| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G43890 | YUC5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43890 | YUC5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43880 | TRM21 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.9213 x 10-2 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43880 | TRM21 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.14685 x 10-1 | 1 | 4 | 2 | 1 | 20.00% | 33.33% | 5 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.472455' Avg. expression score for this sample: '76.3254' Avg. expression score in LCM sample: '10.7442' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G43880 | TRM21 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 7 | 6 | 4 | 12 | 53.85% | 75.00% | 13 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.472455' Avg. expression score for this sample: '240.912' Avg. expression score in LCM sample: '10.7442' Tissue used: 'full endosperm' |
||||
| AT5G43880 | TRM21 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 2 | 1 | 0 | 60.00% | 0.00% | 5 | 1 | TAIR8 |
Avg. embryo expression (dissected): '138.409' Avg. embryo expression (LCM): '91.3636' |
|||
| AT5G43880 | TRM21 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43880 | TRM21 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.7864 x 10-2 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43870 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.54057 x 10-1 | 20 | 1 | 95.24% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 0 | 4 | 3 | 100.00% | 42.86% | 5 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034565' Avg. expression score for this sample: '8.73206' Avg. expression score in LCM sample: '6.45238' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G43870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.406 x 10-3 | 17 | 1 | 0 | 11 | 94.44% | 100.00% | 18 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034565' Avg. expression score for this sample: '36.6289' Avg. expression score in LCM sample: '6.45238' Tissue used: 'full endosperm' |
|||||
| AT5G43870 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 6 | 1 | 2 | 40.00% | 66.67% | 10 | 3 | TAIR8 |
Avg. embryo expression (dissected): '11.7821' Avg. embryo expression (LCM): '11.8051' |
||||
| AT5G43870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 13 | 1 | 92.86% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43860 | CLH2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 448 | 9 | 98.03% | 457 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43860 | CLH2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.1703 x 10-2 | 132 | 4 | 101 | 6 | 97.06% | 5.61% | 136 | 107 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.174908' Avg. expression score for this sample: '83.0502' Avg. expression score in LCM sample: '45.7252' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G43860 | CLH2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.28506 x 10-1 | 533 | 17 | 294 | 65 | 96.91% | 18.11% | 550 | 359 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.174908' Avg. expression score for this sample: '247.306' Avg. expression score in LCM sample: '45.7252' Tissue used: 'full endosperm' |
||||
| AT5G43860 | CLH2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.0 x 10-6 | 127 | 9 | 38 | 2 | 93.38% | 5.00% | 136 | 40 | TAIR8 |
Avg. embryo expression (dissected): '86.0884' Avg. embryo expression (LCM): '39.0697' |
|||
| AT5G43860 | CLH2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.1 x 10-10 | 6 | 36 | 14.29% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43860 | CLH2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.2 x 10-5 | 213 | 198 | 51.82% | 411 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43850 | ARD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.5 x 10-9 | 70 | 2 | 97.22% | 72 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43850 | ARD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.2008 | 41 | 12 | 33 | 19 | 77.36% | 36.54% | 53 | 52 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.761081' Avg. expression score for this sample: '97.335' Avg. expression score in LCM sample: '56.6752' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G43850 | ARD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.66758 x 10-1 | 42 | 12 | 19 | 38 | 77.78% | 66.67% | 54 | 57 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.761081' Avg. expression score for this sample: '58.7124' Avg. expression score in LCM sample: '56.6752' Tissue used: 'full endosperm' |
||||
| AT5G43850 | ARD4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.69982 x 10-1 | 26 | 10 | 14 | 5 | 72.22% | 26.32% | 36 | 19 | TAIR8 |
Avg. embryo expression (dissected): '84.6903' Avg. embryo expression (LCM): '29.0605' |
|||
| AT5G43850 | ARD4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.25634 x 10-1 | 21 | 5 | 80.77% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43850 | ARD4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.52 x 10-3 | 46 | 7 | 86.79% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43840 | HSFA6A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.34274 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43840 | HSFA6A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 6 | 1 | 13 | 14.29% | 92.86% | 7 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.49265' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G43840 | HSFA6A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 4 | 4 | 0 | 1 | 50.00% | 100.00% | 8 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.47898' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT5G43840 | HSFA6A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 7 | 7 | 2 | 3 | 50.00% | 60.00% | 14 | 5 | TAIR8 |
Avg. embryo expression (dissected): '7.8222' Avg. embryo expression (LCM): '0' |
|||
| AT5G43840 | HSFA6A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43840 | HSFA6A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.12107 x 10-1 | 25 | 11 | 69.44% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43830 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 95 | 41 | 69.85% | 136 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 116 | 65 | 67 | 147 | 64.09% | 68.69% | 181 | 214 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.216325' Avg. expression score for this sample: '2716.41' Avg. expression score in LCM sample: '1378.86' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G43830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.7573 x 10-2 | 99 | 62 | 48 | 193 | 61.49% | 80.08% | 161 | 241 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.216325' Avg. expression score for this sample: '1056.58' Avg. expression score in LCM sample: '1378.86' Tissue used: 'full endosperm' |
|||||
| AT5G43830 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 49 | 53 | 6 | 9 | 48.04% | 60.00% | 102 | 15 | TAIR8 |
Avg. embryo expression (dissected): '908.651' Avg. embryo expression (LCM): '471.951' |
||||
| AT5G43830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.98975 x 10-1 | 54 | 25 | 68.35% | 79 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.64 x 10-4 | 190 | 45 | 80.85% | 235 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43820 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.3 x 10-12 | 124 | 3 | 97.64% | 127 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.64087 x 10-1 | 12 | 7 | 11 | 16 | 63.16% | 59.26% | 19 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '51.8062' Avg. expression score in LCM sample: '46.901' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G43820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.61408 x 10-1 | 34 | 12 | 20 | 41 | 73.91% | 67.21% | 46 | 61 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '84.6568' Avg. expression score in LCM sample: '46.901' Tissue used: 'full endosperm' |
|||||
| AT5G43820 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.11838 x 10-1 | 23 | 15 | 4 | 5 | 60.53% | 55.56% | 38 | 9 | TAIR8 |
Avg. embryo expression (dissected): '96.3841' Avg. embryo expression (LCM): '85.6997' |
||||
| AT5G43820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.74807 x 10-1 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.195 x 10-3 | 45 | 7 | 86.54% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43810 | AGO10 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.88088 x 10-1 | 13 | 5 | 72.22% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43810 | AGO10 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.40482 x 10-1 | 15 | 5 | 15 | 19 | 75.00% | 55.88% | 20 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '135.794' Avg. expression score in LCM sample: '98.5789' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G43810 | AGO10 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 8 | 7 | 10 | 28 | 53.33% | 73.68% | 15 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '156.777' Avg. expression score in LCM sample: '98.5789' Tissue used: 'full endosperm' |
||||
| AT5G43810 | AGO10 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.00481 x 10-1 | 14 | 8 | 8 | 10 | 63.64% | 55.56% | 22 | 18 | TAIR8 |
Avg. embryo expression (dissected): '227.241' Avg. embryo expression (LCM): '234.481' |
|||
| AT5G43810 | AGO10 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43810 | AGO10 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43790 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.8981 x 10-2 | 40 | 2 | 95.24% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.13982 x 10-1 | 5 | 1 | 3 | 10 | 83.33% | 76.92% | 6 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.088316' Avg. expression score for this sample: '37.5212' Avg. expression score in LCM sample: '18.9456' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G43790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.24321 x 10-1 | 39 | 6 | 8 | 13 | 86.67% | 61.90% | 45 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.088316' Avg. expression score for this sample: '57.1904' Avg. expression score in LCM sample: '18.9456' Tissue used: 'full endosperm' |
|||||
| AT5G43790 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.23107 x 10-1 | 8 | 4 | 3 | 4 | 66.67% | 57.14% | 12 | 7 | TAIR8 |
Avg. embryo expression (dissected): '75.0635' Avg. embryo expression (LCM): '47.71' |
||||
| AT5G43790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.78646 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.22 x 10-4 | 37 | 38 | 49.33% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43780 | APS4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.79494 x 10-1 | 14 | 4 | 77.78% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43780 | APS4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.28308 x 10-1 | 3 | 5 | 2 | 3 | 37.50% | 60.00% | 8 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.480733' Avg. expression score for this sample: '28.1557' Avg. expression score in LCM sample: '22.5172' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G43780 | APS4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.43829 x 10-1 | 13 | 11 | 10 | 22 | 54.17% | 68.75% | 24 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.480733' Avg. expression score for this sample: '38.5653' Avg. expression score in LCM sample: '22.5172' Tissue used: 'full endosperm' |
||||
| AT5G43780 | APS4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 6 | 2 | 2 | 57.14% | 50.00% | 14 | 4 | TAIR8 |
Avg. embryo expression (dissected): '58.1461' Avg. embryo expression (LCM): '32.5644' |
|||
| AT5G43780 | APS4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43780 | APS4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.919 x 10-2 | 44 | 11 | 80.00% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43770 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G43770 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.14834' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G43770 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4.64743' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G43770 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.67262' Avg. embryo expression (LCM): '0' |
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| AT5G43770 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G43770 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G43760 | KCS20 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.00925 x 10-1 | 274 | 59 | 82.28% | 333 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43760 | KCS20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.1962 x 10-2 | 27 | 38 | 12 | 24 | 41.54% | 66.67% | 65 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.5e-08' Avg. expression score for this sample: '28.7369' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G43760 | KCS20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.5 x 10-14 | 23 | 16 | 76 | 494 | 58.97% | 86.67% | 39 | 570 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.5e-08' Avg. expression score for this sample: '98.2965' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G43760 | KCS20 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.4688 x 10-2 | 414 | 567 | 113 | 152 | 42.20% | 57.36% | 981 | 265 | TAIR8 |
Avg. embryo expression (dissected): '506.207' Avg. embryo expression (LCM): '253.357' |
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| AT5G43760 | KCS20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 15 | 4 | 78.95% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43760 | KCS20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.7 x 10-10 | 317 | 20 | 94.07% | 337 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43755 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G43755 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.971268' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G43755 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.316532' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G43755 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.81984' Avg. embryo expression (LCM): '0' |
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| AT5G43755 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G43755 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G43750 | PnsB5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43750 | PnsB5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 1 | 5 | 0 | 91.67% | 0.00% | 12 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.331878' Avg. expression score for this sample: '21.6563' Avg. expression score in LCM sample: '55.661' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G43750 | PnsB5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.81141 x 10-1 | 5 | 0 | 11 | 2 | 100.00% | 15.38% | 5 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.331878' Avg. expression score for this sample: '11.2865' Avg. expression score in LCM sample: '55.661' Tissue used: 'full endosperm' |
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| AT5G43750 | PnsB5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.57977 x 10-1 | 14 | 2 | 5 | 1 | 87.50% | 16.67% | 16 | 6 | TAIR8 |
Avg. embryo expression (dissected): '41.4322' Avg. embryo expression (LCM): '28.2442' |
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| AT5G43750 | PnsB5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G43750 | PnsB5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43745 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.8 x 10-10 | 153 | 3 | 98.08% | 156 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43745 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 18 | 11 | 4 | 15 | 62.07% | 78.95% | 29 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004715' Avg. expression score for this sample: '8.87683' Avg. expression score in LCM sample: '2.68972' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G43745 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.647 x 10-3 | 60 | 18 | 25 | 114 | 76.92% | 82.01% | 78 | 139 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004715' Avg. expression score for this sample: '21.7709' Avg. expression score in LCM sample: '2.68972' Tissue used: 'full endosperm' |
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| AT5G43745 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 39 | 45 | 9 | 14 | 46.43% | 60.87% | 84 | 23 | TAIR8 |
Avg. embryo expression (dissected): '27.7962' Avg. embryo expression (LCM): '16.5271' |
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| AT5G43745 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.27735 x 10-1 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43745 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.34 x 10-3 | 105 | 12 | 89.74% | 117 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43740 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.11341 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43740 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 8 | 3 | 20 | 42.86% | 86.96% | 14 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.827413' Avg. expression score for this sample: '6.22471' Avg. expression score in LCM sample: '1.02885' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G43740 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 55 | 24 | 26 | 49 | 69.62% | 65.33% | 79 | 75 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.827413' Avg. expression score for this sample: '30.4307' Avg. expression score in LCM sample: '1.02885' Tissue used: 'full endosperm' |
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| AT5G43740 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 3 | 0 | 1 | 40.00% | 100.00% | 5 | 1 | TAIR8 |
Avg. embryo expression (dissected): '2.19896' Avg. embryo expression (LCM): '1.31865' |
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| AT5G43740 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 10 | 5 | 66.67% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43740 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G43730 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 3 | 2 | 4 | 50.00% | 66.67% | 6 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.905919' Avg. expression score for this sample: '21.4981' Avg. expression score in LCM sample: '6.95211' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G43730 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.05396 x 10-1 | 61 | 22 | 25 | 43 | 73.49% | 63.24% | 83 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.905919' Avg. expression score for this sample: '75.9998' Avg. expression score in LCM sample: '6.95211' Tissue used: 'full endosperm' |