| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G10150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G10150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G10150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '123.557' Avg. expression score in LCM sample: '35.3044' Tissue used: 'full endosperm' |
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| AT1G10150 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '67.4471' Avg. embryo expression (LCM): '37.8892' |
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| AT1G10140 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.997902' Avg. embryo expression (LCM): '0' |
||||||
| AT1G10140 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G10140 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.48286' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT1G10140 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10140 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G10140 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.7662' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10130 | ECA3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.14701 x 10-1 | 53 | 27 | 37 | 80 | 66.25% | 68.38% | 80 | 117 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.058219' Avg. expression score for this sample: '60.7784' Avg. expression score in LCM sample: '40.9631' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G10130 | ECA3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.52 x 10-4 | 97 | 13 | 88.18% | 110 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10130 | ECA3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.5737 x 10-2 | 100 | 35 | 33 | 116 | 74.07% | 77.85% | 135 | 149 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.058219' Avg. expression score for this sample: '90.4912' Avg. expression score in LCM sample: '40.9631' Tissue used: 'full endosperm' |
||||
| AT1G10130 | ECA3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.92288 x 10-1 | 36 | 41 | 12 | 20 | 46.75% | 62.50% | 77 | 32 | TAIR8 |
Avg. embryo expression (dissected): '56.837' Avg. embryo expression (LCM): '24.0622' |
|||
| AT1G10130 | ECA3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.10132 x 10-1 | 27 | 12 | 69.23% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10130 | ECA3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.8 x 10-9 | 173 | 14 | 92.51% | 187 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10120 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.2 x 10-8 | 205 | 42 | 83.00% | 247 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10120 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.3 x 10-13 | 139 | 11 | 92.67% | 150 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10120 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.1646 x 10-2 | 132 | 124 | 91 | 193 | 51.56% | 67.96% | 256 | 284 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.970526' Avg. expression score for this sample: '101.86' Avg. expression score in LCM sample: '36.0246' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G10120 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.02895 x 10-1 | 49 | 26 | 65.33% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10120 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.00378 x 10-1 | 301 | 175 | 158 | 475 | 63.24% | 75.04% | 476 | 633 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.970526' Avg. expression score for this sample: '143.538' Avg. expression score in LCM sample: '36.0246' Tissue used: 'full endosperm' |
|||||
| AT1G10120 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.30658 x 10-1 | 132 | 151 | 32 | 75 | 46.64% | 70.09% | 283 | 107 | TAIR8 |
Avg. embryo expression (dissected): '122.016' Avg. embryo expression (LCM): '67.4647' |
||||
| AT1G10110 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.04 | 3 | 78 | 0 | 42 | 3.70% | 100.00% | 81 | 42 | TAIR8 |
Avg. embryo expression (dissected): '57.8557' Avg. embryo expression (LCM): '67.9042' |
||||
| AT1G10110 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.4 x 10-9 | 83 | 0 | 100.00% | 83 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10110 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2 x 10-6 | 18 | 53 | 3 | 260 | 25.35% | 98.86% | 71 | 263 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000568' Avg. expression score for this sample: '67.0036' Avg. expression score in LCM sample: '35.9217' Tissue used: 'full endosperm' |
|||||
| AT1G10110 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.6 x 10-11 | 95 | 95 | 50.00% | 190 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10110 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.60849 x 10-1 | 0 | 48 | 2 | 77 | 0.00% | 97.47% | 48 | 79 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000568' Avg. expression score for this sample: '36.8223' Avg. expression score in LCM sample: '35.9217' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G10110 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.6 x 10-9 | 449 | 44 | 91.08% | 493 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10100 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10100 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.20587' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10100 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.819' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT1G10100 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '5.46425' Avg. embryo expression (LCM): '7.77376' |
||||||
| AT1G10100 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G10100 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10095 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.58611 x 10-1 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10095 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 0 | 1 | 50.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.19935' Avg. expression score for this sample: '1.55523' Avg. expression score in LCM sample: '1.96952' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10095 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.33229 x 10-1 | 15 | 1 | 93.75% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10095 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.85185 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10095 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.65322 x 10-1 | 14 | 2 | 1 | 6 | 87.50% | 85.71% | 16 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.19935' Avg. expression score for this sample: '3.7477' Avg. expression score in LCM sample: '1.96952' Tissue used: 'full endosperm' |
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| AT1G10095 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.00323 x 10-1 | 6 | 2 | 1 | 2 | 75.00% | 66.67% | 8 | 3 | TAIR8 |
Avg. embryo expression (dissected): '3.9285' Avg. embryo expression (LCM): '5.03599' |
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| AT1G10090 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.5174 x 10-2 | 34 | 6 | 14 | 5 | 85.00% | 26.32% | 40 | 19 | TAIR8 |
Avg. embryo expression (dissected): '11.2139' Avg. embryo expression (LCM): '3.89316' |
||||
| AT1G10090 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.2 x 10-4 | 8 | 15 | 34.78% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10090 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.76957 x 10-1 | 63 | 3 | 41 | 56 | 95.45% | 57.73% | 66 | 97 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.197041' Avg. expression score for this sample: '12.6117' Avg. expression score in LCM sample: '14.6979' Tissue used: 'full endosperm' |
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| AT1G10090 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.91538 x 10-1 | 102 | 31 | 76.69% | 133 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10090 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.4861 x 10-2 | 250 | 64 | 79.62% | 314 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10090 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.01977 x 10-1 | 36 | 2 | 20 | 19 | 94.74% | 48.72% | 38 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.197041' Avg. expression score for this sample: '9.27068' Avg. expression score in LCM sample: '14.6979' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10070 | BCAT-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.4472 x 10-1 | 10 | 0 | 2 | 1 | 100.00% | 33.33% | 10 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004989' Avg. expression score for this sample: '2.68101' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10070 | BCAT-2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.64284 x 10-1 | 36 | 7 | 83.72% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10070 | BCAT-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.234 x 10-2 | 22 | 3 | 2 | 21 | 88.00% | 91.30% | 25 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004989' Avg. expression score for this sample: '7.96709' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G10070 | BCAT-2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.61215 x 10-1 | 5 | 15 | 0 | 4 | 25.00% | 100.00% | 20 | 4 | TAIR8 |
Avg. embryo expression (dissected): '5.53752' Avg. embryo expression (LCM): '0' |
|||
| AT1G10070 | BCAT-2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.82482 x 10-1 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10070 | BCAT-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.0261 x 10-2 | 184 | 9 | 95.34% | 193 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10060 | BCAT-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 24 | 0 | 100.00% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10060 | BCAT-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10060 | BCAT-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001378' Avg. expression score for this sample: '17.275' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10060 | BCAT-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10060 | BCAT-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.336 x 10-3 | 19 | 0 | 1 | 16 | 100.00% | 94.12% | 19 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001378' Avg. expression score for this sample: '158.562' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G10060 | BCAT-1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 2 | 0 | 1 | 0.00% | 100.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '76.8027' Avg. embryo expression (LCM): '87.4328' |
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| AT1G10050 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.2463 x 10-2 | 69 | 52 | 8 | 27 | 57.02% | 77.14% | 121 | 35 | TAIR8 |
Avg. embryo expression (dissected): '53.8078' Avg. embryo expression (LCM): '30.7936' |
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| AT1G10050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.81238 x 10-1 | 13 | 5 | 72.22% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.48 x 10-4 | 95 | 14 | 27 | 92 | 87.16% | 77.31% | 109 | 119 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004892' Avg. expression score for this sample: '39.2178' Avg. expression score in LCM sample: '24.6337' Tissue used: 'full endosperm' |
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| AT1G10050 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.35936 x 10-1 | 292 | 96 | 75.26% | 388 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.58106 x 10-1 | 101 | 31 | 37 | 48 | 76.52% | 56.47% | 132 | 85 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004892' Avg. expression score for this sample: '40.3283' Avg. expression score in LCM sample: '24.6337' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.0606 x 10-2 | 194 | 90 | 68.31% | 284 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '8.46286' Avg. expression score in LCM sample: '1.74905' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '12.7531' Avg. expression score in LCM sample: '1.74905' Tissue used: 'full endosperm' |
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| AT1G10040 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '27.5335' Avg. embryo expression (LCM): '22.4422' |
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| AT1G10040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G10040 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10030 | ERG28 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.72005 x 10-1 | 11 | 5 | 68.75% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10030 | ERG28 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 1 | 4 | 3 | 90.91% | 42.86% | 11 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.843829' Avg. expression score for this sample: '1105.18' Avg. expression score in LCM sample: '776.608' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10030 | ERG28 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 5 | 64.29% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10030 | ERG28 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.45141 x 10-1 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10030 | ERG28 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.37136 x 10-1 | 9 | 3 | 13 | 13 | 75.00% | 50.00% | 12 | 26 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.843829' Avg. expression score for this sample: '885.777' Avg. expression score in LCM sample: '776.608' Tissue used: 'full endosperm' |
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| AT1G10030 | ERG28 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 7 | 1 | 0 | 53.33% | 0.00% | 15 | 1 | TAIR8 |
Avg. embryo expression (dissected): '1334.82' Avg. embryo expression (LCM): '1208.34' |
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| AT1G10020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.9602 x 10-2 | 22 | 6 | 1 | 1 | 78.57% | 50.00% | 28 | 2 | TAIR8 |
Avg. embryo expression (dissected): '163.551' Avg. embryo expression (LCM): '57.895' |
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| AT1G10020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.9934 x 10-2 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.97319 x 10-1 | 18 | 5 | 8 | 26 | 78.26% | 76.47% | 23 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.095216' Avg. expression score for this sample: '63.8125' Avg. expression score in LCM sample: '33.5112' Tissue used: 'full endosperm' |
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| AT1G10020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.8182 x 10-2 | 13 | 0 | 100.00% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.74557 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G10020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.366 | 18 | 4 | 7 | 20 | 81.82% | 74.07% | 22 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.095216' Avg. expression score for this sample: '145.733' Avg. expression score in LCM sample: '33.5112' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10010 | AAP8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 3 | 0 | 1 | 40.00% | 100.00% | 5 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.240482' Avg. expression score for this sample: '10.8566' Avg. expression score in LCM sample: '16.5352' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10010 | AAP8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.479 x 10-3 | 119 | 32 | 78.81% | 151 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10010 | AAP8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.2381 x 10-1 | 0 | 3 | 1 | 1 | 0.00% | 50.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.240482' Avg. expression score for this sample: '10.154' Avg. expression score in LCM sample: '16.5352' Tissue used: 'full endosperm' |
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| AT1G10010 | AAP8 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.04703' Avg. embryo expression (LCM): '0' |
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| AT1G10010 | AAP8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.92308 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10010 | AAP8 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6361 x 10-2 | 148 | 56 | 72.55% | 204 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G10000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G10000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G10000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.285953' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G10000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G10000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.595809' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G10000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.13584' Avg. embryo expression (LCM): '1.38144' |
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| AT1G09995 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.88366' Avg. embryo expression (LCM): '3.47873' |
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| AT1G09995 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09995 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.8886' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G09995 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G09995 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '3.21776' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G09995 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |