| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G06550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.88877 x 10-1 | 16 | 9 | 1 | 3 | 64.00% | 75.00% | 25 | 4 | TAIR8 |
Avg. embryo expression (dissected): '53.6504' Avg. embryo expression (LCM): '43.0508' |
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| AT1G06550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.3 x 10-9 | 44 | 6 | 8 | 114 | 88.00% | 93.44% | 50 | 122 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-07' Avg. expression score for this sample: '88.8327' Avg. expression score in LCM sample: '5.70279' Tissue used: 'full endosperm' |
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| AT1G06550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.31964 x 10-1 | 21 | 0 | 100.00% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 3 | 3 | 3 | 72.73% | 50.00% | 11 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-07' Avg. expression score for this sample: '31.248' Avg. expression score in LCM sample: '5.70279' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 2 | 0 | 0.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.73039' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.30769 x 10-1 | 6 | 0 | 0 | 1 | 100.00% | 100.00% | 6 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.45547' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G06540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.85714 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '22.0767' Avg. embryo expression (LCM): '0' |
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| AT1G06530 | PMD2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.52617 x 10-1 | 2032 | 2055 | 602 | 704 | 49.72% | 53.91% | 4087 | 1306 | TAIR8 |
Avg. embryo expression (dissected): '4579.27' Avg. embryo expression (LCM): '2413.96' |
|||
| AT1G06530 | PMD2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.3 x 10-22 | 2373 | 726 | 857 | 2278 | 76.57% | 72.66% | 3099 | 3135 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '8.8e-10' Avg. expression score for this sample: '2196.04' Avg. expression score in LCM sample: '489.926' Tissue used: 'full endosperm' |
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| AT1G06530 | PMD2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.86 x 10-4 | 469 | 138 | 77.27% | 607 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06530 | PMD2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.27205 x 10-1 | 1700 | 977 | 701 | 1444 | 63.50% | 67.32% | 2677 | 2145 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '8.8e-10' Avg. expression score for this sample: '2685.39' Avg. expression score in LCM sample: '489.926' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06530 | PMD2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 4128 | 603 | 87.25% | 4731 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06530 | PMD2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.0 x 10-5 | 3030 | 1071 | 73.88% | 4101 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06520 | GPAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06520 | GPAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.2 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06520 | GPAT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 5 | 0 | 1 | 28.57% | 100.00% | 7 | 1 | TAIR8 |
Avg. embryo expression (dissected): '39.7424' Avg. embryo expression (LCM): '37.8139' |
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| AT1G06520 | GPAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.237744' Avg. expression score for this sample: '7.50729' Avg. expression score in LCM sample: '2.21939' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06520 | GPAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06520 | GPAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.37744 x 10-1 | 4 | 3 | 5 | 1 | 57.14% | 16.67% | 7 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.237744' Avg. expression score for this sample: '14.0558' Avg. expression score in LCM sample: '2.21939' Tissue used: 'full endosperm' |
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| AT1G06515 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '274.547' Avg. expression score in LCM sample: '224.32' Tissue used: 'full endosperm' |
|||||||
| AT1G06515 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06515 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '195.223' Avg. expression score in LCM sample: '224.32' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06515 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06515 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06515 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '301.769' Avg. embryo expression (LCM): '417.284' |
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| AT1G06510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '13.8464' Avg. embryo expression (LCM): '29.6634' |
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| AT1G06510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '11.9935' Avg. expression score in LCM sample: '8.99512' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 1 | 0 | 100.00% | 0.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '16.2505' Avg. expression score in LCM sample: '8.99512' Tissue used: 'full endosperm' |
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| AT1G06510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.3 x 10-10 | 133 | 7 | 95.00% | 140 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.628 x 10-3 | 77 | 11 | 87.50% | 88 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.14542 x 10-1 | 60 | 37 | 9 | 11 | 61.86% | 55.00% | 97 | 20 | TAIR8 |
Avg. embryo expression (dissected): '150.93' Avg. embryo expression (LCM): '166.954' |
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| AT1G06500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.7787 x 10-2 | 88 | 15 | 51 | 99 | 85.44% | 66.00% | 103 | 150 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.178952' Avg. expression score for this sample: '157.381' Avg. expression score in LCM sample: '32.5706' Tissue used: 'full endosperm' |
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| AT1G06500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.1672 x 10-2 | 26 | 3 | 89.66% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 55 | 16 | 25 | 25 | 77.46% | 50.00% | 71 | 50 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.178952' Avg. expression score for this sample: '127.3' Avg. expression score in LCM sample: '32.5706' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06490 | CalS7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.37316' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06490 | CalS7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06490 | CalS7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4.9927' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G06490 | CalS7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06490 | CalS7 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06490 | CalS7 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '10.809' Avg. embryo expression (LCM): '7.40956' |
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| AT1G06480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G06480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G06480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06475 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06475 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.63502 x 10-1 | 9 | 1 | 90.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06475 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '39.325' Avg. embryo expression (LCM): '31.8486' |
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| AT1G06475 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 0 | 2 | 5 | 100.00% | 71.43% | 3 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.325596' Avg. expression score for this sample: '42.2735' Avg. expression score in LCM sample: '23.9576' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06475 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06475 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.69956 x 10-1 | 11 | 3 | 4 | 13 | 78.57% | 76.47% | 14 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.325596' Avg. expression score for this sample: '55.7151' Avg. expression score in LCM sample: '23.9576' Tissue used: 'full endosperm' |
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| AT1G06470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 2.71 x 10-4 | 54 | 14 | 19 | 104 | 79.41% | 84.55% | 68 | 123 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000108' Avg. expression score for this sample: '89.1505' Avg. expression score in LCM sample: '52.4569' Tissue used: 'full endosperm' |
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| AT1G06470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.40861 x 10-1 | 26 | 7 | 78.79% | 33 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G06470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 1.60405 x 10-1 | 22 | 5 | 8 | 25 | 81.48% | 75.76% | 27 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000108' Avg. expression score for this sample: '41.3283' Avg. expression score in LCM sample: '52.4569' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.991 x 10-3 | 124 | 9 | 93.23% | 133 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G06470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.1568 x 10-2 | 124 | 12 | 91.18% | 136 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G06470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 20 | 25 | 1 | 5 | 44.44% | 83.33% | 45 | 6 | TAIR8 |
Avg. embryo expression (dissected): '44.3138' Avg. embryo expression (LCM): '39.9991' |
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| AT1G06460 | ACD32.1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.90793 x 10-1 | 12 | 5 | 0 | 3 | 70.59% | 100.00% | 17 | 3 | TAIR8 |
Avg. embryo expression (dissected): '21.1418' Avg. embryo expression (LCM): '14.4172' |
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| AT1G06460 | ACD32.1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.80115 x 10-1 | 15 | 1 | 3 | 1 | 93.75% | 25.00% | 16 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.021972' Avg. expression score for this sample: '23.4325' Avg. expression score in LCM sample: '22.914' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06460 | ACD32.1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.86299 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06460 | ACD32.1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.1564 x 10-2 | 22 | 3 | 5 | 24 | 88.00% | 82.76% | 25 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.021972' Avg. expression score for this sample: '31.8871' Avg. expression score in LCM sample: '22.914' Tissue used: 'full endosperm' |
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| AT1G06460 | ACD32.1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.8 x 10-5 | 16 | 19 | 45.71% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06460 | ACD32.1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.08203 x 10-1 | 66 | 6 | 91.67% | 72 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06450 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.8516 x 10-1 | 20 | 4 | 83.33% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.38726 x 10-1 | 14 | 7 | 66.67% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06450 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 0 | 1 | 1 | 100.00% | 50.00% | 2 | 2 | TAIR8 |
Avg. embryo expression (dissected): '34.0525' Avg. embryo expression (LCM): '20.0309' |
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| AT1G06450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.94389 x 10-1 | 5 | 0 | 2 | 9 | 100.00% | 81.82% | 5 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.134614' Avg. expression score for this sample: '26.8787' Avg. expression score in LCM sample: '26.6473' Tissue used: 'full endosperm' |
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| AT1G06450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.86466 x 10-1 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.134614' Avg. expression score for this sample: '22.1192' Avg. expression score in LCM sample: '26.6473' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.00321 x 10-1 | 18 | 30 | 10 | 77 | 37.50% | 88.51% | 48 | 87 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.224974' Avg. expression score for this sample: '30.2042' Avg. expression score in LCM sample: '14.9478' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.4061 x 10-2 | 13 | 0 | 100.00% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.07133 x 10-1 | 74 | 70 | 24 | 153 | 51.39% | 86.44% | 144 | 177 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.224974' Avg. expression score for this sample: '55.0176' Avg. expression score in LCM sample: '14.9478' Tissue used: 'full endosperm' |
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| AT1G06440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.8 x 10-7 | 227 | 34 | 86.97% | 261 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06440 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-15 | 126 | 1 | 99.21% | 127 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G06440 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.372 x 10-3 | 36 | 110 | 7 | 30 | 24.66% | 81.08% | 146 | 37 | TAIR8 |
Avg. embryo expression (dissected): '57.4689' Avg. embryo expression (LCM): '46.5923' |
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| AT1G06430 | FTSH8 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.19363 x 10-1 | 32 | 20 | 13 | 8 | 61.54% | 38.10% | 52 | 21 | TAIR8 |
Avg. embryo expression (dissected): '267.516' Avg. embryo expression (LCM): '165.221' |
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| AT1G06430 | FTSH8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.8631 x 10-1 | 187 | 62 | 105 | 132 | 75.10% | 55.70% | 249 | 237 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '566.079' Avg. expression score in LCM sample: '132.605' Tissue used: 'full endosperm' |
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| AT1G06430 | FTSH8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.98018 x 10-1 | 25 | 17 | 59.52% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06430 | FTSH8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.67635 x 10-1 | 50 | 16 | 15 | 31 | 75.76% | 67.39% | 66 | 46 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '291.227' Avg. expression score in LCM sample: '132.605' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06430 | FTSH8 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-6 | 86 | 10 | 89.58% | 96 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06430 | FTSH8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-5 | 56 | 5 | 91.80% | 61 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06420 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '910.154' Avg. expression score in LCM sample: '172.392' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G06420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '727.809' Avg. expression score in LCM sample: '172.392' Tissue used: 'full endosperm' |
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| AT1G06420 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1256' Avg. embryo expression (LCM): '664.751' |
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| AT1G06410 | TPS7 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.31606 x 10-1 | 50 | 46 | 12 | 20 | 52.08% | 62.50% | 96 | 32 | TAIR8 |
Avg. embryo expression (dissected): '468.013' Avg. embryo expression (LCM): '264.848' |
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| AT1G06410 | TPS7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.69861 x 10-1 | 54 | 15 | 78.26% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06410 | TPS7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.5138 x 10-2 | 74 | 27 | 36 | 110 | 73.27% | 75.34% | 101 | 146 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000029' Avg. expression score for this sample: '553.331' Avg. expression score in LCM sample: '230.419' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G06410 | TPS7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.23 x 10-4 | 267 | 115 | 133 | 453 | 69.90% | 77.30% | 382 | 586 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000029' Avg. expression score for this sample: '890.524' Avg. expression score in LCM sample: '230.419' Tissue used: 'full endosperm' |
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| AT1G06410 | TPS7 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-11 | 349 | 39 | 89.95% | 388 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G06410 | TPS7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.9724 x 10-1 | 297 | 85 | 77.75% | 382 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |