| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G12310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12310 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.14286 x 10-1 | 3 | 0 | 0 | 1 | 100.00% | 100.00% | 3 | 1 | TAIR8 |
Avg. embryo expression (dissected): '192.856' Avg. embryo expression (LCM): '314.316' |
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| AT1G12310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.16426 x 10-1 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.31094 x 10-1 | 5 | 3 | 2 | 10 | 62.50% | 83.33% | 8 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '243.513' Avg. expression score in LCM sample: '123.727' Tissue used: 'full endosperm' |
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| AT1G12300 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.599 x 10-3 | 58 | 9 | 86.57% | 67 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12300 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.69199 x 10-1 | 33 | 22 | 18 | 35 | 60.00% | 66.04% | 55 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.732355' Avg. expression score for this sample: '32.6217' Avg. expression score in LCM sample: '12.4932' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G12300 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.074 x 10-3 | 129 | 29 | 81.65% | 158 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12300 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.91024 x 10-1 | 61 | 51 | 12 | 22 | 54.46% | 64.71% | 112 | 34 | TAIR8 |
Avg. embryo expression (dissected): '58.9964' Avg. embryo expression (LCM): '51.3395' |
||||
| AT1G12300 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.91853 x 10-1 | 55 | 30 | 29 | 89 | 64.71% | 75.42% | 85 | 118 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.732355' Avg. expression score for this sample: '43.1708' Avg. expression score in LCM sample: '12.4932' Tissue used: 'full endosperm' |
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| AT1G12300 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.359 x 10-3 | 25 | 1 | 96.15% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12294 | MIR472A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12294 | MIR472A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.47689' Avg. embryo expression (LCM): '0' |
|||||
| AT1G12294 | MIR472A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.25173' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G12294 | MIR472A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12294 | MIR472A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12294 | MIR472A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.65522' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G12290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 13 | 8 | 10 | 20 | 61.90% | 66.67% | 21 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '34.4162' Avg. expression score in LCM sample: '18.828' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G12290 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.342 x 10-3 | 67 | 11 | 85.90% | 78 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.75127 x 10-1 | 38 | 16 | 13 | 25 | 70.37% | 65.79% | 54 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '40.0215' Avg. expression score in LCM sample: '18.828' Tissue used: 'full endosperm' |
|||||
| AT1G12290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.06009 x 10-1 | 11 | 1 | 91.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12290 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.02826 x 10-1 | 16 | 7 | 3 | 5 | 69.57% | 62.50% | 23 | 8 | TAIR8 |
Avg. embryo expression (dissected): '37.6701' Avg. embryo expression (LCM): '17.9839' |
||||
| AT1G12290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.884 x 10-3 | 24 | 2 | 92.31% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12280 | SUMM2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12280 | SUMM2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.45641 x 10-1 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12280 | SUMM2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.10526 x 10-1 | 5 | 0 | 0 | 5 | 100.00% | 100.00% | 5 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.03263' Avg. expression score for this sample: '9.44467' Avg. expression score in LCM sample: '3.83616' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G12280 | SUMM2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 3 | 0 | 2 | 0.00% | 100.00% | 3 | 2 | TAIR8 |
Avg. embryo expression (dissected): '10.9417' Avg. embryo expression (LCM): '9.35614' |
|||
| AT1G12280 | SUMM2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.65322 x 10-1 | 10 | 3 | 0 | 10 | 76.92% | 100.00% | 13 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.03263' Avg. expression score for this sample: '11.8773' Avg. expression score in LCM sample: '3.83616' Tissue used: 'full endosperm' |
||||
| AT1G12280 | SUMM2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12270 | Hop1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12270 | Hop1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '496.356' Avg. embryo expression (LCM): '775.367' |
|||||
| AT1G12270 | Hop1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '307.663' Avg. expression score in LCM sample: '193.748' Tissue used: 'full endosperm' |
||||||
| AT1G12270 | Hop1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12270 | Hop1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '183.692' Avg. expression score in LCM sample: '193.748' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G12270 | Hop1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12260 | NAC007 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12260 | NAC007 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 1 | 50.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.099533' Avg. expression score for this sample: '.91957' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G12260 | NAC007 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.9779 x 10-2 | 2 | 8 | 0 | 0 | 20.00% | 10 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.099533' Avg. expression score for this sample: '2.30645' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G12260 | NAC007 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12260 | NAC007 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.58332' Avg. embryo expression (LCM): '.891659' |
||||
| AT1G12260 | NAC007 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G12250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '54.7299' Avg. expression score in LCM sample: '15.4916' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G12250 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12250 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.28571 x 10-1 | 1 | 0 | 0 | 2 | 100.00% | 100.00% | 1 | 2 | TAIR8 |
Avg. embryo expression (dissected): '89.8441' Avg. embryo expression (LCM): '16.8411' |
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| AT1G12250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '22.2445' Avg. expression score in LCM sample: '15.4916' Tissue used: 'full endosperm' |
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| AT1G12250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.25 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12244 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12244 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 4 | 0 | 0 | 33.33% | 6 | 0 | TAIR8 |
Avg. embryo expression (dissected): '31.2155' Avg. embryo expression (LCM): '38.5172' |
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| AT1G12244 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.82043 x 10-1 | 5 | 1 | 0 | 4 | 83.33% | 100.00% | 6 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.582043' Avg. expression score for this sample: '34.4661' Avg. expression score in LCM sample: '7.51063' Tissue used: 'full endosperm' |
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| AT1G12244 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12244 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12244 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.582043' Avg. expression score for this sample: '13.759' Avg. expression score in LCM sample: '7.51063' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G12240 | ATBETAFRUCT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.1247 x 10-1 | 202 | 53 | 87 | 150 | 79.22% | 63.29% | 255 | 237 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.829013' Avg. expression score for this sample: '79.9608' Avg. expression score in LCM sample: '135.603' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G12240 | ATBETAFRUCT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.7 x 10-10 | 172 | 24 | 87.76% | 196 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12240 | ATBETAFRUCT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.427 x 10-2 | 58 | 32 | 89 | 97 | 64.44% | 52.15% | 90 | 186 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.829013' Avg. expression score for this sample: '30.8811' Avg. expression score in LCM sample: '135.603' Tissue used: 'full endosperm' |
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| AT1G12240 | ATBETAFRUCT4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.41999 x 10-1 | 35 | 10 | 77.78% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12240 | ATBETAFRUCT4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.80129 x 10-1 | 11 | 7 | 1 | 4 | 61.11% | 80.00% | 18 | 5 | TAIR8 |
Avg. embryo expression (dissected): '4.95837' Avg. embryo expression (LCM): '1.69541' |
|||
| AT1G12240 | ATBETAFRUCT4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.41537 x 10-1 | 118 | 70 | 62.77% | 188 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12230 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.189 x 10-3 | 137 | 37 | 78.74% | 174 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12230 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.3276 x 10-2 | 261 | 97 | 72.91% | 358 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12230 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.99532 x 10-1 | 339 | 217 | 165 | 464 | 60.97% | 73.77% | 556 | 629 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.11391' Avg. expression score for this sample: '328.421' Avg. expression score in LCM sample: '113.571' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G12230 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.58983 x 10-1 | 554 | 681 | 156 | 217 | 44.86% | 58.18% | 1235 | 373 | TAIR8 |
Avg. embryo expression (dissected): '636.849' Avg. embryo expression (LCM): '252.804' |
||||
| AT1G12230 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.24199 x 10-1 | 530 | 432 | 293 | 1069 | 55.09% | 78.49% | 962 | 1362 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.11391' Avg. expression score for this sample: '397.397' Avg. expression score in LCM sample: '113.571' Tissue used: 'full endosperm' |
|||||
| AT1G12230 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.73767 x 10-1 | 131 | 62 | 67.88% | 193 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12220 | RPS5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12220 | RPS5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.76045' Avg. embryo expression (LCM): '4.35783' |
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| AT1G12220 | RPS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.64636' Avg. expression score in LCM sample: '1.52858' Tissue used: 'full endosperm' |
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| AT1G12220 | RPS5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12220 | RPS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.49545' Avg. expression score in LCM sample: '1.52858' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G12220 | RPS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12211 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G12211 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G12211 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.4591' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G12211 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G12211 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '5.06111' |
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| AT1G12211 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G12210 | RFL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.4438 x 10-1 | 53 | 12 | 81.54% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12210 | RFL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.4223 x 10-1 | 20 | 0 | 16 | 4 | 100.00% | 20.00% | 20 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.152597' Avg. expression score for this sample: '5.93147' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G12210 | RFL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-7 | 347 | 36 | 90.60% | 383 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12210 | RFL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.57149 x 10-1 | 70 | 31 | 18 | 1 | 69.31% | 5.26% | 101 | 19 | TAIR8 |
Avg. embryo expression (dissected): '21.1279' Avg. embryo expression (LCM): '29.2992' |
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| AT1G12210 | RFL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.9122 x 10-2 | 106 | 15 | 21 | 15 | 87.60% | 41.67% | 121 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.152597' Avg. expression score for this sample: '13.5428' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G12210 | RFL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.49575 x 10-1 | 9 | 4 | 69.23% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12200 | FMO | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.8574 x 10-2 | 3 | 6 | 33.33% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12200 | FMO | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '34.8656' Avg. embryo expression (LCM): '8.23843' |
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| AT1G12200 | FMO | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.67763 x 10-1 | 18 | 21 | 15 | 31 | 46.15% | 67.39% | 39 | 46 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.684869' Avg. expression score for this sample: '167.753' Avg. expression score in LCM sample: '127.005' Tissue used: 'full endosperm' |
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| AT1G12200 | FMO | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.26 x 10-4 | 22 | 0 | 100.00% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12200 | FMO | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.8 x 10-11 | 71 | 0 | 100.00% | 71 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G12200 | FMO | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.27865 x 10-1 | 21 | 3 | 5 | 6 | 87.50% | 54.55% | 24 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.684869' Avg. expression score for this sample: '217.947' Avg. expression score in LCM sample: '127.005' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G12190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '1.30811' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G12190 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 157 | 26 | 85.79% | 183 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '1.30811' Tissue used: 'full endosperm' |
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| AT1G12190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G12190 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G12190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 103 | 144 | 41.70% | 247 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.33333 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12180 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 34 | 0 | 100.00% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G12180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.839327' Avg. expression score in LCM sample: '9.62713' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G12180 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G12180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.36894' Avg. expression score in LCM sample: '9.62713' Tissue used: 'full endosperm' |
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| AT1G12180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |