| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G20693 | HMGB2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.97792 x 10-1 | 96 | 15 | 86.49% | 111 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20693 | HMGB2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.51186 x 10-1 | 10 | 4 | 4 | 2 | 71.43% | 33.33% | 14 | 6 | TAIR8 |
Avg. embryo expression (dissected): '307.785' Avg. embryo expression (LCM): '406.232' |
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| AT1G20693 | HMGB2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.13523 x 10-1 | 50 | 3 | 94.34% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20693 | HMGB2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.39 x 10-4 | 22 | 5 | 6 | 56 | 81.48% | 90.32% | 27 | 62 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004645' Avg. expression score for this sample: '749.493' Avg. expression score in LCM sample: '68.36' Tissue used: 'full endosperm' |
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| AT1G20690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.1517 x 10-2 | 37 | 9 | 4 | 35 | 80.43% | 89.74% | 46 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.288776' Avg. expression score for this sample: '43.1092' Avg. expression score in LCM sample: '87.9229' Tissue used: 'full endosperm' |
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| AT1G20690 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.37304 x 10-1 | 24 | 50 | 6 | 11 | 32.43% | 64.71% | 74 | 17 | TAIR8 |
Avg. embryo expression (dissected): '91.8418' Avg. embryo expression (LCM): '55.0568' |
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| AT1G20690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.65778 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20690 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 136 | 540 | 20.12% | 676 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.6 x 10-17 | 2413 | 108 | 95.72% | 2521 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.10597 x 10-1 | 11 | 20 | 3 | 17 | 35.48% | 85.00% | 31 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.288776' Avg. expression score for this sample: '28.8586' Avg. expression score in LCM sample: '87.9229' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.0741 x 10-2 | 8 | 0 | 0 | 6 | 100.00% | 100.00% | 8 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '14.4086' Avg. expression score in LCM sample: '30.3659' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.4186 x 10-1 | 576 | 0 | 100.00% | 576 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 84 | 0 | 100.00% | 84 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 92 | 1 | 0 | 349 | 98.92% | 100.00% | 93 | 349 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '206.017' Avg. expression score in LCM sample: '30.3659' Tissue used: 'full endosperm' |
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| AT1G20680 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.260846' Avg. embryo expression (LCM): '0' |
||||||
| AT1G20680 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.00351 x 10-1 | 683 | 0 | 100.00% | 683 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20670 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-17 | 597 | 59 | 91.01% | 656 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20670 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.905 x 10-3 | 195 | 45 | 84 | 187 | 81.25% | 69.00% | 240 | 271 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002151' Avg. expression score for this sample: '1332.39' Avg. expression score in LCM sample: '81.353' Tissue used: 'full endosperm' |
|||||
| AT1G20670 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.4706 x 10-2 | 444 | 192 | 69.81% | 636 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20670 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.8008 x 10-2 | 44 | 6 | 88.00% | 50 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20670 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.07474 x 10-1 | 57 | 45 | 30 | 15 | 55.88% | 33.33% | 102 | 45 | TAIR8 |
Avg. embryo expression (dissected): '909.349' Avg. embryo expression (LCM): '223.266' |
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| AT1G20670 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.14691 x 10-1 | 96 | 19 | 53 | 91 | 83.48% | 63.19% | 115 | 144 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002151' Avg. expression score for this sample: '920.762' Avg. expression score in LCM sample: '81.353' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20650 | ASG5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.69103' Avg. expression score in LCM sample: '1.61677' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20650 | ASG5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '12.4615' Avg. embryo expression (LCM): '8.2761' |
||||
| AT1G20650 | ASG5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20650 | ASG5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20650 | ASG5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.65927' Avg. expression score in LCM sample: '1.61677' Tissue used: 'full endosperm' |
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| AT1G20650 | ASG5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G20640 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.9398 x 10-2 | 23 | 1 | 95.83% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20640 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.2381 x 10-1 | 1 | 2 | 2 | 0 | 33.33% | 0.00% | 3 | 2 | TAIR8 |
Avg. embryo expression (dissected): '139.156' Avg. embryo expression (LCM): '38.9567' |
||||
| AT1G20640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.37255 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 1 | 2 | 4 | 75.00% | 66.67% | 4 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '98.6892' Avg. expression score in LCM sample: '7.20198' Tissue used: 'full endosperm' |
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| AT1G20640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 1 | 1 | 0 | 80.00% | 0.00% | 5 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '77.9121' Avg. expression score in LCM sample: '7.20198' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20630 | CAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.685082' Avg. expression score for this sample: '139.01' Avg. expression score in LCM sample: '51.7661' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20630 | CAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.81659 x 10-1 | 5 | 1 | 2 | 7 | 83.33% | 77.78% | 6 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.685082' Avg. expression score for this sample: '385.631' Avg. expression score in LCM sample: '51.7661' Tissue used: 'full endosperm' |
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| AT1G20630 | CAT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '269.939' Avg. embryo expression (LCM): '135.181' |
||||
| AT1G20630 | CAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20630 | CAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.61538 x 10-1 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20630 | CAT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20620 | CAT3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.05596 x 10-1 | 232 | 8 | 96.67% | 240 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20620 | CAT3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.05021 x 10-1 | 59 | 1 | 98.33% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20620 | CAT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 262 | 3 | 20 | 420 | 98.87% | 95.45% | 265 | 440 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '179.288' Avg. expression score in LCM sample: '10.0828' Tissue used: 'full endosperm' |
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| AT1G20620 | CAT3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 41 | 27 | 19 | 7 | 60.29% | 26.92% | 68 | 26 | TAIR8 |
Avg. embryo expression (dissected): '77.7282' Avg. embryo expression (LCM): '19.8928' |
|||
| AT1G20620 | CAT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.1269 x 10-2 | 1269 | 33 | 97.47% | 1302 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20620 | CAT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.124 x 10-3 | 54 | 3 | 6 | 13 | 94.74% | 68.42% | 57 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '39.6958' Avg. expression score in LCM sample: '10.0828' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20610 | CYCB2;3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.7987 x 10-1 | 650 | 542 | 218 | 978 | 54.53% | 81.77% | 1192 | 1196 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001301' Avg. expression score for this sample: '232.923' Avg. expression score in LCM sample: '131.561' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20610 | CYCB2;3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.7 x 10-11 | 323 | 256 | 55.79% | 579 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20610 | CYCB2;3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.67 x 10-4 | 302 | 300 | 181 | 959 | 50.17% | 84.12% | 602 | 1140 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001301' Avg. expression score for this sample: '130.052' Avg. expression score in LCM sample: '131.561' Tissue used: 'full endosperm' |
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| AT1G20610 | CYCB2;3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.067 x 10-3 | 564 | 189 | 74.90% | 753 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20610 | CYCB2;3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.29768 x 10-1 | 62 | 20 | 75.61% | 82 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20610 | CYCB2;3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.5729 x 10-1 | 491 | 834 | 179 | 433 | 37.06% | 70.75% | 1325 | 612 | TAIR8 |
Avg. embryo expression (dissected): '295.669' Avg. embryo expression (LCM): '219.31' |
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| AT1G20600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '5.43905' Avg. embryo expression (LCM): '8.45192' |
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| AT1G20600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G20600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G20600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.70294' Avg. expression score in LCM sample: '3.29233' Tissue used: 'full endosperm' |
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| AT1G20600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G20600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.575566' Avg. expression score in LCM sample: '3.29233' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.2195' Avg. expression score in LCM sample: '9.877' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G20590 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G20590 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '12.3236' Avg. embryo expression (LCM): '6.32952' |
||||||
| AT1G20590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G20590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4.89106' Avg. expression score in LCM sample: '9.877' Tissue used: 'full endosperm' |
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| AT1G20580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '322.256' Avg. expression score in LCM sample: '172.803' Tissue used: 'full endosperm' |
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| AT1G20580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '874.365' Avg. embryo expression (LCM): '862.674' |
|||||
| AT1G20580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G20580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G20580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '333.967' Avg. expression score in LCM sample: '172.803' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20575 | DPMS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '149.46' Avg. expression score in LCM sample: '102.709' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20575 | DPMS1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '173.906' Avg. embryo expression (LCM): '175.519' |
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| AT1G20575 | DPMS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '271.671' Avg. expression score in LCM sample: '102.709' Tissue used: 'full endosperm' |
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| AT1G20575 | DPMS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20575 | DPMS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20575 | DPMS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.95604 x 10-1 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.310777' Avg. expression score for this sample: '3.81893' Avg. expression score in LCM sample: '8.56888' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.76471 x 10-1 | 5 | 1 | 0 | 3 | 83.33% | 100.00% | 6 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.310777' Avg. expression score for this sample: '6.27097' Avg. expression score in LCM sample: '8.56888' Tissue used: 'full endosperm' |
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| AT1G20570 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.14286 x 10-1 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20570 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 4 | 0 | 1 | 42.86% | 100.00% | 7 | 1 | TAIR8 |
Avg. embryo expression (dissected): '10.5726' Avg. embryo expression (LCM): '13.3498' |
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| AT1G20560 | AAE1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.32107 x 10-1 | 21 | 36 | 9 | 11 | 36.84% | 55.00% | 57 | 20 | TAIR8 |
Avg. embryo expression (dissected): '127.628' Avg. embryo expression (LCM): '100.117' |
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| AT1G20560 | AAE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.491 x 10-3 | 86 | 35 | 27 | 131 | 71.07% | 82.91% | 121 | 158 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003144' Avg. expression score for this sample: '153.548' Avg. expression score in LCM sample: '95.1984' Tissue used: 'full endosperm' |
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| AT1G20560 | AAE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.8653 x 10-2 | 100 | 15 | 86.96% | 115 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20560 | AAE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.47285 x 10-1 | 24 | 5 | 82.76% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20560 | AAE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.14 x 10-4 | 57 | 3 | 95.00% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G20560 | AAE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.04346 x 10-1 | 42 | 17 | 12 | 37 | 71.19% | 75.51% | 59 | 49 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003144' Avg. expression score for this sample: '124.932' Avg. expression score in LCM sample: '95.1984' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.8084 x 10-1 | 8 | 3 | 3 | 12 | 72.73% | 80.00% | 11 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.3e-18' Avg. expression score for this sample: '84.687' Avg. expression score in LCM sample: '15.8444' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.3 x 10-6 | 208 | 49 | 80.93% | 257 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 2 | 2 | 0 | 71.43% | 0.00% | 7 | 2 | TAIR8 |
Avg. embryo expression (dissected): '25.0257' Avg. embryo expression (LCM): '19.7044' |
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| AT1G20550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4 x 10-19 | 114 | 3 | 11 | 161 | 97.44% | 93.60% | 117 | 172 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.3e-18' Avg. expression score for this sample: '239.327' Avg. expression score in LCM sample: '15.8444' Tissue used: 'full endosperm' |
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| AT1G20550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.6 x 10-4 | 351 | 57 | 86.03% | 408 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.47898 x 10-1 | 8 | 2 | 80.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 3 | 5 | 50.00% | 62.50% | 2 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.536507' Avg. expression score for this sample: '37.0764' Avg. expression score in LCM sample: '25.7654' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G20540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.80172 x 10-1 | 1 | 5 | 1 | 5 | 16.67% | 83.33% | 6 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.536507' Avg. expression score for this sample: '37.5528' Avg. expression score in LCM sample: '25.7654' Tissue used: 'full endosperm' |
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| AT1G20540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.78261 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G20540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.34842 x 10-1 | 1 | 7 | 0 | 1 | 12.50% | 100.00% | 8 | 1 | TAIR8 |
Avg. embryo expression (dissected): '42.4055' Avg. embryo expression (LCM): '23.0199' |