| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G25550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.3897 x 10-2 | 38 | 4 | 90.48% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.4481 x 10-2 | 38 | 24 | 22 | 107 | 61.29% | 82.95% | 62 | 129 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.013154' Avg. expression score for this sample: '129.355' Avg. expression score in LCM sample: '136.206' Tissue used: 'full endosperm' |
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| AT1G25550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.6989 x 10-2 | 16 | 0 | 100.00% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.76111 x 10-1 | 37 | 15 | 71.15% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 3 | 0 | 3 | 25.00% | 100.00% | 4 | 3 | TAIR8 |
Avg. embryo expression (dissected): '29.1566' Avg. embryo expression (LCM): '7.22118' |
||||
| AT1G25550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.49043 x 10-1 | 15 | 10 | 2 | 34 | 60.00% | 94.44% | 25 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.013154' Avg. expression score for this sample: '206.294' Avg. expression score in LCM sample: '136.206' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G25540 | PFT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.06248 x 10-1 | 17 | 8 | 4 | 28 | 68.00% | 87.50% | 25 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001921' Avg. expression score for this sample: '399.385' Avg. expression score in LCM sample: '63.8771' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G25540 | PFT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.04827 x 10-1 | 29 | 5 | 85.29% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25540 | PFT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.9902 x 10-2 | 118 | 42 | 73.75% | 160 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25540 | PFT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.025 x 10-3 | 34 | 7 | 9 | 49 | 82.93% | 84.48% | 41 | 58 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001921' Avg. expression score for this sample: '157.167' Avg. expression score in LCM sample: '63.8771' Tissue used: 'full endosperm' |
||||
| AT1G25540 | PFT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 5 | 1 | 2 | 44.44% | 66.67% | 9 | 3 | TAIR8 |
Avg. embryo expression (dissected): '257.904' Avg. embryo expression (LCM): '69.0596' |
|||
| AT1G25540 | PFT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.9254 x 10-2 | 150 | 18 | 89.29% | 168 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25530 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.95901 x 10-1 | 2 | 3 | 40.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25530 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.71159 x 10-1 | 30 | 33 | 6 | 6 | 47.62% | 50.00% | 63 | 12 | TAIR8 |
Avg. embryo expression (dissected): '273.404' Avg. embryo expression (LCM): '151.23' |
||||
| AT1G25530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 2 | 6 | 10 | 75.00% | 62.50% | 8 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.412338' Avg. expression score for this sample: '71.3114' Avg. expression score in LCM sample: '10.7736' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G25530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.4279 | 17 | 12 | 11 | 14 | 58.62% | 56.00% | 29 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.412338' Avg. expression score for this sample: '128.813' Avg. expression score in LCM sample: '10.7736' Tissue used: 'full endosperm' |
|||||
| AT1G25530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.0444 x 10-2 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G25520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '33.2322' Avg. expression score in LCM sample: '3.76267' Tissue used: 'full endosperm' |
|||||||
| AT1G25520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G25520 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '7.85741' Avg. embryo expression (LCM): '10.725' |
||||||
| AT1G25520 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G25520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '7.05945' Avg. expression score in LCM sample: '3.76267' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G25510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 2 | 0 | 0 | 71.43% | 7 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.569956' Avg. expression score for this sample: '66.5588' Avg. expression score in LCM sample: '13.2722' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G25510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.7091 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.17082 x 10-1 | 14 | 1 | 4 | 5 | 93.33% | 55.56% | 15 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.569956' Avg. expression score for this sample: '85.5404' Avg. expression score in LCM sample: '13.2722' Tissue used: 'full endosperm' |
|||||
| AT1G25510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.62032 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 5 | 2 | 1 | 44.44% | 33.33% | 9 | 3 | TAIR8 |
Avg. embryo expression (dissected): '126.082' Avg. embryo expression (LCM): '71.7848' |
||||
| AT1G25500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 0 | 4 | 0 | 0 | 0.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '49.4289' Avg. embryo expression (LCM): '46.9063' |
|||||
| AT1G25500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.0384 x 10-2 | 23 | 0 | 100.00% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 2 | 1 | 4 | 75.00% | 80.00% | 8 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.450839' Avg. expression score for this sample: '127.381' Avg. expression score in LCM sample: '192.528' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G25500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.8084 x 10-1 | 7 | 2 | 4 | 13 | 77.78% | 76.47% | 9 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.450839' Avg. expression score for this sample: '56.4103' Avg. expression score in LCM sample: '192.528' Tissue used: 'full endosperm' |
|||||
| AT1G25500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.6482 x 10-2 | 29 | 2 | 93.55% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25490 | RCN1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25490 | RCN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '250.199' Avg. expression score in LCM sample: '251.628' Tissue used: 'full endosperm' |
||||||
| AT1G25490 | RCN1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25490 | RCN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25490 | RCN1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '269.047' Avg. embryo expression (LCM): '258.719' |
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| AT1G25490 | RCN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '184.985' Avg. expression score in LCM sample: '251.628' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G25480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '69.0327' Avg. expression score in LCM sample: '13.4192' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G25480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.25 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 0 | 1 | 3 | 100.00% | 75.00% | 3 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '157.06' Avg. expression score in LCM sample: '13.4192' Tissue used: 'full endosperm' |
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| AT1G25480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '59.0285' Avg. embryo expression (LCM): '25.9837' |
|||||
| AT1G25480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25472 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.353 x 10-3 | 48 | 0 | 100.00% | 48 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25472 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4029.46' Avg. embryo expression (LCM): '3363.9' |
|||||
| AT1G25472 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 1 | 4 | 50.00% | 80.00% | 2 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.212238' Avg. expression score for this sample: '2887.24' Avg. expression score in LCM sample: '2572.14' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G25472 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.62434 x 10-1 | 19 | 4 | 2 | 9 | 82.61% | 81.82% | 23 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.212238' Avg. expression score for this sample: '5349.04' Avg. expression score in LCM sample: '2572.14' Tissue used: 'full endosperm' |
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| AT1G25472 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G25472 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.68974 x 10-1 | 7 | 3 | 70.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25470 | CRF12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25470 | CRF12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 2 | 1 | 6 | 60.00% | 85.71% | 5 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3113.68' Avg. expression score in LCM sample: '1732.25' Tissue used: 'full endosperm' |
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| AT1G25470 | CRF12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1320.36' Avg. expression score in LCM sample: '1732.25' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G25470 | CRF12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25470 | CRF12 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1971.93' Avg. embryo expression (LCM): '2511.72' |
|||||
| AT1G25470 | CRF12 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.29249 x 10-1 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G25460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G25460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G25460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G25460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.77587' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G25460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.803806' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G25450 | KCS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.24 x 10-4 | 9 | 3 | 4 | 63 | 75.00% | 94.03% | 12 | 67 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.2e-10' Avg. expression score for this sample: '29.8363' Avg. expression score in LCM sample: '1.64617' Tissue used: 'full endosperm' |
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| AT1G25450 | KCS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.1 x 10-7 | 19 | 1 | 0 | 50 | 95.00% | 100.00% | 20 | 50 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.2e-10' Avg. expression score for this sample: '37.3634' Avg. expression score in LCM sample: '1.64617' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G25450 | KCS5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.54216 x 10-1 | 31 | 0 | 100.00% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25450 | KCS5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-6 | 627 | 0 | 100.00% | 627 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25450 | KCS5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.4162 x 10-2 | 41 | 25 | 4 | 16 | 62.12% | 80.00% | 66 | 20 | TAIR8 |
Avg. embryo expression (dissected): '76.0466' Avg. embryo expression (LCM): '27.4907' |
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| AT1G25450 | KCS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.724 x 10-3 | 1093 | 13 | 98.82% | 1106 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25440 | BBX15 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.6642 x 10-2 | 12 | 2 | 85.71% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25440 | BBX15 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.82392 x 10-1 | 29 | 30 | 28 | 19 | 49.15% | 40.43% | 59 | 47 | TAIR8 |
Avg. embryo expression (dissected): '563.123' Avg. embryo expression (LCM): '127.796' |
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| AT1G25440 | BBX15 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.99494 x 10-1 | 12 | 6 | 66.67% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25440 | BBX15 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 25 | 5 | 12 | 10 | 83.33% | 45.45% | 30 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.464442' Avg. expression score for this sample: '214.697' Avg. expression score in LCM sample: '63.201' Tissue used: 'full endosperm' |
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| AT1G25440 | BBX15 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.90922 x 10-1 | 44 | 23 | 16 | 11 | 65.67% | 40.74% | 67 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.464442' Avg. expression score for this sample: '271.353' Avg. expression score in LCM sample: '63.201' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G25440 | BBX15 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.40496 x 10-1 | 2 | 2 | 50.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25425 | CLE43 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25425 | CLE43 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25425 | CLE43 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G25425 | CLE43 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G25425 | CLE43 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.920197' Avg. embryo expression (LCM): '1.98426' |
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| AT1G25425 | CLE43 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25420 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.59341 x 10-1 | 17 | 0 | 100.00% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25420 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '23.3864' Avg. embryo expression (LCM): '40.5768' |
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| AT1G25420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.01075 x 10-1 | 19 | 3 | 0 | 6 | 86.36% | 100.00% | 22 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.092779' Avg. expression score for this sample: '58.3204' Avg. expression score in LCM sample: '26.0006' Tissue used: 'full endosperm' |
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| AT1G25420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 2 | 5 | 71.43% | 0 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.092779' Avg. expression score for this sample: '34.5938' Avg. expression score in LCM sample: '26.0006' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G25420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.18783 x 10-1 | 7 | 2 | 77.78% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25410 | IPT6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.0872 x 10-2 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25410 | IPT6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.70813 x 10-1 | 4594 | 2884 | 1436 | 3735 | 61.43% | 72.23% | 7478 | 5171 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.02496' Avg. expression score for this sample: '10506.6' Avg. expression score in LCM sample: '313.124' Tissue used: 'full endosperm' |
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| AT1G25410 | IPT6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.9825 x 10-2 | 1913 | 1151 | 955 | 1991 | 62.43% | 67.58% | 3064 | 2946 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.02496' Avg. expression score for this sample: '7519.09' Avg. expression score in LCM sample: '313.124' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G25410 | IPT6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.3 x 10-15 | 1662 | 591 | 73.77% | 2253 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25410 | IPT6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.78317 x 10-1 | 19 | 20 | 7 | 18 | 48.72% | 72.00% | 39 | 25 | TAIR8 |
Avg. embryo expression (dissected): '146.228' Avg. embryo expression (LCM): '0' |
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| AT1G25410 | IPT6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.52723 x 10-1 | 6 | 7 | 46.15% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G25400 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.26 x 10-4 | 103 | 6 | 94.50% | 109 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25400 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 2 | 0 | 0 | 33.33% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '38.1078' Avg. embryo expression (LCM): '1.98426' |
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| AT1G25400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.48853 x 10-1 | 14 | 5 | 73.68% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G25400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.10561 x 10-1 | 18 | 1 | 94.74% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |