Displaying data sets 164101 - 164200 of 169464 in total
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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT1G09140 SR30 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.33769 x 10-1 117 47 71 183 71.34% 72.05% 164 254 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '3.9e-06'
Avg. expression score for this sample: '1206.63'
Avg. expression score in LCM sample: '213.296'
Tissue used: 'pure endosperm, no chalazal'
AT1G09140 SR30 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.23635 x 10-1 63 59 24 15 51.64% 38.46% 122 39 TAIR8 Avg. embryo expression (dissected): '905.585'
Avg. embryo expression (LCM): '194.206'
AT1G09140 SR30 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.0 x 10-9 255 21 92.39% 276 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09140 SR30 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 8.60268 x 10-1 37 10 78.72% 47 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09140 SR30 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.1 x 10-7 200 35 36 133 85.11% 78.70% 235 169 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '3.9e-06'
Avg. expression score for this sample: '505.827'
Avg. expression score in LCM sample: '213.296'
Tissue used: 'full endosperm'
AT1G09140 SR30 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 9.16595 x 10-1 118 34 77.63% 152 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09130 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.71004 x 10-1 19 10 65.52% 29 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09130 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.44603 x 10-1 22 4 4 14 84.62% 77.78% 26 18 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.477511'
Avg. expression score for this sample: '312.965'
Avg. expression score in LCM sample: '119.053'
Tissue used: 'full endosperm'
AT1G09130 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 8 3 9 12 72.73% 57.14% 11 21 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.477511'
Avg. expression score for this sample: '216.386'
Avg. expression score in LCM sample: '119.053'
Tissue used: 'pure endosperm, no chalazal'
AT1G09130 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 5 1 83.33% 6 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09130 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 24 18 7 2 57.14% 22.22% 42 9 TAIR8 Avg. embryo expression (dissected): '497.37'
Avg. embryo expression (LCM): '359.74'
AT1G09130 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 8.8 x 10-4 39 1 97.50% 40 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09110 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09110 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09110 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT1G09110 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT1G09110 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09110 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT1G09100 RPT5B endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '157.613'
Avg. expression score in LCM sample: '116.422'
Tissue used: 'pure endosperm, no chalazal'
AT1G09100 RPT5B endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09100 RPT5B endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09100 RPT5B endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09100 RPT5B endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '228.318'
Avg. expression score in LCM sample: '116.422'
Tissue used: 'full endosperm'
AT1G09100 RPT5B embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '173.108'
Avg. embryo expression (LCM): '107.991'
AT1G09090 RBOHB embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '31.7999'
Avg. embryo expression (LCM): '8.40169'
AT1G09090 RBOHB endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '18.8595'
Avg. expression score in LCM sample: '.543823'
Tissue used: 'full endosperm'
AT1G09090 RBOHB endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09090 RBOHB endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '5.96466'
Avg. expression score in LCM sample: '.543823'
Tissue used: 'pure endosperm, no chalazal'
AT1G09090 RBOHB endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09090 RBOHB endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09080 BIP3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09080 BIP3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09080 BIP3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09080 BIP3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '14.1347'
Avg. expression score in LCM sample: '1.3963'
Tissue used: 'full endosperm'
AT1G09080 BIP3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '2.02255'
Avg. embryo expression (LCM): '0'
AT1G09080 BIP3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '4.8904'
Avg. expression score in LCM sample: '1.3963'
Tissue used: 'pure endosperm, no chalazal'
AT1G09070 SRC2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 3 0 3 0 100.00% 0.00% 3 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.517082'
Avg. expression score for this sample: '5701.16'
Avg. expression score in LCM sample: '161.501'
Tissue used: 'pure endosperm, no chalazal'
AT1G09070 SRC2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 4 1 80.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09070 SRC2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.52608 x 10-1 5 0 100.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09070 SRC2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 2 100.00% 0 2 TAIR8 Avg. embryo expression (dissected): '1860.48'
Avg. embryo expression (LCM): '211.461'
AT1G09070 SRC2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.34614 x 10-1 6 0 2 10 100.00% 83.33% 6 12 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.517082'
Avg. expression score for this sample: '4859.1'
Avg. expression score in LCM sample: '161.501'
Tissue used: 'full endosperm'
AT1G09070 SRC2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09060 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.20896 x 10-1 38 11 77.55% 49 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09060 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 9.7824 x 10-2 86 31 27 80 73.50% 74.77% 117 107 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.374189'
Avg. expression score for this sample: '114.485'
Avg. expression score in LCM sample: '43.1384'
Tissue used: 'full endosperm'
AT1G09060 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.27164 x 10-1 48 38 8 17 55.81% 68.00% 86 25 TAIR8 Avg. embryo expression (dissected): '106.124'
Avg. embryo expression (LCM): '67.0251'
AT1G09060 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.31918 x 10-1 63 40 29 65 61.17% 69.15% 103 94 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.374189'
Avg. expression score for this sample: '81.3774'
Avg. expression score in LCM sample: '43.1384'
Tissue used: 'pure endosperm, no chalazal'
AT1G09060 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.9 x 10-7 85 6 93.41% 91 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09060 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.0326 x 10-2 25 3 89.29% 28 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09050 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09050 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.1453 x 10-1 20 1 95.24% 21 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09050 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 1 0 0.00% 0 1 TAIR8 Avg. embryo expression (dissected): '9.36959'
Avg. embryo expression (LCM): '9.48173'
AT1G09050 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 0 1 1 4 0.00% 80.00% 1 5 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '15.3903'
Avg. expression score in LCM sample: '4.233'
Tissue used: 'full endosperm'
AT1G09050 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 5 4 55.56% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09050 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '6.69981'
Avg. expression score in LCM sample: '4.233'
Tissue used: 'pure endosperm, no chalazal'
AT1G09040 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 3 2 0 5 60.00% 100.00% 5 5 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.450839'
Avg. expression score for this sample: '16.7299'
Avg. expression score in LCM sample: '12.3609'
Tissue used: 'pure endosperm, no chalazal'
AT1G09040 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 6.61374 x 10-1 8 1 88.89% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09040 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09040 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.5008 x 10-1 15 1 93.75% 16 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09040 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.64807 x 10-1 10 4 3 12 71.43% 80.00% 14 15 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.450839'
Avg. expression score for this sample: '31.9432'
Avg. expression score in LCM sample: '12.3609'
Tissue used: 'full endosperm'
AT1G09040 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0 0 0.00% 1 0 TAIR8 Avg. embryo expression (dissected): '10.3718'
Avg. embryo expression (LCM): '11.3781'
AT1G09030 NF-YB4 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT1G09030 NF-YB4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT1G09030 NF-YB4 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09030 NF-YB4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1.22393'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT1G09030 NF-YB4 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09030 NF-YB4 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09026 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09026 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09026 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09026 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT1G09026 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT1G09026 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT1G09020 SNF4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 12 5 3 1 70.59% 25.00% 17 4 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.336591'
Avg. expression score for this sample: '544.299'
Avg. expression score in LCM sample: '348.017'
Tissue used: 'pure endosperm, no chalazal'
AT1G09020 SNF4 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.86486 x 10-1 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09020 SNF4 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.81 x 10-4 46 7 86.79% 53 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09020 SNF4 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 11 9 5 4 55.00% 44.44% 20 9 TAIR8 Avg. embryo expression (dissected): '620.805'
Avg. embryo expression (LCM): '428.499'
AT1G09020 SNF4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.72303 x 10-1 2 3 6 4 40.00% 40.00% 5 10 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.336591'
Avg. expression score for this sample: '429.444'
Avg. expression score in LCM sample: '348.017'
Tissue used: 'full endosperm'
AT1G09020 SNF4 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.4973 x 10-2 27 9 75.00% 36 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09010 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 6 0 100.00% 6 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09010 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.64734 x 10-1 4 1 0 9 80.00% 100.00% 5 9 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.168582'
Avg. expression score for this sample: '104.869'
Avg. expression score in LCM sample: '98.9905'
Tissue used: 'full endosperm'
AT1G09010 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 1 1 1 1 50.00% 50.00% 2 2 TAIR8 Avg. embryo expression (dissected): '108.947'
Avg. embryo expression (LCM): '79.1693'
AT1G09010 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 0 0 0 1 100.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.168582'
Avg. expression score for this sample: '64.5456'
Avg. expression score in LCM sample: '98.9905'
Tissue used: 'pure endosperm, no chalazal'
AT1G09010 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 3 0 100.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09010 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09000 NP1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09000 NP1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.02941 x 10-1 6 0 0 3 100.00% 100.00% 6 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.355036'
Avg. expression score for this sample: '18.9092'
Avg. expression score in LCM sample: '22.1792'
Tissue used: 'full endosperm'
AT1G09000 NP1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.6865 x 10-1 5 0 100.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09000 NP1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.49917 x 10-1 6 2 1 1 75.00% 50.00% 8 2 TAIR8 Avg. embryo expression (dissected): '31.7496'
Avg. embryo expression (LCM): '37.3492'
AT1G09000 NP1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G09000 NP1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 8 1 4 6 88.89% 60.00% 9 10 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.355036'
Avg. expression score for this sample: '27.7835'
Avg. expression score in LCM sample: '22.1792'
Tissue used: 'pure endosperm, no chalazal'
AT1G08990 PGSIP5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.5 x 10-5 32 1 0 16 96.97% 100.00% 33 16 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.6e-37'
Avg. expression score for this sample: '17.0502'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT1G08990 PGSIP5 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 59 0 100.00% 59 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G08990 PGSIP5 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 16 0 100.00% 16 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G08990 PGSIP5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.0 169 0 1 132 100.00% 99.25% 169 133 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.6e-37'
Avg. expression score for this sample: '106.171'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT1G08990 PGSIP5 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 7.5 x 10-8 83 13 86.46% 96 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G08990 PGSIP5 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.15248'
Avg. embryo expression (LCM): '0'
AT1G08985 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT1G08985 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT1G08985 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '3.6738'
Avg. expression score in LCM sample: '34.9075'
Tissue used: 'pure endosperm, no chalazal'
AT1G08985 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '3.27418'
Avg. expression score in LCM sample: '34.9075'
Tissue used: 'full endosperm'