Displaying data sets 18301 - 18400 of 169464 in total
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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G40600 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 3 3 0 2 50.00% 100.00% 6 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.780788'
Avg. expression score for this sample: '16.3698'
Avg. expression score in LCM sample: '4.82092'
Tissue used: 'pure endosperm, no chalazal'
AT5G40600 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 4 1 7 8 80.00% 53.33% 5 15 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.780788'
Avg. expression score for this sample: '18.6595'
Avg. expression score in LCM sample: '4.82092'
Tissue used: 'full endosperm'
AT5G40600 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 8 7 0 1 53.33% 100.00% 15 1 TAIR8 Avg. embryo expression (dissected): '25.3381'
Avg. embryo expression (LCM): '17.8583'
AT5G40600 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 6.30145 x 10-1 4 1 80.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40600 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.7165 x 10-2 10 0 100.00% 10 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40600 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.5669 x 10-2 9 0 100.00% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40595 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '3.63815'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G40595 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '7.8147'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G40595 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '36.9933'
Avg. embryo expression (LCM): '17.7704'
AT5G40595 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40595 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40595 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40590 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 0 0 0 1 100.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.267184'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G40590 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G40590 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G40590 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40590 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40590 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40580 PBB2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 27 11 12 23 71.05% 65.71% 38 35 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.213906'
Avg. expression score for this sample: '256.209'
Avg. expression score in LCM sample: '139.571'
Tissue used: 'pure endosperm, no chalazal'
AT5G40580 PBB2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.74425 x 10-1 40 16 33 95 71.43% 74.22% 56 128 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.213906'
Avg. expression score for this sample: '261.652'
Avg. expression score in LCM sample: '139.571'
Tissue used: 'full endosperm'
AT5G40580 PBB2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 5.95352 x 10-1 22 32 4 6 40.74% 60.00% 54 10 TAIR8 Avg. embryo expression (dissected): '261.005'
Avg. embryo expression (LCM): '210.017'
AT5G40580 PBB2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.22664 x 10-1 29 6 82.86% 35 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40580 PBB2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.75721 x 10-1 161 82 66.26% 243 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40580 PBB2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.9 x 10-6 192 24 88.89% 216 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40570 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 5.99129 x 10-1 112 57 46 73 66.27% 61.34% 169 119 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.130721'
Avg. expression score for this sample: '88.1215'
Avg. expression score in LCM sample: '32.8351'
Tissue used: 'pure endosperm, no chalazal'
AT5G40570 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.715 x 10-3 71 27 41 160 72.45% 79.60% 98 201 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.130721'
Avg. expression score for this sample: '67.1081'
Avg. expression score in LCM sample: '32.8351'
Tissue used: 'full endosperm'
AT5G40570 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.19562 x 10-1 39 90 19 44 30.23% 69.84% 129 63 TAIR8 Avg. embryo expression (dissected): '82.1216'
Avg. embryo expression (LCM): '72.6137'
AT5G40570 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 9.6 x 10-7 66 3 95.65% 69 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40570 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.7283 x 10-1 194 82 70.29% 276 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40570 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.3 x 10-18 431 38 91.90% 469 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40560 DEG13 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G40560 DEG13 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G40560 DEG13 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G40560 DEG13 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40560 DEG13 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40560 DEG13 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40550 SGF29b endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.28602 x 10-1 29 12 14 31 70.73% 68.89% 41 45 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.18764'
Avg. expression score for this sample: '47.1384'
Avg. expression score in LCM sample: '23.5461'
Tissue used: 'pure endosperm, no chalazal'
AT5G40550 SGF29b endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.96231 x 10-1 56 13 24 51 81.16% 68.00% 69 75 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.18764'
Avg. expression score for this sample: '72.5664'
Avg. expression score in LCM sample: '23.5461'
Tissue used: 'full endosperm'
AT5G40550 SGF29b embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.05249 x 10-1 20 25 6 5 44.44% 45.45% 45 11 TAIR8 Avg. embryo expression (dissected): '45.2843'
Avg. embryo expression (LCM): '34.4859'
AT5G40550 SGF29b endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 7.31885 x 10-1 9 2 81.82% 11 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40550 SGF29b endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 7.175 x 10-3 25 1 96.15% 26 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40550 SGF29b endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.9 x 10-5 38 0 100.00% 38 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40545 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G40545 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G40545 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G40545 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40545 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40545 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40540 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '5.77706'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G40540 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 4 3 2 8 57.14% 80.00% 7 10 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '23.398'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G40540 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 19 21 2 4 47.50% 66.67% 40 6 TAIR8 Avg. embryo expression (dissected): '59.2156'
Avg. embryo expression (LCM): '14.053'
AT5G40540 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.89891 x 10-1 5 0 100.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40540 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40540 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.1053 x 10-2 0 4 0.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40530 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '198.101'
Avg. expression score in LCM sample: '56.587'
Tissue used: 'pure endosperm, no chalazal'
AT5G40530 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '238.187'
Avg. expression score in LCM sample: '56.587'
Tissue used: 'full endosperm'
AT5G40530 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '290.591'
Avg. embryo expression (LCM): '387.96'
AT5G40530 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40530 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40530 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40520 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.47845 x 10-1 49 11 17 40 81.67% 70.18% 60 57 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000185'
Avg. expression score for this sample: '65.5695'
Avg. expression score in LCM sample: '27.5292'
Tissue used: 'pure endosperm, no chalazal'
AT5G40520 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.86 x 10-4 91 33 20 124 73.39% 86.11% 124 144 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000185'
Avg. expression score for this sample: '100.37'
Avg. expression score in LCM sample: '27.5292'
Tissue used: 'full endosperm'
AT5G40520 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.89272 x 10-1 29 41 11 7 41.43% 38.89% 70 18 TAIR8 Avg. embryo expression (dissected): '74.1756'
Avg. embryo expression (LCM): '67.5023'
AT5G40520 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.87618 x 10-1 18 3 85.71% 21 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40520 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.30807 x 10-1 183 42 81.33% 225 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40520 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.0 x 10-7 184 11 94.36% 195 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40510 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.444444'
Avg. expression score for this sample: '.185003'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G40510 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 4 0 0 0 100.00% 4 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.444444'
Avg. expression score for this sample: '.773281'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G40510 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 1 100.00% 0 1 TAIR8 Avg. embryo expression (dissected): '.537112'
Avg. embryo expression (LCM): '0'
AT5G40510 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40510 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40510 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40500 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 3 0 0 0 100.00% 3 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '1.48379'
Avg. expression score in LCM sample: '4.233'
Tissue used: 'pure endosperm, no chalazal'
AT5G40500 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 4 5 0 4 44.44% 100.00% 9 4 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.82797'
Avg. expression score in LCM sample: '4.233'
Tissue used: 'full endosperm'
AT5G40500 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.36461 x 10-1 2 11 0 1 15.38% 100.00% 13 1 TAIR8 Avg. embryo expression (dissected): '4.89134'
Avg. embryo expression (LCM): '7.23374'
AT5G40500 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40500 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40500 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.30444 x 10-1 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40490 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.92999 x 10-1 559 227 449 697 71.12% 60.82% 786 1146 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.009'
Avg. expression score for this sample: '584.863'
Avg. expression score in LCM sample: '133.78'
Tissue used: 'pure endosperm, no chalazal'
AT5G40490 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.7 x 10-8 377 180 127 629 67.68% 83.20% 557 756 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.009'
Avg. expression score for this sample: '229.417'
Avg. expression score in LCM sample: '133.78'
Tissue used: 'full endosperm'
AT5G40490 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.102 x 10-3 1461 1145 491 424 56.06% 46.34% 2606 915 TAIR8 Avg. embryo expression (dissected): '1542.5'
Avg. embryo expression (LCM): '756.993'
AT5G40490 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.9 x 10-14 201 18 91.78% 219 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40490 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.5 x 10-16 699 140 83.31% 839 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40490 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.2 x 10-10 775 196 79.81% 971 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40480 EMB3012 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.67292 x 10-1 43 18 14 30 70.49% 68.18% 61 44 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.496239'
Avg. expression score for this sample: '69.211'
Avg. expression score in LCM sample: '47.2391'
Tissue used: 'pure endosperm, no chalazal'
AT5G40480 EMB3012 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.03396 x 10-1 58 24 41 90 70.73% 68.70% 82 131 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.496239'
Avg. expression score for this sample: '58.5588'
Avg. expression score in LCM sample: '47.2391'
Tissue used: 'full endosperm'
AT5G40480 EMB3012 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.19562 x 10-1 64 82 26 19 43.84% 42.22% 146 45 TAIR8 Avg. embryo expression (dissected): '169.283'
Avg. embryo expression (LCM): '181.836'
AT5G40480 EMB3012 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 8.5785 x 10-2 7 8 46.67% 15 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40480 EMB3012 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.09699 x 10-1 89 55 61.81% 144 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40480 EMB3012 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 9.8 x 10-11 257 27 90.49% 284 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40470 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 6 0 1 0 100.00% 0.00% 6 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.002571'
Avg. expression score for this sample: '13.2778'
Avg. expression score in LCM sample: '4.67394'
Tissue used: 'pure endosperm, no chalazal'
AT5G40470 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.247 x 10-3 87 1 17 5 98.86% 22.73% 88 22 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.002571'
Avg. expression score for this sample: '102.443'
Avg. expression score in LCM sample: '4.67394'
Tissue used: 'full endosperm'
AT5G40470 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 6.08392 x 10-1 5 2 0 0 71.43% 7 0 TAIR8 Avg. embryo expression (dissected): '22.3405'
Avg. embryo expression (LCM): '13.2995'
AT5G40470 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.391 x 10-3 1 4 20.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40470 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.978 x 10-3 2 5 28.57% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40470 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.3474 x 10-2 31 0 100.00% 31 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G40460 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 7 2 2 1 77.78% 33.33% 9 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '43.0316'
Avg. expression score in LCM sample: '4.29179'
Tissue used: 'pure endosperm, no chalazal'
AT5G40460 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 5 4 13 25 55.56% 65.79% 9 38 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '39.8834'
Avg. expression score in LCM sample: '4.29179'
Tissue used: 'full endosperm'
AT5G40460 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 5.45455 x 10-1 1 4 1 0 20.00% 0.00% 5 1 TAIR8 Avg. embryo expression (dissected): '76.9531'
Avg. embryo expression (LCM): '45.8388'
AT5G40460 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.91733 x 10-1 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'