| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G09980 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.28366 x 10-1 | 77 | 12 | 86.52% | 89 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.64484 x 10-1 | 3 | 1 | 6 | 16 | 75.00% | 72.73% | 4 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.112563' Avg. expression score for this sample: '26.4837' Avg. expression score in LCM sample: '19.6364' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.0009 x 10-2 | 4 | 6 | 40.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09980 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.20978 x 10-1 | 24 | 16 | 2 | 1 | 60.00% | 33.33% | 40 | 3 | TAIR8 |
Avg. embryo expression (dissected): '64.8104' Avg. embryo expression (LCM): '31.9616' |
||||
| AT1G09980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.83012 x 10-1 | 26 | 5 | 10 | 29 | 83.87% | 74.36% | 31 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.112563' Avg. expression score for this sample: '33.9821' Avg. expression score in LCM sample: '19.6364' Tissue used: 'full endosperm' |
|||||
| AT1G09980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.40273 x 10-1 | 39 | 13 | 75.00% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09970 | LRR XI-23 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4 x 10-6 | 181 | 19 | 50 | 133 | 90.50% | 72.68% | 200 | 183 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.6e-06' Avg. expression score for this sample: '67.9012' Avg. expression score in LCM sample: '8.30432' Tissue used: 'full endosperm' |
||||
| AT1G09970 | LRR XI-23 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.77934 x 10-1 | 102 | 18 | 32 | 38 | 85.00% | 54.29% | 120 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.6e-06' Avg. expression score for this sample: '52.6957' Avg. expression score in LCM sample: '8.30432' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G09970 | LRR XI-23 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.99152 x 10-1 | 83 | 24 | 77.57% | 107 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09970 | LRR XI-23 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-5 | 421 | 51 | 89.19% | 472 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09970 | LRR XI-23 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.05179 x 10-1 | 37 | 20 | 8 | 4 | 64.91% | 33.33% | 57 | 12 | TAIR8 |
Avg. embryo expression (dissected): '43.5339' Avg. embryo expression (LCM): '19.7923' |
|||
| AT1G09970 | LRR XI-23 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.98646 x 10-1 | 33 | 10 | 76.74% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09960 | SUT4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.6 x 10-6 | 112 | 16 | 87.50% | 128 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09960 | SUT4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.2571 x 10-1 | 78 | 110 | 24 | 47 | 41.49% | 66.20% | 188 | 71 | TAIR8 |
Avg. embryo expression (dissected): '222.642' Avg. embryo expression (LCM): '126.352' |
|||
| AT1G09960 | SUT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.42588 x 10-1 | 270 | 160 | 89 | 296 | 62.79% | 76.88% | 430 | 385 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.238578' Avg. expression score for this sample: '264.11' Avg. expression score in LCM sample: '129.209' Tissue used: 'full endosperm' |
||||
| AT1G09960 | SUT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-11 | 205 | 25 | 89.13% | 230 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09960 | SUT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.30078 x 10-1 | 96 | 100 | 53 | 228 | 48.98% | 81.14% | 196 | 281 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.238578' Avg. expression score for this sample: '212.242' Avg. expression score in LCM sample: '129.209' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G09960 | SUT4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.2 x 10-12 | 97 | 3 | 97.00% | 100 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09950 | RAS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09950 | RAS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.49347 x 10-1 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09950 | RAS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.79688 x 10-1 | 119 | 60 | 54 | 132 | 66.48% | 70.97% | 179 | 186 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.394629' Avg. expression score for this sample: '179.832' Avg. expression score in LCM sample: '7.15788' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G09950 | RAS1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.90529 x 10-1 | 6 | 5 | 1 | 5 | 54.55% | 83.33% | 11 | 6 | TAIR8 |
Avg. embryo expression (dissected): '16.8258' Avg. embryo expression (LCM): '0' |
|||
| AT1G09950 | RAS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 32 | 14 | 69.57% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09950 | RAS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.68683 x 10-1 | 143 | 58 | 49 | 96 | 71.14% | 66.21% | 201 | 145 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.394629' Avg. expression score for this sample: '204.42' Avg. expression score in LCM sample: '7.15788' Tissue used: 'full endosperm' |
||||
| AT1G09940 | HEMA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.9 x 10-19 | 155 | 76 | 44 | 554 | 67.10% | 92.64% | 231 | 598 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.3e-16' Avg. expression score for this sample: '73.3735' Avg. expression score in LCM sample: '4.87971' Tissue used: 'full endosperm' |
||||
| AT1G09940 | HEMA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.77601 x 10-1 | 47 | 19 | 37 | 83 | 71.21% | 69.17% | 66 | 120 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.3e-16' Avg. expression score for this sample: '28.9256' Avg. expression score in LCM sample: '4.87971' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G09940 | HEMA2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 x 10-5 | 266 | 21 | 92.68% | 287 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09940 | HEMA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2 x 10-6 | 240 | 16 | 93.75% | 256 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09940 | HEMA2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.74927 x 10-1 | 64 | 12 | 84.21% | 76 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09940 | HEMA2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.89731 x 10-1 | 41 | 36 | 14 | 12 | 53.25% | 46.15% | 77 | 26 | TAIR8 |
Avg. embryo expression (dissected): '21.0738' Avg. embryo expression (LCM): '14.8694' |
|||
| AT1G09935 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G09935 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09935 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G09935 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09935 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G09935 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09932 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.04875 x 10-1 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09932 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.1832 x 10-2 | 25 | 4 | 86.21% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09932 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 0 | 4 | 0 | 100.00% | 0.00% | 8 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.98916' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09932 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 55 | 2 | 28 | 6 | 96.49% | 17.65% | 57 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '17.5932' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G09932 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.0276 x 10-2 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09932 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.2381 x 10-1 | 4 | 1 | 0 | 0 | 80.00% | 5 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.29377' Avg. embryo expression (LCM): '0' |
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| AT1G09930 | OPT2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 0 | 0 | 75.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.86444' Avg. embryo expression (LCM): '.565136' |
||||
| AT1G09930 | OPT2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09930 | OPT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.823 x 10-3 | 28 | 0 | 0 | 0 | 100.00% | 28 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.045311' Avg. expression score for this sample: '9.67922' Avg. expression score in LCM sample: '8.68647' Tissue used: 'full endosperm' |
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| AT1G09930 | OPT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 5 | 1 | 2 | 66.67% | 66.67% | 15 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.045311' Avg. expression score for this sample: '4.66952' Avg. expression score in LCM sample: '8.68647' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09930 | OPT2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.994 x 10-3 | 424 | 217 | 66.15% | 641 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09930 | OPT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.4017 x 10-2 | 211 | 74 | 74.04% | 285 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.2 x 10-5 | 250 | 34 | 88.03% | 284 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.90977 x 10-1 | 36 | 25 | 19 | 39 | 59.02% | 67.24% | 61 | 58 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002577' Avg. expression score for this sample: '88.2642' Avg. expression score in LCM sample: '35.0986' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G09920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.1213 x 10-2 | 213 | 48 | 81.61% | 261 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.2 x 10-5 | 108 | 22 | 43 | 162 | 83.08% | 79.02% | 130 | 205 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002577' Avg. expression score for this sample: '182.517' Avg. expression score in LCM sample: '35.0986' Tissue used: 'full endosperm' |
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| AT1G09920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.022 x 10-3 | 35 | 2 | 94.59% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.91701 x 10-1 | 24 | 35 | 3 | 5 | 40.68% | 62.50% | 59 | 8 | TAIR8 |
Avg. embryo expression (dissected): '69.6184' Avg. embryo expression (LCM): '71.722' |
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| AT1G09910 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.7063 x 10-2 | 47 | 25 | 12 | 14 | 65.28% | 53.85% | 72 | 26 | TAIR8 |
Avg. embryo expression (dissected): '35.1077' Avg. embryo expression (LCM): '22.6431' |
||||
| AT1G09910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.64823 x 10-1 | 62 | 13 | 82.67% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.0 x 10-5 | 369 | 65 | 129 | 236 | 85.02% | 64.66% | 434 | 365 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000046' Avg. expression score for this sample: '119.292' Avg. expression score in LCM sample: '35.7747' Tissue used: 'full endosperm' |
|||||
| AT1G09910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.3 x 10-14 | 247 | 15 | 94.27% | 262 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09910 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 680 | 15 | 97.84% | 695 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.46283 x 10-1 | 100 | 11 | 60 | 80 | 90.09% | 57.14% | 111 | 140 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000046' Avg. expression score for this sample: '56.499' Avg. expression score in LCM sample: '35.7747' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.10341 x 10-1 | 67 | 17 | 33 | 18 | 79.76% | 35.29% | 84 | 51 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.659106' Avg. expression score for this sample: '26.7237' Avg. expression score in LCM sample: '15.5504' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G09900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.6101 x 10-2 | 68 | 55 | 55.28% | 123 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09900 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.3 x 10-23 | 300 | 19 | 94.04% | 319 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.28265 x 10-1 | 117 | 13 | 81 | 65 | 90.00% | 44.52% | 130 | 146 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.659106' Avg. expression score for this sample: '36.6743' Avg. expression score in LCM sample: '15.5504' Tissue used: 'full endosperm' |
|||||
| AT1G09900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.76341 x 10-1 | 8 | 6 | 57.14% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09900 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.146 x 10-3 | 264 | 137 | 56 | 18 | 65.84% | 24.32% | 401 | 74 | TAIR8 |
Avg. embryo expression (dissected): '126.398' Avg. embryo expression (LCM): '148.945' |
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| AT1G09890 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '.524621' Avg. embryo expression (LCM): '0' |
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| AT1G09890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.245283' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G09890 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 371 | 208 | 64.08% | 579 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09880 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.50471 x 10-1 | 303 | 303 | 50.00% | 606 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 2 | 100.00% | 100.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.05672' Avg. expression score in LCM sample: '.778989' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 2 | 0 | 100.00% | 0.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.33493' Avg. expression score in LCM sample: '.778989' Tissue used: 'full endosperm' |
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| AT1G09880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09880 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.96004 x 10-1 | 3 | 9 | 3 | 2 | 25.00% | 40.00% | 12 | 5 | TAIR8 |
Avg. embryo expression (dissected): '10.4433' Avg. embryo expression (LCM): '3.99363' |
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| AT1G09870 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.75242 x 10-1 | 44 | 24 | 22 | 10 | 64.71% | 31.25% | 68 | 32 | TAIR8 |
Avg. embryo expression (dissected): '332.643' Avg. embryo expression (LCM): '256.697' |
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| AT1G09870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.43892 x 10-1 | 25 | 12 | 67.57% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.573 x 10-3 | 120 | 20 | 51 | 127 | 85.71% | 71.35% | 140 | 178 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.026808' Avg. expression score for this sample: '235.154' Avg. expression score in LCM sample: '177.286' Tissue used: 'full endosperm' |
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| AT1G09870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.07934 x 10-1 | 56 | 19 | 34 | 41 | 74.67% | 54.67% | 75 | 75 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.026808' Avg. expression score for this sample: '278.295' Avg. expression score in LCM sample: '177.286' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.5129 | 223 | 90 | 71.25% | 313 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09870 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 x 10-11 | 379 | 38 | 90.89% | 417 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09860 | PUP16 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09860 | PUP16 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.1' Avg. expression score for this sample: '.60442' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09860 | PUP16 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09860 | PUP16 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.54545 x 10-1 | 6 | 0 | 0 | 0 | 100.00% | 6 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.1' Avg. expression score for this sample: '1.25936' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G09860 | PUP16 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G09860 | PUP16 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.449066' Avg. embryo expression (LCM): '0' |
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| AT1G09850 | XBCP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 4 | 0 | 4 | 0.00% | 100.00% | 4 | 4 | TAIR8 |
Avg. embryo expression (dissected): '3.42354' Avg. embryo expression (LCM): '0' |
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| AT1G09850 | XBCP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09850 | XBCP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.0951 x 10-1 | 12 | 6 | 2 | 20 | 66.67% | 90.91% | 18 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.026472' Avg. expression score for this sample: '7.05989' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G09850 | XBCP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 80 | 13 | 86.02% | 93 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09850 | XBCP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9651 x 10-2 | 73 | 2 | 97.33% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09850 | XBCP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.8404 x 10-2 | 3 | 0 | 0 | 14 | 100.00% | 100.00% | 3 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.026472' Avg. expression score for this sample: '3.49703' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09840 | SK41 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.28268 x 10-1 | 164 | 86 | 74 | 137 | 65.60% | 64.93% | 250 | 211 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.009587' Avg. expression score for this sample: '95.1514' Avg. expression score in LCM sample: '67.8015' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09840 | SK41 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.16 x 10-4 | 395 | 98 | 80.12% | 493 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09840 | SK41 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 676 | 41 | 94.28% | 717 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G09840 | SK41 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.66 x 10-4 | 314 | 84 | 114 | 284 | 78.89% | 71.36% | 398 | 398 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.009587' Avg. expression score for this sample: '151.764' Avg. expression score in LCM sample: '67.8015' Tissue used: 'full endosperm' |