604 x 10-1 | 273 | 92 | 74.79% | 365 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38560 | PERK8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-11 | 657 | 127 | 83.80% | 784 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38560 | PERK8 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1754 | 96 | 94.81% | 1850 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G38550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.787405' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G38550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.140388' Avg. embryo expression (LCM): '0' |
||||||
| AT5G38550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.121919' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G38540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G38540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38530 | TSBtype2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.45869 x 10-1 | 37 | 21 | 14 | 21 | 63.79% | 60.00% | 58 | 35 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '15.197' Avg. expression score in LCM sample: '.837781' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38530 | TSBtype2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.51939 x 10-1 | 81 | 43 | 41 | 95 | 65.32% | 69.85% | 124 | 136 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '32.0922' Avg. expression score in LCM sample: '.837781' Tissue used: 'full endosperm' |
||||
| AT5G38530 | TSBtype2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 59 | 58 | 21 | 21 | 50.43% | 50.00% | 117 | 42 | TAIR8 |
Avg. embryo expression (dissected): '47.0987' Avg. embryo expression (LCM): '41.6191' |
|||
| AT5G38530 | TSBtype2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.38338 x 10-1 | 32 | 25 | 56.14% | 57 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38530 | TSBtype2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.3275 x 10-2 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38530 | TSBtype2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.0496 x 10-2 | 19 | 3 | 86.36% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.9437 x 10-2 | 67 | 10 | 16 | 24 | 87.01% | 60.00% | 77 | 40 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.212456' Avg. expression score for this sample: '55.6612' Avg. expression score in LCM sample: '17.9315' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.39478 x 10-1 | 101 | 36 | 35 | 49 | 73.72% | 58.33% | 137 | 84 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.212456' Avg. expression score for this sample: '81.8545' Avg. expression score in LCM sample: '17.9315' Tissue used: 'full endosperm' |
|||||
| AT5G38520 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.6546 x 10-1 | 47 | 30 | 12 | 16 | 61.04% | 57.14% | 77 | 28 | TAIR8 |
Avg. embryo expression (dissected): '84.128' Avg. embryo expression (LCM): '53.6' |
||||
| AT5G38520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.21026 x 10-1 | 10 | 2 | 83.33% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38520 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.94848 x 10-1 | 5 | 3 | 62.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '12.3273' Avg. expression score in LCM sample: '13.1105' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '11.1728' Avg. expression score in LCM sample: '13.1105' Tissue used: 'full endosperm' |
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| AT5G38510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '24.501' Avg. embryo expression (LCM): '22.4171' |
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| AT5G38510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.439501' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G38500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT5G38500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.175627' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.495693' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G38490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '3.31931' Avg. embryo expression (LCM): '0' |
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| AT5G38490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G38490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G38480 | GRF3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.54459 x 10-1 | 8 | 10 | 5 | 11 | 44.44% | 68.75% | 18 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000059' Avg. expression score for this sample: '305.306' Avg. expression score in LCM sample: '274.292' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38480 | GRF3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.0 x 10-7 | 34 | 10 | 19 | 154 | 77.27% | 89.02% | 44 | 173 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000059' Avg. expression score for this sample: '546.072' Avg. expression score in LCM sample: '274.292' Tissue used: 'full endosperm' |
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| AT5G38480 | GRF3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.32269 x 10-1 | 14 | 36 | 2 | 6 | 28.00% | 75.00% | 50 | 8 | TAIR8 |
Avg. embryo expression (dissected): '590.556' Avg. embryo expression (LCM): '1285.71' |
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| AT5G38480 | GRF3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.74314 x 10-1 | 25 | 2 | 92.59% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38480 | GRF3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.91046 x 10-1 | 116 | 29 | 80.00% | 145 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38480 | GRF3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.55988 x 10-1 | 74 | 21 | 77.89% | 95 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38470 | RAD23D | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.22147 x 10-1 | 920 | 331 | 447 | 686 | 73.54% | 60.55% | 1251 | 1133 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-12' Avg. expression score for this sample: '1080.27' Avg. expression score in LCM sample: '574.821' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38470 | RAD23D | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.7 x 10-19 | 1566 | 246 | 653 | 1271 | 86.42% | 66.06% | 1812 | 1924 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-12' Avg. expression score for this sample: '1125.88' Avg. expression score in LCM sample: '574.821' Tissue used: 'full endosperm' |
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| AT5G38470 | RAD23D | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.8 x 10-6 | 861 | 547 | 164 | 120 | 61.15% | 42.25% | 1408 | 284 | TAIR8 |
Avg. embryo expression (dissected): '1100.42' Avg. embryo expression (LCM): '762.042' |
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| AT5G38470 | RAD23D | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.5342 x 10-2 | 350 | 163 | 68.23% | 513 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38470 | RAD23D | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.0 x 10-30 | 2028 | 1289 | 61.14% | 3317 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38470 | RAD23D | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 2628 | 350 | 88.25% | 2978 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G38460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.26416 x 10-1 | 21 | 15 | 33 | 47 | 58.33% | 58.75% | 36 | 80 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.731494' Avg. expression score for this sample: '72.8393' Avg. expression score in LCM sample: '74.1363' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G38460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.7231 x 10-2 | 73 | 21 | 29 | 71 | 77.66% | 71.00% | 94 | 100 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.731494' Avg. expression score for this sample: '98.7934' Avg. expression score in LCM sample: '74.1363' Tissue used: 'full endosperm' |