Displaying data sets 17801 - 17900 of 169464 in total
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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G41370 XPB1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.2 x 10-7 119 10 92.25% 129 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41370 XPB1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.0 x 10-30 327 9 97.32% 336 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41360 XPB2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.4055 x 10-1 76 33 39 76 69.72% 66.09% 109 115 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.042567'
Avg. expression score for this sample: '245.601'
Avg. expression score in LCM sample: '168.556'
Tissue used: 'pure endosperm, no chalazal'
AT5G41360 XPB2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.6187 x 10-2 200 40 110 206 83.33% 65.19% 240 316 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.042567'
Avg. expression score for this sample: '346.213'
Avg. expression score in LCM sample: '168.556'
Tissue used: 'full endosperm'
AT5G41360 XPB2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.3223 x 10-1 41 54 11 11 43.16% 50.00% 95 22 TAIR8 Avg. embryo expression (dissected): '173.586'
Avg. embryo expression (LCM): '167.481'
AT5G41360 XPB2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 6.13827 x 10-1 35 11 76.09% 46 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41360 XPB2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.651 x 10-3 579 164 77.93% 743 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41360 XPB2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 7.6 x 10-7 605 130 82.31% 735 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41350 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.04572 x 10-1 65 13 26 40 83.33% 60.61% 78 66 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.129614'
Avg. expression score for this sample: '145.474'
Avg. expression score in LCM sample: '62.569'
Tissue used: 'pure endosperm, no chalazal'
AT5G41350 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.1552 x 10-1 60 22 31 76 73.17% 71.03% 82 107 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.129614'
Avg. expression score for this sample: '121.123'
Avg. expression score in LCM sample: '62.569'
Tissue used: 'full endosperm'
AT5G41350 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.70713 x 10-1 14 6 2 5 70.00% 71.43% 20 7 TAIR8 Avg. embryo expression (dissected): '33.7998'
Avg. embryo expression (LCM): '28.0935'
AT5G41350 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.48436 x 10-1 21 4 84.00% 25 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41350 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.9846 x 10-1 48 11 81.36% 59 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41350 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.962 x 10-3 95 15 86.36% 110 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41340 UBC4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '897.319'
Avg. expression score in LCM sample: '367.83'
Tissue used: 'pure endosperm, no chalazal'
AT5G41340 UBC4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1064.02'
Avg. expression score in LCM sample: '367.83'
Tissue used: 'full endosperm'
AT5G41340 UBC4 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '601.487'
Avg. embryo expression (LCM): '364.689'
AT5G41340 UBC4 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41340 UBC4 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41340 UBC4 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41330 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 2 1 1 2 66.67% 66.67% 3 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '124.073'
Avg. expression score in LCM sample: '88.746'
Tissue used: 'pure endosperm, no chalazal'
AT5G41330 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 5 1 1 0 83.33% 0.00% 6 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '223.944'
Avg. expression score in LCM sample: '88.746'
Tissue used: 'full endosperm'
AT5G41330 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 1 0 0.00% 0 1 TAIR8 Avg. embryo expression (dissected): '127.617'
Avg. embryo expression (LCM): '76.3436'
AT5G41330 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.77778 x 10-1 5 0 100.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41330 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 2 1 66.67% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41330 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 9.5652 x 10-2 12 0 100.00% 12 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41320 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.68054 x 10-1 9 3 4 12 75.00% 75.00% 12 16 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.192461'
Avg. expression score for this sample: '18.7067'
Avg. expression score in LCM sample: '16.153'
Tissue used: 'pure endosperm, no chalazal'
AT5G41320 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.31078 x 10-1 25 3 6 10 89.29% 62.50% 28 16 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.192461'
Avg. expression score for this sample: '24.5931'
Avg. expression score in LCM sample: '16.153'
Tissue used: 'full endosperm'
AT5G41320 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.90529 x 10-1 5 6 5 1 45.45% 16.67% 11 6 TAIR8 Avg. embryo expression (dissected): '17.8334'
Avg. embryo expression (LCM): '16.2382'
AT5G41320 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41320 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.6021 x 10-2 44 26 62.86% 70 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41320 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.4795 x 10-2 158 85 65.02% 243 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41315 GL3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.935998'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G41315 GL3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1.52132'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G41315 GL3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '22.3791'
Avg. embryo expression (LCM): '36.5957'
AT5G41315 GL3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41315 GL3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41315 GL3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41310 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.1803'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G41310 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.063107'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G41310 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G41310 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41310 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41310 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41300 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G41300 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 0 0 1 0 0.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.193884'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G41300 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '1.3472'
Avg. embryo expression (LCM): '0'
AT5G41300 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41300 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41300 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41290 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G41290 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.209893'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G41290 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G41290 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41290 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41290 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41280 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G41280 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.321679'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G41280 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.268319'
Avg. embryo expression (LCM): '0'
AT5G41280 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41280 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41280 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41270 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.40045 x 10-1 26 18 7 33 59.09% 82.50% 44 40 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.01565'
Avg. expression score for this sample: '30.8574'
Avg. expression score in LCM sample: '17.4023'
Tissue used: 'pure endosperm, no chalazal'
AT5G41270 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.384 x 10-3 78 14 12 38 84.78% 76.00% 92 50 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.01565'
Avg. expression score for this sample: '43.7705'
Avg. expression score in LCM sample: '17.4023'
Tissue used: 'full endosperm'
AT5G41270 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 20 18 4 3 52.63% 42.86% 38 7 TAIR8 Avg. embryo expression (dissected): '23.2862'
Avg. embryo expression (LCM): '29.7387'
AT5G41270 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.076 x 10-3 5 8 38.46% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41270 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.94065 x 10-1 43 17 71.67% 60 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41270 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 9.47 x 10-4 82 6 93.18% 88 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41265 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G41265 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G41265 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G41265 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41265 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41265 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41260 BSK8 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.75589 x 10-1 52 14 12 30 78.79% 71.43% 66 42 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.101945'
Avg. expression score for this sample: '74.3121'
Avg. expression score in LCM sample: '65.3322'
Tissue used: 'pure endosperm, no chalazal'
AT5G41260 BSK8 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.04781 x 10-1 93 29 64 132 76.23% 67.35% 122 196 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.101945'
Avg. expression score for this sample: '144.16'
Avg. expression score in LCM sample: '65.3322'
Tissue used: 'full endosperm'
AT5G41260 BSK8 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.32973 x 10-1 29 16 5 4 64.44% 44.44% 45 9 TAIR8 Avg. embryo expression (dissected): '60.5637'
Avg. embryo expression (LCM): '66.7614'
AT5G41260 BSK8 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.94155 x 10-1 36 9 80.00% 45 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41260 BSK8 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.35055 x 10-1 213 63 77.17% 276 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41260 BSK8 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.8 x 10-11 148 7 95.48% 155 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41250 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 3.758 x 10-3 0 0 0 23 100.00% 0 23 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '4.8e-11'
Avg. expression score for this sample: '13.2958'
Avg. expression score in LCM sample: '2.61623'
Tissue used: 'pure endosperm, no chalazal'
AT5G41250 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.1 x 10-8 0 0 0 71 100.00% 0 71 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '4.8e-11'
Avg. expression score for this sample: '16.6633'
Avg. expression score in LCM sample: '2.61623'
Tissue used: 'full endosperm'
AT5G41250 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 2 100.00% 0 2 TAIR8 Avg. embryo expression (dissected): '1.32541'
Avg. embryo expression (LCM): '0'
AT5G41250 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 35 0 100.00% 35 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41250 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.6 x 10-13 615 251 71.02% 866 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41250 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.3497 x 10-2 49 3 94.23% 52 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41240 GSTT2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 3 0 0 0 100.00% 3 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '49.6683'
Avg. expression score in LCM sample: '20.3125'
Tissue used: 'pure endosperm, no chalazal'
AT5G41240 GSTT2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 4 0 2 1 100.00% 33.33% 4 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '66.1073'
Avg. expression score in LCM sample: '20.3125'
Tissue used: 'full endosperm'
AT5G41240 GSTT2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 2 0 1 0 100.00% 0.00% 2 1 TAIR8 Avg. embryo expression (dissected): '57.8043'
Avg. embryo expression (LCM): '41.1545'
AT5G41240 GSTT2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41240 GSTT2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.9779 x 10-2 3 6 33.33% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41240 GSTT2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41220 GSTT3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 5 1 3 6 83.33% 66.67% 6 9 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '26.3039'
Avg. expression score in LCM sample: '11.0381'
Tissue used: 'pure endosperm, no chalazal'
AT5G41220 GSTT3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 9 1 6 3 90.00% 33.33% 10 9 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '34.9533'
Avg. expression score in LCM sample: '11.0381'
Tissue used: 'full endosperm'
AT5G41220 GSTT3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.37186 x 10-1 4 3 0 2 57.14% 100.00% 7 2 TAIR8 Avg. embryo expression (dissected): '29.8142'
Avg. embryo expression (LCM): '31.4341'
AT5G41220 GSTT3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41220 GSTT3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41220 GSTT3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.0552 x 10-2 14 0 100.00% 14 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G41210 GSTT1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.58804 x 10-1 16 13 12 29 55.17% 70.73% 29 41 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.15253'
Avg. expression score for this sample: '45.4341'
Avg. expression score in LCM sample: '23.3256'
Tissue used: 'pure endosperm, no chalazal'
AT5G41210 GSTT1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.5114 x 10-2 54 29 17 90 65.06% 84.11% 83 107 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.15253'
Avg. expression score for this sample: '110.916'
Avg. expression score in LCM sample: '23.3256'
Tissue used: 'full endosperm'