| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G14010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0088 | 139 | 27 | 83.73% | 166 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G14010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.7 x 10-6 | 268 | 101 | 80 | 350 | 72.63% | 81.40% | 369 | 430 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000047' Avg. expression score for this sample: '264.961' Avg. expression score in LCM sample: '122.61' Tissue used: 'full endosperm' |
|||||
| AT1G14010 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-15 | 826 | 110 | 88.25% | 936 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G14010 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.48833 x 10-1 | 64 | 68 | 15 | 38 | 48.48% | 71.70% | 132 | 53 | TAIR8 |
Avg. embryo expression (dissected): '123.529' Avg. embryo expression (LCM): '106.145' |
||||
| AT1G14010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.33495 x 10-1 | 106 | 53 | 53 | 113 | 66.67% | 68.07% | 159 | 166 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000047' Avg. expression score for this sample: '133.965' Avg. expression score in LCM sample: '122.61' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G14010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.846 x 10-3 | 1153 | 300 | 79.35% | 1453 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G14000 | VIK | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 44 | 12 | 78.57% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G14000 | VIK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.51842 x 10-1 | 30 | 7 | 9 | 15 | 81.08% | 62.50% | 37 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.066535' Avg. expression score for this sample: '87.8935' Avg. expression score in LCM sample: '83.5723' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G14000 | VIK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.0835 x 10-2 | 33 | 11 | 6 | 34 | 75.00% | 85.00% | 44 | 40 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.066535' Avg. expression score for this sample: '163.13' Avg. expression score in LCM sample: '83.5723' Tissue used: 'full endosperm' |
||||
| AT1G14000 | VIK | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.91722 x 10-1 | 7 | 4 | 63.64% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G14000 | VIK | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.90529 x 10-1 | 8 | 4 | 2 | 3 | 66.67% | 60.00% | 12 | 5 | TAIR8 |
Avg. embryo expression (dissected): '78.7456' Avg. embryo expression (LCM): '72.0988' |
|||
| AT1G14000 | VIK | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2152 x 10-2 | 99 | 13 | 88.39% | 112 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13990 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '17.4466' Avg. embryo expression (LCM): '4.99831' |
|||||
| AT1G13990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 3 | 1 | 100.00% | 25.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.621855' Avg. expression score for this sample: '151.694' Avg. expression score in LCM sample: '62.9512' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G13990 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.56752 x 10-1 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G13990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.10132 x 10-1 | 11 | 4 | 3 | 16 | 73.33% | 84.21% | 15 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.621855' Avg. expression score for this sample: '149.013' Avg. expression score in LCM sample: '62.9512' Tissue used: 'full endosperm' |
|||||
| AT1G13980 | GN | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.5268 x 10-2 | 119 | 26 | 48 | 99 | 82.07% | 67.35% | 145 | 147 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.061315' Avg. expression score for this sample: '134.2' Avg. expression score in LCM sample: '90.0394' Tissue used: 'full endosperm' |
||||
| AT1G13980 | GN | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.574 x 10-3 | 21 | 23 | 47.73% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13980 | GN | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.45522 x 10-1 | 63 | 39 | 25 | 22 | 61.76% | 46.81% | 102 | 47 | TAIR8 |
Avg. embryo expression (dissected): '133.905' Avg. embryo expression (LCM): '81.0907' |
|||
| AT1G13980 | GN | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.16871 x 10-1 | 76 | 35 | 68.47% | 111 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13980 | GN | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.47572 x 10-1 | 79 | 31 | 31 | 58 | 71.82% | 65.17% | 110 | 89 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.061315' Avg. expression score for this sample: '108.32' Avg. expression score in LCM sample: '90.0394' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G13980 | GN | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-11 | 260 | 23 | 91.87% | 283 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13970 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2 x 10-5 | 107 | 4 | 96.40% | 111 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.5682 x 10-2 | 33 | 3 | 91.67% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.82043 x 10-1 | 4 | 0 | 1 | 5 | 100.00% | 83.33% | 4 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.820169' Avg. expression score for this sample: '8.38398' Avg. expression score in LCM sample: '1.4404' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G13970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.52787 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 2 | 10 | 20 | 60.00% | 66.67% | 5 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.820169' Avg. expression score for this sample: '7.5973' Avg. expression score in LCM sample: '1.4404' Tissue used: 'full endosperm' |
|||||
| AT1G13970 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 6 | 7 | 0 | 3 | 46.15% | 100.00% | 13 | 3 | TAIR8 |
