| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G24450 | NFD2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.05 x 10-4 | 63 | 6 | 91.30% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G24450 | NFD2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.34979 x 10-1 | 35 | 31 | 5 | 9 | 53.03% | 64.29% | 66 | 14 | TAIR8 |
Avg. embryo expression (dissected): '138.322' Avg. embryo expression (LCM): '156.794' |
|||
| AT1G24450 | NFD2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.2 x 10-16 | 122 | 1 | 99.19% | 123 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G24450 | NFD2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 69 | 31 | 35 | 63 | 69.00% | 64.29% | 100 | 98 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.110025' Avg. expression score for this sample: '213.646' Avg. expression score in LCM sample: '149.978' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G24440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 2 | 1 | 3 | 66.67% | 75.00% | 6 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.604715' Avg. expression score for this sample: '54.6763' Avg. expression score in LCM sample: '40.8308' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G24440 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.29214 x 10-1 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.8194 x 10-2 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.8084 x 10-1 | 6 | 2 | 4 | 14 | 75.00% | 77.78% | 8 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.604715' Avg. expression score for this sample: '84.6303' Avg. expression score in LCM sample: '40.8308' Tissue used: 'full endosperm' |
|||||
| AT1G24440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.11992 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24440 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 3 | 1 | 1 | 50.00% | 50.00% | 6 | 2 | TAIR8 |
Avg. embryo expression (dissected): '81.9518' Avg. embryo expression (LCM): '39.8735' |
||||
| AT1G24430 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G24430 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.018404' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G24430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.8404 x 10-2 | 1 | 0 | 0 | 16 | 100.00% | 100.00% | 1 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.018404' Avg. expression score for this sample: '22.931' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G24430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.2 | 0 | 4 | 0.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.276226' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT1G24420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24420 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G24420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.198859' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G24420 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24405 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24405 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G24405 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24405 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.51627' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G24405 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24405 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G24400 | LHT2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT1G24400 | LHT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.6075 x 10-2 | 0 | 10 | 0 | 2 | 0.00% | 100.00% | 10 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.05021' Avg. expression score for this sample: '3.10754' Avg. expression score in LCM sample: '6.74634' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G24400 | LHT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.59 x 10-3 | 223 | 99 | 69.25% | 322 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G24400 | LHT2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.9381 x 10-2 | 100 | 84 | 54.35% | 184 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G24400 | LHT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 2 | 1 | 2 | 50.00% | 66.67% | 4 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.05021' Avg. expression score for this sample: '1.9505' Avg. expression score in LCM sample: '6.74634' Tissue used: 'full endosperm' |
||||
| AT1G24400 | LHT2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.17 x 10-4 | 36 | 0 | 100.00% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.29602 x 10-1 | 0 | 23 | 2 | 82 | 0.00% | 97.62% | 23 | 84 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.140293' Avg. expression score for this sample: '161.948' Avg. expression score in LCM sample: '64.7443' Tissue used: 'full endosperm' |
|||||
| AT1G24390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.8 x 10-10 | 167 | 3 | 98.24% | 170 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.82057 x 10-1 | 0 | 20 | 0 | 9 | 0.00% | 100.00% | 20 | 9 | TAIR8 |
Avg. embryo expression (dissected): '161.346' Avg. embryo expression (LCM): '414.935' |
||||
| AT1G24390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.7 x 10-9 | 0 | 16 | 0.00% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 8 | 0 | 18 | 0.00% | 100.00% | 8 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.140293' Avg. expression score for this sample: '66.1643' Avg. expression score in LCM sample: '64.7443' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G24388 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.30386 x 10-1 | 0 | 35 | 0 | 51 | 0.00% | 100.00% | 35 | 51 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.010595' Avg. expression score for this sample: '496.172' Avg. expression score in LCM sample: '186.311' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G24388 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 70 | 0.00% | 70 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24388 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 429 | 0 | 100.00% | 429 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24388 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.79 x 10-4 | 1 | 64 | 2 | 251 | 1.54% | 99.21% | 65 | 253 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.010595' Avg. expression score for this sample: '1046.72' Avg. expression score in LCM sample: '186.311' Tissue used: 'full endosperm' |
|||||
| AT1G24388 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.9 x 10-6 | 45 | 0 | 100.00% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24388 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.503 x 10-3 | 1 | 92 | 0 | 43 | 1.08% | 100.00% | 93 | 43 | TAIR8 |
Avg. embryo expression (dissected): '1605.03' Avg. embryo expression (LCM): '2688.6' |
||||
| AT1G24380 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.20036' Avg. embryo expression (LCM): '0' |
|||||
| AT1G24380 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G24380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.374592' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G24380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.0 x 10-7 | 266 | 68 | 79.64% | 334 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.81988 x 10-1 | 970 | 662 | 772 | 1991 | 59.44% | 72.06% | 1632 | 2763 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.952988' Avg. expression score for this sample: '600.529' Avg. expression score in LCM sample: '245.676' Tissue used: 'full endosperm' |
|||||
| AT1G24360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.42258 x 10-1 | 300 | 135 | 68.97% | 435 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24360 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.0225 | 929 | 1126 | 122 | 162 | 45.21% | 57.04% | 2055 | 284 | TAIR8 |
Avg. embryo expression (dissected): '875.825' Avg. embryo expression (LCM): '1937.4' |
||||
