| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G15960 | NRAMP6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.54545 x 10-1 | 4 | 0 | 0 | 2 | 100.00% | 100.00% | 4 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.02835' Avg. expression score for this sample: '51.9937' Avg. expression score in LCM sample: '1.16114' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15960 | NRAMP6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 13 | 13 | 1 | 1 | 50.00% | 50.00% | 26 | 2 | TAIR8 |
Avg. embryo expression (dissected): '33.1005' Avg. embryo expression (LCM): '18.7876' |
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| AT1G15960 | NRAMP6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.2896 x 10-2 | 51 | 12 | 12 | 40 | 80.95% | 76.92% | 63 | 52 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.02835' Avg. expression score for this sample: '615.653' Avg. expression score in LCM sample: '1.16114' Tissue used: 'full endosperm' |
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| AT1G15960 | NRAMP6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.13701 x 10-1 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15950 | CCR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.37363 x 10-1 | 138 | 47 | 74.59% | 185 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15950 | CCR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.188 x 10-3 | 343 | 170 | 74 | 327 | 66.86% | 81.55% | 513 | 401 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002866' Avg. expression score for this sample: '507.223' Avg. expression score in LCM sample: '31.1449' Tissue used: 'full endosperm' |
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| AT1G15950 | CCR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.93824 x 10-1 | 112 | 59 | 37 | 106 | 65.50% | 74.13% | 171 | 143 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002866' Avg. expression score for this sample: '198.948' Avg. expression score in LCM sample: '31.1449' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15950 | CCR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-25 | 244 | 4 | 98.39% | 248 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15950 | CCR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.0 x 10-30 | 358 | 11 | 97.02% | 369 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15950 | CCR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.2 x 10-5 | 150 | 385 | 82 | 153 | 28.04% | 65.11% | 535 | 235 | TAIR8 |
Avg. embryo expression (dissected): '804.531' Avg. embryo expression (LCM): '516.183' |
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| AT1G15940 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1406.39' Avg. embryo expression (LCM): '818.317' |
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| AT1G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 4 | 2 | 0 | 3 | 66.67% | 100.00% | 6 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1674.43' Avg. expression score in LCM sample: '140.468' Tissue used: 'full endosperm' |
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| AT1G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.3 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1829.27' Avg. expression score in LCM sample: '140.468' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.0956 x 10-2 | 269 | 198 | 101 | 214 | 57.60% | 67.94% | 467 | 315 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.229912' Avg. expression score for this sample: '1115.84' Avg. expression score in LCM sample: '371.181' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.35363 x 10-1 | 463 | 247 | 65.21% | 710 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15930 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.2 x 10-12 | 637 | 178 | 78.16% | 815 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15930 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.24498 x 10-1 | 762 | 875 | 211 | 271 | 46.55% | 56.22% | 1637 | 482 | TAIR8 |
Avg. embryo expression (dissected): '4258.83' Avg. embryo expression (LCM): '2834.52' |
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| AT1G15930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 57 | 31 | 64.77% | 88 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.12101 x 10-1 | 228 | 98 | 95 | 179 | 69.94% | 65.33% | 326 | 274 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.229912' Avg. expression score for this sample: '905.056' Avg. expression score in LCM sample: '371.181' Tissue used: 'full endosperm' |
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| AT1G15920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.2572 x 10-2 | 59 | 16 | 14 | 48 | 78.67% | 77.42% | 75 | 62 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.041559' Avg. expression score for this sample: '102.798' Avg. expression score in LCM sample: '31.2772' Tissue used: 'full endosperm' |
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| AT1G15920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.39144 x 10-1 | 10 | 7 | 58.82% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.258 x 10-3 | 127 | 16 | 88.81% | 143 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 70 | 21 | 76.92% | 91 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.37917 x 10-1 | 21 | 5 | 10 | 20 | 80.77% | 66.67% | 26 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.041559' Avg. expression score for this sample: '81.6902' Avg. expression score in LCM sample: '31.2772' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.91329 x 10-1 | 16 | 5 | 6 | 1 | 76.19% | 14.29% | 21 | 7 | TAIR8 |
Avg. embryo expression (dissected): '57.1895' Avg. embryo expression (LCM): '62.3533' |
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| AT1G15910 | FDM1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.7 x 10-11 | 146 | 20 | 11 | 4 | 87.95% | 26.67% | 166 | 15 | TAIR8 |
Avg. embryo expression (dissected): '4825.63' Avg. embryo expression (LCM): '2779.73' |
|||