Avg. embryo expression (dissected): '8.69223' Avg. embryo expression (LCM): '17.8583' |
||||
| AT1G13960 | WRKY4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '20.1597' Avg. embryo expression (LCM): '26.8879' |
|||||
| AT1G13960 | WRKY4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '11.3542' Avg. expression score in LCM sample: '10.7442' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G13960 | WRKY4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13960 | WRKY4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13960 | WRKY4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 1 | 1 | 100.00% | 50.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '23.2059' Avg. expression score in LCM sample: '10.7442' Tissue used: 'full endosperm' |
||||
| AT1G13960 | WRKY4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13950 | ELF5A-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13950 | ELF5A-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.198 x 10-2 | 5 | 1 | 14 | 4 | 83.33% | 22.22% | 6 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.122218' Avg. expression score for this sample: '23.4365' Avg. expression score in LCM sample: '4.04193' Tissue used: 'full endosperm' |
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| AT1G13950 | ELF5A-1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT1G13950 | ELF5A-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.73094 x 10-1 | 43 | 72 | 37.39% | 115 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13950 | ELF5A-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 1 | 6 | 5 | 85.71% | 45.45% | 7 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.122218' Avg. expression score for this sample: '26.7539' Avg. expression score in LCM sample: '4.04193' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G13950 | ELF5A-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-6 | 68 | 8 | 89.47% | 76 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13940 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.928 x 10-3 | 214 | 34 | 86.29% | 248 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.7571 x 10-2 | 136 | 65 | 67.66% | 201 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.00374 x 10-1 | 43 | 12 | 13 | 41 | 78.18% | 75.93% | 55 | 54 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005514' Avg. expression score for this sample: '39.509' Avg. expression score in LCM sample: '58.0127' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G13940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.254 x 10-2 | 104 | 24 | 39 | 92 | 81.25% | 70.23% | 128 | 131 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005514' Avg. expression score for this sample: '79.9908' Avg. expression score in LCM sample: '58.0127' Tissue used: 'full endosperm' |
|||||
| AT1G13940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.16853 x 10-1 | 25 | 11 | 69.44% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13940 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.30607 x 10-1 | 48 | 35 | 9 | 10 | 57.83% | 52.63% | 83 | 19 | TAIR8 |
Avg. embryo expression (dissected): '49.1629' Avg. embryo expression (LCM): '62.6045' |
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| AT1G13930 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '12.4361' Avg. embryo expression (LCM): '3.67966' |
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| AT1G13930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '79.7534' Avg. expression score in LCM sample: '12.9048' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G13930 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G13930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G13930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G13930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '171.304' Avg. expression score in LCM sample: '12.9048' Tissue used: 'full endosperm' |
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| AT1G13920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.77617 x 10-1 | 8 | 2 | 1 | 3 | 80.00% | 75.00% | 10 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '20.7537' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G13920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.0208 x 10-2 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.281592' Avg. embryo expression (LCM): '0' |
||||||
| AT1G13920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G13920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.80172 x 10-1 | 2 | 0 | 6 | 4 | 100.00% | 40.00% | 2 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.54446' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G13920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13910 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.77778 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.77778 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.51553' Avg. expression score in LCM sample: '3.32173' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G13910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G13910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 4 | 1 | 8 | 0.00% | 88.89% | 4 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.72716' Avg. expression score in LCM sample: '3.32173' Tissue used: 'full endosperm' |
|||||
| AT1G13910 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.95718' Avg. embryo expression (LCM): '10.3859' |
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| AT1G13900 | PAP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.14286 x 10-1 | 4 | 0 | 0 | 0 | 100.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '19.3887' Avg. embryo expression (LCM): '18.75' |
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| AT1G13900 | PAP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 4.80115 x 10-1 | 11 | 4 | 0 | 5 | 73.33% | 100.00% | 15 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '8.5e-06' Avg. expression score for this sample: '28.9969' Avg. expression score in LCM sample: '28.22' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G13900 | PAP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.83 x 10-4 | 178 | 10 | 94.68% | 188 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT1G13900 | PAP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.51468 x 10-1 | 100 | 16 | 86.21% | 116 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT1G13900 | PAP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 1.5 x 10-5 | 75 | 11 | 21 | 107 | 87.21% | 83.59% | 86 | 128 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '8.5e-06' Avg. expression score for this sample: '77.2375' Avg. expression score in LCM sample: '28.22' Tissue used: 'full endosperm' |
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| AT1G13900 | PAP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.47152 x 10-1 | 17 | 2 | 89.47% | 19 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT1G13890 | SNAP30 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13890 | SNAP30 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.83917' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G13890 | SNAP30 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.737794' Avg. embryo expression (LCM): '0' |
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| AT1G13890 | SNAP30 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13890 | SNAP30 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.993031' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G13890 | SNAP30 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13880 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2 x 10-10 | 435 | 55 | 88.78% | 490 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.466 x 10-3 | 469 | 199 | 70.21% | 668 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.72086 x 10-1 | 149 | 45 | 66 | 117 | 76.80% | 63.93% | 194 | 183 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '6.6e-08' Avg. expression score for this sample: '176.399' Avg. expression score in LCM sample: '101.033' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G13880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4 x 10-8 | 338 | 112 | 125 | 489 | 75.11% | 79.64% | 450 | 614 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '6.6e-08' Avg. expression score for this sample: '368.635' Avg. expression score in LCM sample: '101.033' Tissue used: 'full endosperm' |
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| AT1G13880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.2769 x 10-2 | 64 | 9 | 87.67% | 73 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G13880 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 63 | 58 | 24 | 21 | 52.07% | 46.67% | 121 | 45 | TAIR8 |
Avg. embryo expression (dissected): '151.767' Avg. embryo expression (LCM): '67.1507' |
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| AT1G13870 | DRL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.78317 x 10-1 | 26 | 23 | 4 | 10 | 53.06% | 71.43% | 49 | 14 | TAIR8 |
Avg. embryo expression (dissected): '103.628' Avg. embryo expression (LCM): '104.111' |
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| AT1G13870 | DRL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.5801 x 10-1 | 28 | 12 | 6 | 25 | 70.00% | 80.65% | 40 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.131422' Avg. expression score for this sample: '71.474' Avg. expression score in LCM sample: '66.6991' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G13870 | DRL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.3426 x 10-2 | 73 | 13 | 84.88% | 86 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13870 | DRL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.63867 x 10-1 | 67 | 25 | 72.83% | 92 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13870 | DRL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.80484 x 10-1 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13870 | DRL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.3114 x 10-1 | 20 | 8 | 12 | 40 | 71.43% | 76.92% | 28 | 52 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.131422' Avg. expression score for this sample: '146.951' Avg. expression score in LCM sample: '66.6991' Tissue used: 'full endosperm' |
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| AT1G13860 | QUL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.83814 x 10-1 | 7 | 2 | 14 | 33 | 77.78% | 70.21% | 9 | 47 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.70122' Avg. expression score for this sample: '42.4476' Avg. expression score in LCM sample: '12.552' Tissue used: 'full endosperm' |
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| AT1G13860 | QUL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.65821 x 10-1 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13860 | QUL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 9 | 11 | 4 | 5 | 45.00% | 55.56% | 20 | 9 | TAIR8 |
Avg. embryo expression (dissected): '86.8408' Avg. embryo expression (LCM): '87.1565' |
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| AT1G13860 | QUL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 10 | 4 | 71.43% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13860 | QUL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 2 | 0 | 4 | 50.00% | 100.00% | 4 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.70122' Avg. expression score for this sample: '28.9667' Avg. expression score in LCM sample: '12.552' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G13860 | QUL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.7903 x 10-2 | 30 | 3 | 90.91% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G13850 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G13850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G13850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G13850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |