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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G38780 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.576471'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G38780 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.76471 x 10-1 0 1 0 8 0.00% 100.00% 1 8 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.576471'
Avg. expression score for this sample: '1.96469'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G38780 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 1 0 0.00% 0 1 TAIR8 Avg. embryo expression (dissected): '1.46799'
Avg. embryo expression (LCM): '0'
AT5G38780 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38780 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.2 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38780 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38770 GDU7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G38770 GDU7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G38770 GDU7 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G38770 GDU7 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38770 GDU7 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38770 GDU7 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38760 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G38760 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G38760 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G38760 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38760 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38760 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38750 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1.27635'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G38750 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.893473'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G38750 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '4.70549'
Avg. embryo expression (LCM): '15.5098'
AT5G38750 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38750 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38750 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38740 AGL77 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G38740 AGL77 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.783415'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G38740 AGL77 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G38740 AGL77 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38740 AGL77 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38740 AGL77 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38730 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.00028 x 10-1 8 10 3 13 44.44% 81.25% 18 16 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.095216'
Avg. expression score for this sample: '17.7452'
Avg. expression score in LCM sample: '7.39305'
Tissue used: 'pure endosperm, no chalazal'
AT5G38730 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.8954 x 10-2 16 4 7 45 80.00% 86.54% 20 52 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.095216'
Avg. expression score for this sample: '39.3678'
Avg. expression score in LCM sample: '7.39305'
Tissue used: 'full endosperm'
AT5G38730 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.82745 x 10-1 20 25 1 1 44.44% 50.00% 45 2 TAIR8 Avg. embryo expression (dissected): '38.6101'
Avg. embryo expression (LCM): '21.7515'
AT5G38730 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.00297 x 10-1 8 0 100.00% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38730 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 81 25 76.42% 106 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38730 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.35265 x 10-1 59 11 84.29% 70 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38720 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 9 1 3 3 90.00% 50.00% 10 6 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.068838'
Avg. expression score for this sample: '58.7316'
Avg. expression score in LCM sample: '5.01199'
Tissue used: 'pure endosperm, no chalazal'
AT5G38720 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.18896 x 10-1 55 12 30 72 82.09% 70.59% 67 102 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.068838'
Avg. expression score for this sample: '140.332'
Avg. expression score in LCM sample: '5.01199'
Tissue used: 'full endosperm'
AT5G38720 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.22208 x 10-1 12 16 3 2 42.86% 40.00% 28 5 TAIR8 Avg. embryo expression (dissected): '111.422'
Avg. embryo expression (LCM): '155.237'
AT5G38720 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.40515 x 10-1 1 1 50.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38720 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.98755 x 10-1 98 36 73.13% 134 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38720 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.82412 x 10-1 121 27 81.76% 148 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38710 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.9731 x 10-2 96 47 76 65 67.13% 46.10% 143 141 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.028568'
Avg. expression score for this sample: '110.886'
Avg. expression score in LCM sample: '75.5326'
Tissue used: 'pure endosperm, no chalazal'
AT5G38710 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.53121 x 10-1 66 22 41 46 75.00% 52.87% 88 87 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.028568'
Avg. expression score for this sample: '60.1772'
Avg. expression score in LCM sample: '75.5326'
Tissue used: 'full endosperm'
AT5G38710 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.37986 x 10-1 7 3 4 4 70.00% 50.00% 10 8 TAIR8 Avg. embryo expression (dissected): '11.3813'
Avg. embryo expression (LCM): '2.90103'
AT5G38710 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 8.2618 x 10-2 18 5 78.26% 23 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38710 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.661 x 10-3 21 2 91.30% 23 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38710 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.53578 x 10-1 16 19 45.71% 35 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38700 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.85 x 10-4 1066 169 408 392 86.32% 49.00% 1235 800 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.268941'
Avg. expression score for this sample: '874.889'
Avg. expression score in LCM sample: '10.9499'
Tissue used: 'pure endosperm, no chalazal'
AT5G38700 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.7 x 10-9 298 75 463 345 79.89% 42.70% 373 808 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.268941'
Avg. expression score for this sample: '490.982'
Avg. expression score in LCM sample: '10.9499'
Tissue used: 'full endosperm'
AT5G38700 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 0.0419 43 12 22 20 78.18% 47.62% 55 42 TAIR8 Avg. embryo expression (dissected): '65.7962'
Avg. embryo expression (LCM): '4.68435'
AT5G38700 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.4 x 10-9 43 73 37.07% 116 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38700 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.1822 x 10-2 0 3 0.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38700 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.07 x 10-4 19 0 100.00% 19 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38690 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.40405 x 10-1 7 2 0 3 77.78% 100.00% 9 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '21.2475'
Avg. expression score in LCM sample: '5.98205'
Tissue used: 'pure endosperm, no chalazal'
AT5G38690 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.66128 x 10-1 2 1 9 12 66.67% 57.14% 3 21 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '32.3912'
Avg. expression score in LCM sample: '5.98205'
Tissue used: 'full endosperm'
AT5G38690 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.80172 x 10-1 3 6 1 1 33.33% 50.00% 9 2 TAIR8 Avg. embryo expression (dissected): '46.7597'
Avg. embryo expression (LCM): '68.1554'
AT5G38690 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38690 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.46845 x 10-1 5 1 83.33% 6 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38690 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 7.30507 x 10-1 7 5 58.33% 12 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38680 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1.21122'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G38680 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '2.25989'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G38680 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '5.48597'
Avg. embryo expression (LCM): '2.34845'
AT5G38680 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38680 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38680 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38670 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.293379'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G38670 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.828042'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G38670 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G38670 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38670 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38670 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38660 APE1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 3 5 1 6 37.50% 85.71% 8 7 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '42.9611'
Avg. expression score in LCM sample: '27.147'
Tissue used: 'pure endosperm, no chalazal'
AT5G38660 APE1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 8 4 8 16 66.67% 66.67% 12 24 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '63.8418'
Avg. expression score in LCM sample: '27.147'
Tissue used: 'full endosperm'
AT5G38660 APE1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 2 2 0 0 50.00% 4 0 TAIR8 Avg. embryo expression (dissected): '35.3927'
Avg. embryo expression (LCM): '45.2234'
AT5G38660 APE1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 5 2 71.43% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38660 APE1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.48734 x 10-1 8 1 88.89% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38660 APE1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.07479 x 10-1 6 1 85.71% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38650 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 128 30 58 51 81.01% 46.79% 158 109 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001697'
Avg. expression score for this sample: '108.791'
Avg. expression score in LCM sample: '76.7672'
Tissue used: 'pure endosperm, no chalazal'
AT5G38650 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.3 x 10-4 300 43 83 125 87.46% 60.10% 343 208 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001697'
Avg. expression score for this sample: '162.037'
Avg. expression score in LCM sample: '76.7672'
Tissue used: 'full endosperm'
AT5G38650 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.728 x 10-3 90 35 21 15 72.00% 41.67% 125 36 TAIR8 Avg. embryo expression (dissected): '107.282'
Avg. embryo expression (LCM): '110.39'
AT5G38650 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.61 x 10-4 40 36 52.63% 76 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38650 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.44 x 10-4 283 163 63.45% 446 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38650 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.3 x 10-21 514 37 93.28% 551 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38640 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.85248 x 10-1 56 16 27 50 77.78% 64.94% 72 77 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.00679'
Avg. expression score for this sample: '45.0294'
Avg. expression score in LCM sample: '66.7285'
Tissue used: 'pure endosperm, no chalazal'
AT5G38640 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.782 x 10-3 113 25 32 88 81.88% 73.33% 138 120 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.00679'
Avg. expression score for this sample: '46.2797'
Avg. expression score in LCM sample: '66.7285'
Tissue used: 'full endosperm'
AT5G38640 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 0.0515 84 49 19 21 63.16% 52.50% 133 40 TAIR8 Avg. embryo expression (dissected): '63.2326'
Avg. embryo expression (LCM): '71.6718'
AT5G38640 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.91558 x 10-1 33 13 71.74% 46 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38640 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.6979 x 10-2 398 176 69.34% 574 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38640 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.5 x 10-8 399 46 89.66% 445 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38630 CYB-1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 9.5983 x 10-2 321 63 128 148 83.59% 53.62% 384 276 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001842'
Avg. expression score for this sample: '210.103'
Avg. expression score in LCM sample: '137.058'
Tissue used: 'pure endosperm, no chalazal'
AT5G38630 CYB-1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.591 x 10-3 280 60 129 238 82.35% 64.85% 340 367 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001842'
Avg. expression score for this sample: '175.777'
Avg. expression score in LCM sample: '137.058'
Tissue used: 'full endosperm'
AT5G38630 CYB-1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.3 x 10-5 203 83 31 25 70.98% 44.64% 286 56 TAIR8 Avg. embryo expression (dissected): '190.222'
Avg. embryo expression (LCM): '98.0071'
AT5G38630 CYB-1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.85189 x 10-1 53 17 75.71% 70 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38630 CYB-1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.48206 x 10-1 523 182 74.18% 705 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38630 CYB-1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 916 63 93.56% 979 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G38620 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 1 0 1 0 100.00% 0.00% 1 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '1.23388'
Avg. expression score in LCM sample: '26.6179'
Tissue used: 'pure endosperm, no chalazal'
AT5G38620 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 1 0 0 3 100.00% 100.00% 1 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '1.46021'
Avg. expression score in LCM sample: '26.6179'
Tissue used: 'full endosperm'
AT5G38620 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.27676'
Avg. embryo expression (LCM): '2.39869'
AT5G38620 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'