| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G19600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.01107 x 10-1 | 86 | 55 | 60.99% | 141 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 20 | 8 | 18 | 29 | 71.43% | 61.70% | 28 | 47 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.521418' Avg. expression score for this sample: '115.088' Avg. expression score in LCM sample: '42.0801' Tissue used: 'full endosperm' |
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| AT1G19600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.6694 x 10-2 | 1 | 4 | 20.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.35226 x 10-1 | 33 | 26 | 6 | 5 | 55.93% | 45.45% | 59 | 11 | TAIR8 |
Avg. embryo expression (dissected): '186.064' Avg. embryo expression (LCM): '159.62' |
||||
| AT1G19600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.42128 x 10-1 | 24 | 12 | 12 | 10 | 66.67% | 45.45% | 36 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.521418' Avg. expression score for this sample: '113.031' Avg. expression score in LCM sample: '42.0801' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.197 x 10-3 | 91 | 21 | 81.25% | 112 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19580 | GAMMA CA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19580 | GAMMA CA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '208.294' Avg. expression score in LCM sample: '99.3579' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G19580 | GAMMA CA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '275.222' Avg. expression score in LCM sample: '99.3579' Tissue used: 'full endosperm' |
||||||
| AT1G19580 | GAMMA CA1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19580 | GAMMA CA1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '293.59' Avg. embryo expression (LCM): '250.983' |
|||||
| AT1G19580 | GAMMA CA1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19570 | DHAR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.68413 x 10-1 | 26 | 12 | 68.42% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G19570 | DHAR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 2 | 1 | 3 | 0.00% | 75.00% | 2 | 4 | TAIR8 |
Avg. embryo expression (dissected): '122.04' Avg. embryo expression (LCM): '41.2173' |
|||
| AT1G19570 | DHAR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.95759 x 10-1 | 49 | 15 | 27 | 42 | 76.56% | 60.87% | 64 | 69 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.018772' Avg. expression score for this sample: '1541.88' Avg. expression score in LCM sample: '437.395' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G19570 | DHAR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.2 x 10-25 | 297 | 4 | 98.67% | 301 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G19570 | DHAR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-11 | 91 | 0 | 100.00% | 91 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G19570 | DHAR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.1485 x 10-2 | 141 | 36 | 54 | 136 | 79.66% | 71.58% | 177 | 190 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.018772' Avg. expression score for this sample: '1341.05' Avg. expression score in LCM sample: '437.395' Tissue used: 'full endosperm' |
||||
| AT1G19550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '270.065' Avg. expression score in LCM sample: '54.3235' Tissue used: 'full endosperm' |
|||||||
| AT1G19550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G19550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '19.8892' Avg. embryo expression (LCM): '5.46298' |
||||||
| AT1G19550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G19550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G19550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '204.822' Avg. expression score in LCM sample: '54.3235' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G19540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G19540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.325896' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G19540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G19540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G19530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G19530 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.9199' Avg. embryo expression (LCM): '0' |
||||||
| AT1G19530 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.02564 x 10-1 | 1 | 5 | 16.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.368411' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 5 | 2 | 0 | 0 | 71.43% | 7 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.11945' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT1G19530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19520 | NFD5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.04396 x 10-1 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G19520 | NFD5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 4 | 2 | 100.00% | 33.33% | 2 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.669921' Avg. expression score for this sample: '300.876' Avg. expression score in LCM sample: '103.606' Tissue used: 'full endosperm' |
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| AT1G19520 | NFD5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 3 | 0 | 2 | 40.00% | 100.00% | 5 | 2 | TAIR8 |
Avg. embryo expression (dissected): '411.483' Avg. embryo expression (LCM): '499.769' |
|||
| AT1G19520 | NFD5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G19520 | NFD5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 1 | 0 | 50.00% | 0.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.669921' Avg. expression score for this sample: '162.187' Avg. expression score in LCM sample: '103.606' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19520 | NFD5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.0279 x 10-2 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G19510 | RL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19510 | RL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19510 | RL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT1G19510 | RL5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19510 | RL5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19510 | RL5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT1G19500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.23 x 10-3 | 0 | 0 | 1 | 17 | 94.44% | 0 | 18 | TAIR8 |
Avg. embryo expression (dissected): '26.5314' Avg. embryo expression (LCM): '0' |
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| AT1G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.79674 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.3818 x 10-2 | 3 | 9 | 3 | 54 | 25.00% | 94.74% | 12 | 57 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.125557' Avg. expression score for this sample: '38.8109' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.14 x 10-4 | 0 | 5 | 0.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 7 | 0 | 10 | 0.00% | 100.00% | 7 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.125557' Avg. expression score for this sample: '10.6363' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G19490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.014 x 10-2 | 27 | 5 | 9 | 44 | 84.38% | 83.02% | 32 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.040795' Avg. expression score for this sample: '31.2047' Avg. expression score in LCM sample: '11.0381' Tissue used: 'full endosperm' |
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| AT1G19490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.07427 x 10-1 | 60 | 14 | 81.08% | 74 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 2 | 80.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.8515 | 23 | 15 | 12 | 7 | 60.53% | 36.84% | 38 | 19 | TAIR8 |
Avg. embryo expression (dissected): '49.924' Avg. embryo expression (LCM): '66.7865' |
||||
| AT1G19490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5442 x 10-2 | 85 | 10 | 89.47% | 95 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.12508 x 10-1 | 27 | 11 | 9 | 21 | 71.05% | 70.00% | 38 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.040795' Avg. expression score for this sample: '27.8236' Avg. expression score in LCM sample: '11.0381' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19485 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.30828 x 10-1 | 104 | 37 | 61 | 98 | 73.76% | 61.64% | 141 | 159 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.028304' Avg. expression score for this sample: '76.7103' Avg. expression score in LCM sample: '17.7257' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19485 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.1 x 10-6 | 127 | 12 | 91.37% | 139 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19485 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.04209 x 10-1 | 58 | 28 | 67.44% | 86 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19485 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.92 x 10-3 | 136 | 25 | 32 | 77 | 84.47% | 70.64% | 161 | 109 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.028304' Avg. expression score for this sample: '60.417' Avg. expression score in LCM sample: '17.7257' Tissue used: 'full endosperm' |
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| AT1G19485 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.26752 x 10-1 | 86 | 64 | 22 | 26 | 57.33% | 54.17% | 150 | 48 | TAIR8 |
Avg. embryo expression (dissected): '81.3767' Avg. embryo expression (LCM): '54.7303' |
||||
| AT1G19485 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.20812 x 10-1 | 17 | 2 | 89.47% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.60067 x 10-1 | 29 | 12 | 70.73% | 41 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.02036 x 10-1 | 89 | 67 | 19 | 9 | 57.05% | 32.14% | 156 | 28 | TAIR8 |
Avg. embryo expression (dissected): '92.6422' Avg. embryo expression (LCM): '44.5704' |
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| AT1G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.8 x 10-26 | 400 | 20 | 95.24% | 420 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.76452 x 10-1 | 124 | 52 | 70 | 128 | 70.45% | 64.65% | 176 | 198 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.035321' Avg. expression score for this sample: '121.88' Avg. expression score in LCM sample: '35.3926' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.423 x 10-3 | 194 | 27 | 67 | 104 | 87.78% | 60.82% | 221 | 171 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.035321' Avg. expression score for this sample: '71.3621' Avg. expression score in LCM sample: '35.3926' Tissue used: 'full endosperm' |
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| AT1G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-6 | 103 | 91 | 53.09% | 194 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.93457' Avg. expression score in LCM sample: '3.5569' Tissue used: 'full endosperm' |
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| AT1G19470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.469017' Avg. embryo expression (LCM): '0' |
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| AT1G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.28224' Avg. expression score in LCM sample: '3.5569' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.33333 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19464 | MIR864A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19464 | MIR864A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19464 | MIR864A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G19464 | MIR864A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19464 | MIR864A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19464 | MIR864A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G19460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.9412 x 10-2 | 9 | 0 | 0 | 0 | 100.00% | 9 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.15038' Avg. embryo expression (LCM): '0' |
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| AT1G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.72028 x 10-1 | 77 | 2 | 32 | 2 | 97.47% | 5.88% | 79 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.716413' Avg. expression score for this sample: '35.6547' Avg. expression score in LCM sample: '23.5167' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.07086 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-6 | 4 | 20 | 16.67% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 25 | 0 | 14 | 5 | 100.00% | 26.32% | 25 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.716413' Avg. expression score for this sample: '8.92129' Avg. expression score in LCM sample: '23.5167' Tissue used: 'full endosperm' |
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| AT1G19450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.08876 x 10-1 | 12 | 4 | 19 | 12 | 75.00% | 38.71% | 16 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.239873' Avg. expression score for this sample: '149.391' Avg. expression score in LCM sample: '523.084' Tissue used: 'full endosperm' |
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| AT1G19450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.2832 x 10-2 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.4785 x 10-1 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19450 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 1 | 1 | 2 | 66.67% | 66.67% | 3 | 3 | TAIR8 |
Avg. embryo expression (dissected): '29.2157' Avg. embryo expression (LCM): '10.3734' |
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| AT1G19450 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-5 | 25 | 0 | 100.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G19450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.3768 x 10-1 | 33 | 11 | 18 | 16 | 75.00% | 47.06% | 44 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.239873' Avg. expression score for this sample: '436.712' Avg. expression score in LCM sample: '523.084' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19440 | KCS4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 29 | 17 | 27 | 57 | 63.04% | 67.86% | 46 | 84 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.216134' Avg. expression score for this sample: '392.026' Avg. expression score in LCM sample: '499.744' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G19440 | KCS4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.0 x 10-5 | 95 | 10 | 90.48% | 105 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G19440 | KCS4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.7 x 10-6 | 71 | 4 | 94.67% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G19440 | KCS4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.7143 x 10-2 | 57 | 11 | 30 | 73 | 83.82% | 70.87% | 68 | 103 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.216134' Avg. expression score for this sample: '444.9' Avg. expression score in LCM sample: '499.744' Tissue used: 'full endosperm' |