| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G23010 | LPR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.98464 x 10-1 | 54 | 36 | 20 | 10 | 60.00% | 33.33% | 90 | 30 | TAIR8 |
Avg. embryo expression (dissected): '308.125' Avg. embryo expression (LCM): '121.077' |
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| AT1G23010 | LPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.3 x 10-7 | 1003 | 16 | 98.43% | 1019 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G23010 | LPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 1106 | 19 | 46 | 314 | 98.31% | 87.22% | 1125 | 360 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '805.537' Avg. expression score in LCM sample: '103.253' Tissue used: 'full endosperm' |
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| AT1G23010 | LPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 120 | 6 | 95.24% | 126 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G23000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.10751 x 10-1 | 13 | 13 | 50.00% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G23000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.5861 x 10-2 | 49 | 42 | 42 | 54 | 53.85% | 56.25% | 91 | 96 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.052313' Avg. expression score for this sample: '80.4859' Avg. expression score in LCM sample: '30.6011' Tissue used: 'full endosperm' |
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| AT1G23000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.24576 x 10-1 | 108 | 55 | 28 | 39 | 66.26% | 58.21% | 163 | 67 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.052313' Avg. expression score for this sample: '166.478' Avg. expression score in LCM sample: '30.6011' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G23000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.39693 x 10-1 | 5 | 7 | 41.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G23000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 46 | 31 | 59.74% | 77 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G23000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.58191 x 10-1 | 383 | 277 | 232 | 142 | 58.03% | 37.97% | 660 | 374 | TAIR8 |
Avg. embryo expression (dissected): '1267.76' Avg. embryo expression (LCM): '997.766' |
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| AT1G22990 | HIPP22 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.98069' Avg. embryo expression (LCM): '0' |
|||||
| AT1G22990 | HIPP22 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22990 | HIPP22 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.4 x 10-15 | 84 | 0 | 0 | 42 | 100.00% | 100.00% | 84 | 42 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.7e-15' Avg. expression score for this sample: '364.668' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G22990 | HIPP22 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G22990 | HIPP22 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G22990 | HIPP22 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.7e-15' Avg. expression score for this sample: '37.0884' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22985 | CRF7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.66898 x 10-1 | 58 | 13 | 33 | 54 | 81.69% | 62.07% | 71 | 87 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00001' Avg. expression score for this sample: '159.177' Avg. expression score in LCM sample: '18.7104' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22985 | CRF7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.136 x 10-3 | 76 | 5 | 93.83% | 81 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G22985 | CRF7 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.829 x 10-2 | 79 | 31 | 71.82% | 110 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G22985 | CRF7 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.6047 x 10-2 | 20 | 4 | 3 | 5 | 83.33% | 62.50% | 24 | 8 | TAIR8 |
Avg. embryo expression (dissected): '40.8432' Avg. embryo expression (LCM): '30.2034' |
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| AT1G22985 | CRF7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.19077 x 10-1 | 65 | 11 | 85.53% | 76 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G22985 | CRF7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.7 x 10-8 | 85 | 7 | 22 | 117 | 92.39% | 84.17% | 92 | 139 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00001' Avg. expression score for this sample: '229.273' Avg. expression score in LCM sample: '18.7104' Tissue used: 'full endosperm' |
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| AT1G22980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 2 | 1 | 33.33% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '16.9719' Avg. expression score in LCM sample: '3.01307' Tissue used: 'full endosperm' |
||||||
| AT1G22980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G22980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '18.3899' Avg. expression score in LCM sample: '3.01307' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22980 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '5.51331' Avg. embryo expression (LCM): '5.14902' |
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| AT1G22980 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G22970 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.0942 x 10-2 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22970 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.95098 x 10-1 | 7 | 5 | 0 | 1 | 58.33% | 100.00% | 12 | 1 | TAIR8 |
Avg. embryo expression (dissected): '101.057' Avg. embryo expression (LCM): '133.623' |
||||
| AT1G22970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 2 | 50.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.64569 x 10-1 | 15 | 5 | 11 | 4 | 75.00% | 26.67% | 20 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.310597' Avg. expression score for this sample: '160.724' Avg. expression score in LCM sample: '30.5423' Tissue used: 'full endosperm' |
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| AT1G22970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.15987 x 10-1 | 6 | 2 | 5 | 3 | 75.00% | 37.50% | 8 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.310597' Avg. expression score for this sample: '78.2413' Avg. expression score in LCM sample: '30.5423' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.42189 x 10-1 | 7 | 4 | 63.64% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.96965 x 10-1 | 109 | 49 | 68.99% | 158 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.29569 x 10-1 | 9 | 8 | 6 | 7 | 52.94% | 53.85% | 17 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.069842' Avg. expression score for this sample: '13.7757' Avg. expression score in LCM sample: '19.0926' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22960 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.34816 x 10-1 | 14 | 7 | 4 | 5 | 66.67% | 55.56% | 21 | 9 | TAIR8 |
Avg. embryo expression (dissected): '33.7203' Avg. embryo expression (LCM): '57.0787' |
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| AT1G22960 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.3 x 10-7 | 156 | 10 | 93.98% | 166 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3638 x 10-2 | 86 | 22 | 17 | 59 | 79.63% | 77.63% | 108 | 76 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.069842' Avg. expression score for this sample: '40.6286' Avg. expression score in LCM sample: '19.0926' Tissue used: 'full endosperm' |
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| AT1G22960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 3 | 80.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G22950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '144.714' Avg. expression score in LCM sample: '25.8095' Tissue used: 'full endosperm' |
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| AT1G22950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '104.292' Avg. expression score in LCM sample: '25.8095' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G22950 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G22950 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '197.466' Avg. embryo expression (LCM): '172.14' |
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| AT1G22940 | TH1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '31.6065' Avg. embryo expression (LCM): '23.472' |
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| AT1G22940 | TH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22940 | TH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '22.8778' Avg. expression score in LCM sample: '11.6554' Tissue used: 'full endosperm' |
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| AT1G22940 | TH1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22940 | TH1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22940 | TH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '17.2627' Avg. expression score in LCM sample: '11.6554' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.37917 x 10-1 | 17 | 7 | 8 | 24 | 70.83% | 75.00% | 24 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.2e-11' Avg. expression score for this sample: '524.25' Avg. expression score in LCM sample: '102.959' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.17278 x 10-1 | 94 | 9 | 91.26% | 103 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22930 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.2 x 10-10 | 228 | 3 | 98.70% | 231 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22930 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.22393 x 10-1 | 5 | 8 | 2 | 1 | 38.46% | 33.33% | 13 | 3 | TAIR8 |
Avg. embryo expression (dissected): '221.68' Avg. embryo expression (LCM): '66.7237' |
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| AT1G22930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.1661 x 10-2 | 47 | 2 | 95.92% | 49 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2 x 10-12 | 141 | 26 | 34 | 245 | 84.43% | 87.81% | 167 | 279 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.2e-11' Avg. expression score for this sample: '1766.5' Avg. expression score in LCM sample: '102.959' Tissue used: 'full endosperm' |
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| AT1G22920 | CSN5A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.6048 x 10-2 | 36 | 12 | 13 | 65 | 75.00% | 83.33% | 48 | 78 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.076725' Avg. expression score for this sample: '62.3438' Avg. expression score in LCM sample: '47.5184' Tissue used: 'full endosperm' |
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| AT1G22920 | CSN5A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.965 x 10-3 | 20 | 0 | 100.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G22920 | CSN5A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.0543 x 10-2 | 216 | 106 | 67.08% | 322 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G22920 | CSN5A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 25 | 17 | 7 | 21 | 59.52% | 75.00% | 42 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.076725' Avg. expression score for this sample: '63.106' Avg. expression score in LCM sample: '47.5184' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22920 | CSN5A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.60831 x 10-1 | 28 | 27 | 4 | 6 | 50.91% | 60.00% | 55 | 10 | TAIR8 |
Avg. embryo expression (dissected): '70.1586' Avg. embryo expression (LCM): '78.4911' |
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| AT1G22920 | CSN5A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.40616 x 10-1 | 199 | 61 | 76.54% | 260 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G22910 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.13713 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22910 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.65569 x 10-1 | 31 | 25 | 17 | 17 | 55.36% | 50.00% | 56 | 34 | TAIR8 |
Avg. embryo expression (dissected): '144.291' Avg. embryo expression (LCM): '62.4538' |
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| AT1G22910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.08929 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 1 | 3 | 100.00% | 75.00% | 1 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.63626' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G22910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 3 | 1 | 2 | 40.00% | 66.67% | 5 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '6.86782' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.1' Avg. expression score for this sample: '.606182' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22900 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.343169' Avg. embryo expression (LCM): '0' |
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| AT1G22900 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.1 | 7 | 0 | 0 | 1 | 100.00% | 100.00% | 7 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.1' Avg. expression score for this sample: '2.53373' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G22900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G22890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G22890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4.04931' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G22890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.76944' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G22890 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G22890 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G22885 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G22885 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22885 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.44444 x 10-1 | 3 | 0 | 0 | 2 | 100.00% | 100.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '7.15952' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G22885 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G22885 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G22885 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22882 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.49217 x 10-1 | 56 | 9 | 86.15% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22882 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.017 x 10-3 | 200 | 5 | 97.56% | 205 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22882 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.80172 x 10-1 | 3 | 7 | 0 | 1 | 30.00% | 100.00% | 10 | 1 | TAIR8 |
Avg. embryo expression (dissected): '246.02' Avg. embryo expression (LCM): '170.42' |
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| AT1G22882 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.70622 x 10-1 | 19 | 0 | 3 | 3 | 100.00% | 50.00% | 19 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000055' Avg. expression score for this sample: '250.384' Avg. expression score in LCM sample: '31.7622' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22882 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.23967 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G22882 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.37 x 10-4 | 39 | 3 | 8 | 45 | 92.86% | 84.91% | 42 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000055' Avg. expression score for this sample: '593.911' Avg. expression score in LCM sample: '31.7622' Tissue used: 'full endosperm' |
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| AT1G22880 | CEL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.05957 x 10-1 | 59 | 9 | 23 | 45 | 86.76% | 66.18% | 68 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.062208' Avg. expression score for this sample: '18.0657' Avg. expression score in LCM sample: '3.11596' Tissue used: 'full endosperm' |
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| AT1G22880 | CEL5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.4968 x 10-2 | 16 | 0 | 100.00% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G22880 | CEL5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.1685 x 10-1 | 36 | 6 | 85.71% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G22880 | CEL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.33684 x 10-1 | 16 | 9 | 2 | 15 | 64.00% | 88.24% | 25 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.062208' Avg. expression score for this sample: '8.87982' Avg. expression score in LCM sample: '3.11596' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G22880 | CEL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.95269 x 10-1 | 116 | 31 | 78.91% | 147 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G22880 | CEL5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.6586 | 11 | 16 | 7 | 7 | 40.74% | 50.00% | 27 | 14 | TAIR8 |
Avg. embryo expression (dissected): '11.8446' Avg. embryo expression (LCM): '19.9556' |