| AT1G15910 | FDM1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.74 x 10-4 | 2 | 14 | 12.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15910 | FDM1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.24 x 10-4 | 253 | 17 | 218 | 45 | 93.70% | 17.11% | 270 | 263 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000851' Avg. expression score for this sample: '4534.05' Avg. expression score in LCM sample: '442.26' Tissue used: 'full endosperm' |
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| AT1G15910 | FDM1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.54161 x 10-1 | 115 | 9 | 63 | 16 | 92.74% | 20.25% | 124 | 79 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000851' Avg. expression score for this sample: '3465.05' Avg. expression score in LCM sample: '442.26' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15910 | FDM1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.24504 x 10-1 | 6 | 10 | 37.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15910 | FDM1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.7 x 10-11 | 62 | 3 | 95.38% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15900 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.35875 x 10-1 | 0 | 4 | 0.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.25806 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 6 | 0.00% | 100.00% | 1 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.186373' Avg. expression score for this sample: '4.57166' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15900 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.0742 x 10-2 | 1 | 16 | 0 | 2 | 5.88% | 100.00% | 17 | 2 | TAIR8 |
Avg. embryo expression (dissected): '18.8397' Avg. embryo expression (LCM): '18.4109' |
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| AT1G15900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.365 x 10-2 | 2 | 14 | 1 | 5 | 12.50% | 83.33% | 16 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.186373' Avg. expression score for this sample: '8.32742' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G15900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.649 x 10-2 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G15890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.79605' Avg. expression score in LCM sample: '2.52804' Tissue used: 'full endosperm' |
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| AT1G15890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 2 | 1 | 33.33% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.5967' Avg. expression score in LCM sample: '2.52804' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.4 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15890 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15890 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 1 | 1 | 0 | 50.00% | 0.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '3.20976' Avg. embryo expression (LCM): '2.16008' |
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| AT1G15885 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '5.54048' Avg. embryo expression (LCM): '9.58219' |
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| AT1G15885 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '6.05707' Avg. expression score in LCM sample: '5.6146' Tissue used: 'full endosperm' |
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| AT1G15885 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G15885 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G15885 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G15885 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.41397' Avg. expression score in LCM sample: '5.6146' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15880 | GOS11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.00551 x 10-1 | 84 | 28 | 31 | 85 | 75.00% | 73.28% | 112 | 116 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000818' Avg. expression score for this sample: '67.8099' Avg. expression score in LCM sample: '32.2472' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15880 | GOS11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-6 | 305 | 41 | 88.15% | 346 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15880 | GOS11 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.98217 x 10-1 | 263 | 72 | 78.51% | 335 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15880 | GOS11 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.60141 x 10-1 | 45 | 34 | 6 | 6 | 56.96% | 50.00% | 79 | 12 | TAIR8 |
Avg. embryo expression (dissected): '42.3857' Avg. embryo expression (LCM): '27.5535' |
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| AT1G15880 | GOS11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.0031 x 10-2 | 34 | 4 | 89.47% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15880 | GOS11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.938 x 10-3 | 135 | 36 | 55 | 157 | 78.95% | 74.06% | 171 | 212 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000818' Avg. expression score for this sample: '77.312' Avg. expression score in LCM sample: '32.2472' Tissue used: 'full endosperm' |
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| AT1G15870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 4 | 2 | 7 | 20.00% | 77.78% | 5 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.737428' Avg. expression score for this sample: '12.1614' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G15870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15870 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 16 | 13 | 55.17% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.229 x 10-3 | 20 | 0 | 100.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 2 | 0 | 3 | 0.00% | 100.00% | 2 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.737428' Avg. expression score for this sample: '5.55034' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15870 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.2381 x 10-1 | 0 | 4 | 0 | 1 | 0.00% | 100.00% | 4 | 1 | TAIR8 |
Avg. embryo expression (dissected): '6.56214' Avg. embryo expression (LCM): '25.6572' |
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| AT1G15860 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.08392 x 10-1 | 2 | 4 | 1 | 0 | 33.33% | 0.00% | 6 | 1 | TAIR8 |
Avg. embryo expression (dissected): '22.5838' Avg. embryo expression (LCM): '27.7419' |
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| AT1G15860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.71717 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.43 x 10-4 | 29 | 3 | 3 | 34 | 90.62% | 91.89% | 32 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001507' Avg. expression score for this sample: '86.7895' Avg. expression score in LCM sample: '11.9641' Tissue used: 'full endosperm' |
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| AT1G15860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 3 | 1 | 5 | 40.00% | 83.33% | 5 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001507' Avg. expression score for this sample: '19.8258' Avg. expression score in LCM sample: '11.9641' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.8202 x 10-2 | 110 | 35 | 75.86% | 145 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15860 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.88174 x 10-1 | 101 | 25 | 80.16% | 126 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15850 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G15850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G15850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15850 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G15850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G15850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G15840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.92754 x 10-1 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.384541' Avg. expression score for this sample: '.574361' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G15840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.21739 x 10-1 | 0 | 0 | 1 | 12 | 92.31% | 0 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.384541' Avg. expression score for this sample: '5.657' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.49226 x 10-1 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15840 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.20588 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15840 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.64182 x 10-1 | 1 | 5 | 9 | 3 | 16.67% | 25.00% | 6 | 12 | TAIR8 |
Avg. embryo expression (dissected): '14.8805' Avg. embryo expression (LCM): '0' |
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| AT1G15830 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.838 x 10-2 | 83 | 91 | 64 | 117 | 47.70% | 64.64% | 174 | 181 | TAIR8 |
Avg. embryo expression (dissected): '2012.72' Avg. embryo expression (LCM): '117.712' |
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| AT1G15830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.7791 x 10-2 | 50 | 37 | 24 | 29 | 57.47% | 54.72% | 87 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.102602' Avg. expression score for this sample: '187.999' Avg. expression score in LCM sample: '19.2396' Tissue used: 'full endosperm' |
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| AT1G15830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.6886 x 10-2 | 3 | 7 | 30.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15830 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.89231 x 10-1 | 2 | 3 | 40.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G15830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.47189 x 10-1 | 63 | 38 | 42 | 75 | 62.38% | 64.10% | 101 | 117 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.102602' Avg. expression score for this sample: '413.497' Avg. expression score in LCM sample: '19.2396' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15825 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.13982 x 10-1 | 7 | 1 | 3 | 8 | 87.50% | 72.73% | 8 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '44.2479' Avg. expression score in LCM sample: '7.7311' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15825 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.33333 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15825 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G15825 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 34 | 27 | 19 | 13 | 55.74% | 40.62% | 61 | 32 | TAIR8 |
Avg. embryo expression (dissected): '575.854' Avg. embryo expression (LCM): '23.1329' |
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| AT1G15825 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.97175 x 10-1 | 2 | 2 | 50.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G15825 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.41255 x 10-1 | 28 | 10 | 10 | 7 | 73.68% | 41.18% | 38 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '101.29' Avg. expression score in LCM sample: '7.7311' Tissue used: 'full endosperm' |
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| AT1G15820 | LHCB6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.18233 x 10-1 | 393 | 187 | 425 | 745 | 67.76% | 63.68% | 580 | 1170 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.156311' Avg. expression score for this sample: '2156.48' Avg. expression score in LCM sample: '1116.35' Tissue used: 'full endosperm' |
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| AT1G15820 | LHCB6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.91053 x 10-1 | 91 | 63 | 59.09% | 154 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15820 | LHCB6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.8884 x 10-1 | 161 | 91 | 63.89% | 252 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15820 | LHCB6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 172 | 95 | 64.42% | 267 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G15820 | LHCB6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.71807 x 10-1 | 75 | 45 | 34 | 40 | 62.50% | 54.05% | 120 | 74 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.156311' Avg. expression score for this sample: '2402.61' Avg. expression score in LCM sample: '1116.35' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G15820 | LHCB6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.86845 x 10-1 | 124 | 128 | 45 | 34 | 49.21% | 43.04% | 252 | 79 | TAIR8 |
Avg. embryo expression (dissected): '5426.92' Avg. embryo expression (LCM): '3498.54' |