| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G09560 | GLP5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.5 x 10-10 | 62 | 10 | 3 | 110 | 86.11% | 97.35% | 72 | 113 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.0e-11' Avg. expression score for this sample: '128.322' Avg. expression score in LCM sample: '3.13066' Tissue used: 'full endosperm' |
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| AT1G09560 | GLP5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.11838 x 10-1 | 22 | 10 | 9 | 7 | 68.75% | 43.75% | 32 | 16 | TAIR8 |
Avg. embryo expression (dissected): '52.0624' Avg. embryo expression (LCM): '8.01237' |
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| AT1G09560 | GLP5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 66 | 6 | 91.67% | 72 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09560 | GLP5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 26 | 2 | 92.86% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09560 | GLP5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.98 x 10-4 | 251 | 5 | 98.05% | 256 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09560 | GLP5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.8117 x 10-2 | 33 | 1 | 9 | 15 | 97.06% | 62.50% | 34 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.0e-11' Avg. expression score for this sample: '29.9333' Avg. expression score in LCM sample: '3.13066' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.42661 x 10-1 | 77 | 1 | 45 | 34 | 98.72% | 43.04% | 78 | 79 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000027' Avg. expression score for this sample: '148.166' Avg. expression score in LCM sample: '8.37781' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1541 | 19 | 98.78% | 1560 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.66431 x 10-1 | 888 | 253 | 77.83% | 1141 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.1 x 10-7 | 37 | 0 | 22 | 136 | 100.00% | 86.08% | 37 | 158 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000027' Avg. expression score for this sample: '105.903' Avg. expression score in LCM sample: '8.37781' Tissue used: 'full endosperm' |
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| AT1G09550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.9622 x 10-2 | 12 | 2 | 4 | 10 | 85.71% | 71.43% | 14 | 14 | TAIR8 |
Avg. embryo expression (dissected): '43.7684' Avg. embryo expression (LCM): '5.11134' |
||||
| AT1G09550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.93276 x 10-1 | 37 | 14 | 72.55% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09540 | MYB61 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09540 | MYB61 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '431.847' Avg. expression score in LCM sample: '5.89386' Tissue used: 'full endosperm' |
||||||
| AT1G09540 | MYB61 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09540 | MYB61 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09540 | MYB61 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '5.4276' Avg. embryo expression (LCM): '0' |
|||||
| AT1G09540 | MYB61 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '73.0159' Avg. expression score in LCM sample: '5.89386' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G09530 | PIF3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 20 | 13 | 5 | 18 | 60.61% | 78.26% | 33 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.902867' Avg. expression score for this sample: '11.1232' Avg. expression score in LCM sample: '1.51389' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09530 | PIF3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.95352 x 10-1 | 23 | 23 | 13 | 5 | 50.00% | 27.78% | 46 | 18 | TAIR8 |
Avg. embryo expression (dissected): '17.7784' Avg. embryo expression (LCM): '21.9022' |
|||
| AT1G09530 | PIF3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.20657 x 10-1 | 15 | 9 | 62.50% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09530 | PIF3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.69127 x 10-1 | 8 | 6 | 57.14% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09530 | PIF3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.58552 x 10-1 | 25 | 13 | 21 | 34 | 65.79% | 61.82% | 38 | 55 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.902867' Avg. expression score for this sample: '9.88854' Avg. expression score in LCM sample: '1.51389' Tissue used: 'full endosperm' |
||||
| AT1G09530 | PIF3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.539 x 10-3 | 20 | 1 | 95.24% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09520 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 3 | 0 | 1 | 0.00% | 100.00% | 3 | 1 | TAIR8 |
Avg. embryo expression (dissected): '75.1709' Avg. embryo expression (LCM): '97.8313' |
||||
| AT1G09520 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 1 | 0 | 1 | 50.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '53.5346' Avg. expression score in LCM sample: '14.6391' Tissue used: 'full endosperm' |
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| AT1G09520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 2 | 0 | 2 | 33.33% | 100.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '60.4713' Avg. expression score in LCM sample: '14.6391' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G09520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.90909 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.7765 x 10-1 | 197 | 130 | 60.24% | 327 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 4 | 7 | 100.00% | 63.64% | 2 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '80.9543' Avg. expression score in LCM sample: '97.2561' Tissue used: 'full endosperm' |
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| AT1G09510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.46986' Avg. embryo expression (LCM): '1.16795' |
||||||
| AT1G09510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.95613 x 10-1 | 127 | 36 | 77.91% | 163 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '24.8311' Avg. expression score in LCM sample: '97.2561' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.84973 x 10-1 | 13 | 3 | 5 | 11 | 81.25% | 68.75% | 16 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.231731' Avg. expression score for this sample: '131.534' Avg. expression score in LCM sample: '28.2347' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.56187 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 9 | 13 | 1 | 7 | 40.91% | 87.50% | 22 | 8 | TAIR8 |
Avg. embryo expression (dissected): '189.317' Avg. embryo expression (LCM): '28.5205' |
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| AT1G09500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.81987 x 10-1 | 27 | 11 | 1 | 13 | 71.05% | 92.86% | 38 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.231731' Avg. expression score for this sample: '346.592' Avg. expression score in LCM sample: '28.2347' Tissue used: 'full endosperm' |
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| AT1G09500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.58384 x 10-1 | 12 | 5 | 70.59% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.7182 x 10-2 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 1 | 0 | 1 | 50.00% | 100.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '116.613' Avg. embryo expression (LCM): '66.4474' |
||||
| AT1G09490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.56203 x 10-1 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.67896 x 10-1 | 31 | 11 | 29 | 32 | 73.81% | 52.46% | 42 | 61 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.668406' Avg. expression score for this sample: '99.5042' Avg. expression score in LCM sample: '12.9636' Tissue used: 'full endosperm' |
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| AT1G09490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 0 | 0 | 0 | 100.00% | 4 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.668406' Avg. expression score for this sample: '42.7657' Avg. expression score in LCM sample: '12.9636' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.8453 x 10-1 | 7 | 2 | 77.78% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09483 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09483 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.540083' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G09483 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G09483 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09483 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09483 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.765415' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.63323' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '14.4501' Avg. embryo expression (LCM): '25.0292' |
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| AT1G09480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.920806' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G09480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 10 | 13 | 3 | 5 | 43.48% | 62.50% | 23 | 8 | TAIR8 |
Avg. embryo expression (dissected): '601.227' Avg. embryo expression (LCM): '718.815' |
||||
| AT1G09470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.61111 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 4 | 4 | 5 | 16 | 50.00% | 76.19% | 8 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '431.054' Avg. expression score in LCM sample: '370.784' Tissue used: 'full endosperm' |
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| AT1G09470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.20119 x 10-1 | 16 | 8 | 8 | 10 | 66.67% | 55.56% | 24 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '629.44' Avg. expression score in LCM sample: '370.784' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G09470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.46464 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.00711 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.20891 x 10-1 | 9 | 1 | 3 | 12 | 90.00% | 80.00% | 10 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.798482' Avg. expression score for this sample: '211.22' Avg. expression score in LCM sample: '284.625' Tissue used: 'full endosperm' |
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| AT1G09460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 4 | 0 | 1 | 20.00% | 100.00% | 5 | 1 | TAIR8 |
Avg. embryo expression (dissected): '383.982' Avg. embryo expression (LCM): '118.603' |
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| AT1G09460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 3 | 72.73% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.69921 x 10-1 | 1 | 5 | 1 | 4 | 16.67% | 80.00% | 6 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.798482' Avg. expression score for this sample: '731.618' Avg. expression score in LCM sample: '284.625' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09450 | Haspin | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.62137 x 10-1 | 3 | 4 | 4 | 4 | 42.86% | 50.00% | 7 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.35387' Avg. expression score in LCM sample: '6.3495' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09450 | Haspin | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.95024 x 10-1 | 9 | 9 | 50.00% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09450 | Haspin | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.77452 x 10-1 | 13 | 4 | 76.47% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09450 | Haspin | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 13 | 11 | 4 | 3 | 54.17% | 42.86% | 24 | 7 | TAIR8 |
Avg. embryo expression (dissected): '18.43' Avg. embryo expression (LCM): '22.3291' |
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| AT1G09450 | Haspin | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.64484 x 10-1 | 9 | 2 | 5 | 10 | 81.82% | 66.67% | 11 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.57392' Avg. expression score in LCM sample: '6.3495' Tissue used: 'full endosperm' |
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| AT1G09450 | Haspin | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09440 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.68474' Avg. embryo expression (LCM): '0' |
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| AT1G09440 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.54545 x 10-1 | 1 | 0 | 0 | 5 | 100.00% | 100.00% | 1 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230769' Avg. expression score for this sample: '46.157' Avg. expression score in LCM sample: '2.1018' Tissue used: 'full endosperm' |
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| AT1G09440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230769' Avg. expression score for this sample: '8.12863' Avg. expression score in LCM sample: '2.1018' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09430 | ACLA-3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.962 x 10-3 | 90 | 3 | 96.77% | 93 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09430 | ACLA-3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.8 x 10-8 | 75 | 12 | 11 | 112 | 86.21% | 91.06% | 87 | 123 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.0e-08' Avg. expression score for this sample: '159.117' Avg. expression score in LCM sample: '27.3675' Tissue used: 'full endosperm' |
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| AT1G09430 | ACLA-3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.05249 x 10-1 | 16 | 29 | 2 | 9 | 35.56% | 81.82% | 45 | 11 | TAIR8 |
Avg. embryo expression (dissected): '108.773' Avg. embryo expression (LCM): '63.9608' |
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| AT1G09430 | ACLA-3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.34052 x 10-1 | 21 | 6 | 77.78% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09430 | ACLA-3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.0 x 10-5 | 245 | 8 | 96.84% | 253 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09430 | ACLA-3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.92217 x 10-1 | 24 | 3 | 8 | 19 | 88.89% | 70.37% | 27 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.0e-08' Avg. expression score for this sample: '72.7066' Avg. expression score in LCM sample: '27.3675' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09421 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.19758 x 10-1 | 24 | 11 | 20 | 13 | 68.57% | 39.39% | 35 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.179571' Avg. expression score for this sample: '302.561' Avg. expression score in LCM sample: '37.8765' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09421 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.11494 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09421 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.15024 x 10-1 | 35 | 20 | 9 | 8 | 63.64% | 47.06% | 55 | 17 | TAIR8 |
Avg. embryo expression (dissected): '620.021' Avg. embryo expression (LCM): '258.945' |
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| AT1G09421 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09421 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.10044 x 10-1 | 16 | 19 | 10 | 30 | 45.71% | 75.00% | 35 | 40 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.179571' Avg. expression score for this sample: '239.47' Avg. expression score in LCM sample: '37.8765' Tissue used: 'full endosperm' |
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| AT1G09421 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 2 | 50.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09420 | G6PD4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.62487 x 10-1 | 40 | 11 | 78.43% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09420 | G6PD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.33 x 10-4 | 22 | 28 | 44.00% | 50 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09420 | G6PD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.96798 x 10-1 | 166 | 108 | 58 | 209 | 60.58% | 78.28% | 274 | 267 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.377584' Avg. expression score for this sample: '499.283' Avg. expression score in LCM sample: '162.03' Tissue used: 'full endosperm' |
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| AT1G09420 | G6PD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.66103 x 10-1 | 118 | 96 | 36 | 160 | 55.14% | 81.63% | 214 | 196 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.377584' Avg. expression score for this sample: '912.301' Avg. expression score in LCM sample: '162.03' Tissue used: 'pure endosperm, no chalazal' |