| AT1G24360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.80944 x 10-1 | 465 | 324 | 187 | 452 | 58.94% | 70.74% | 789 | 639 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.952988' Avg. expression score for this sample: '372.678' Avg. expression score in LCM sample: '245.676' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G24360 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.3 x 10-8 | 366 | 99 | 78.71% | 465 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-28 | 457 | 16 | 96.62% | 473 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.0076 x 10-2 | 58 | 9 | 22 | 46 | 86.57% | 67.65% | 67 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.058971' Avg. expression score for this sample: '109.019' Avg. expression score in LCM sample: '82.0438' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G24350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.24238 x 10-1 | 19 | 10 | 65.52% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.75999 x 10-1 | 144 | 56 | 57 | 126 | 72.00% | 68.85% | 200 | 183 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.058971' Avg. expression score for this sample: '133.588' Avg. expression score in LCM sample: '82.0438' Tissue used: 'full endosperm' |
|||||
| AT1G24350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.99094 x 10-1 | 191 | 70 | 73.18% | 261 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 42 | 36 | 17 | 10 | 53.85% | 37.04% | 78 | 27 | TAIR8 |
Avg. embryo expression (dissected): '118.301' Avg. embryo expression (LCM): '95.1438' |
||||
| AT1G24340 | EMB2421 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.699 x 10-3 | 218 | 104 | 56 | 25 | 67.70% | 30.86% | 322 | 81 | TAIR8 |
Avg. embryo expression (dissected): '62.0454' Avg. embryo expression (LCM): '42.5987' |
|||
| AT1G24340 | EMB2421 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.781 x 10-3 | 135 | 63 | 96 | 70 | 68.18% | 42.17% | 198 | 166 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.74317' Avg. expression score for this sample: '39.265' Avg. expression score in LCM sample: '15.0213' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G24340 | EMB2421 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 657 | 61 | 91.50% | 718 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G24340 | EMB2421 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.51675 x 10-1 | 277 | 169 | 62.11% | 446 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G24340 | EMB2421 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.88255 x 10-1 | 429 | 130 | 165 | 246 | 76.74% | 59.85% | 559 | 411 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.74317' Avg. expression score for this sample: '66.3287' Avg. expression score in LCM sample: '15.0213' Tissue used: 'full endosperm' |
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| AT1G24340 | EMB2421 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.07718 x 10-1 | 57 | 30 | 65.52% | 87 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G24330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.73134 x 10-1 | 4 | 6 | 40.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.58272 x 10-1 | 17 | 3 | 22 | 27 | 85.00% | 55.10% | 20 | 49 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.802469' Avg. expression score for this sample: '15.0204' Avg. expression score in LCM sample: '4.45347' Tissue used: 'full endosperm' |
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| AT1G24330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.54234 x 10-1 | 133 | 82 | 61.86% | 215 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24330 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 3 | 1 | 1 | 50.00% | 50.00% | 6 | 2 | TAIR8 |
Avg. embryo expression (dissected): '6.61317' Avg. embryo expression (LCM): '4.88529' |
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| AT1G24330 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.8476 x 10-2 | 140 | 42 | 76.92% | 182 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 31 | 6 | 19 | 17 | 83.78% | 47.22% | 37 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.802469' Avg. expression score for this sample: '23.6148' Avg. expression score in LCM sample: '4.45347' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G24320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.718932' Avg. expression score in LCM sample: '.587917' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G24320 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 3 | 72.73% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 9 | 40.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.960445' Avg. expression score in LCM sample: '.587917' Tissue used: 'full endosperm' |
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| AT1G24320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24320 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.88185' Avg. embryo expression (LCM): '7.00769' |
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| AT1G24310 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '324.486' Avg. embryo expression (LCM): '323.71' |
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| AT1G24310 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '174.855' Avg. expression score in LCM sample: '70.4177' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G24310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '148.429' Avg. expression score in LCM sample: '70.4177' Tissue used: 'full endosperm' |
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| AT1G24310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G24300 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-5 | 137 | 13 | 91.33% | 150 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24300 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.836 x 10-3 | 58 | 26 | 41 | 170 | 69.05% | 80.57% | 84 | 211 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01945' Avg. expression score for this sample: '269.192' Avg. expression score in LCM sample: '143.128' Tissue used: 'full endosperm' |
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| AT1G24300 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.01507 x 10-1 | 24 | 5 | 82.76% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24300 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.82745 x 10-1 | 12 | 17 | 9 | 9 | 41.38% | 50.00% | 29 | 18 | TAIR8 |
Avg. embryo expression (dissected): '409.053' Avg. embryo expression (LCM): '178.307' |
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| AT1G24300 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 17 | 10 | 41 | 37.04% | 80.39% | 27 | 51 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01945' Avg. expression score for this sample: '450.126' Avg. expression score in LCM sample: '143.128' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G24300 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.561 x 10-3 | 157 | 28 | 84.86% | 185 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24290 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.87532 x 10-1 | 23 | 11 | 67.65% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.91355 x 10-1 | 7 | 11 | 0 | 1 | 38.89% | 100.00% | 18 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.524736' Avg. expression score for this sample: '28.5765' Avg. expression score in LCM sample: '30.6892' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G24290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.96429 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 10 | 4 | 5 | 9 | 71.43% | 64.29% | 14 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.524736' Avg. expression score for this sample: '25.5571' Avg. expression score in LCM sample: '30.6892' Tissue used: 'full endosperm' |
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| AT1G24290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.588 x 10-2 | 14 | 2 | 87.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G24290 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.08392 x 10-1 | 0 | 5 | 1 | 2 | 0.00% | 66.67% | 5 | 3 | TAIR8 |
Avg. embryo expression (dissected): '54.1346' Avg. embryo expression (LCM): '61.6626' |