| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G28420 | HB-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.4614 x 10-2 | 378 | 201 | 133 | 443 | 65.28% | 76.91% | 579 | 576 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.0e-09' Avg. expression score for this sample: '1251.3' Avg. expression score in LCM sample: '215.369' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G28420 | HB-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.0 x 10-28 | 1776 | 283 | 86.26% | 2059 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28420 | HB-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.1 x 10-8 | 509 | 234 | 215 | 857 | 68.51% | 79.94% | 743 | 1072 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.0e-09' Avg. expression score for this sample: '1109.35' Avg. expression score in LCM sample: '215.369' Tissue used: 'full endosperm' |
||||
| AT1G28420 | HB-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-6 | 1921 | 504 | 79.22% | 2425 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.15582 x 10-1 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 7 | 3 | 1 | 3 | 70.00% | 75.00% | 10 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.644334' Avg. expression score for this sample: '16.3209' Avg. expression score in LCM sample: '10.3032' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G28410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28410 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 3 | 0 | 1 | 57.14% | 100.00% | 7 | 1 | TAIR8 |
Avg. embryo expression (dissected): '18.0728' Avg. embryo expression (LCM): '14.9698' |
||||
| AT1G28410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.78716 x 10-1 | 17 | 4 | 4 | 5 | 80.95% | 55.56% | 21 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.644334' Avg. expression score for this sample: '32.6969' Avg. expression score in LCM sample: '10.3032' Tissue used: 'full endosperm' |
|||||
| AT1G28410 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.8577 x 10-1 | 6 | 5 | 54.55% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28400 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2831 x 10-2 | 89 | 1 | 98.89% | 90 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4 x 10-5 | 3 | 2 | 7 | 93 | 60.00% | 93.00% | 5 | 100 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.6e-06' Avg. expression score for this sample: '142.057' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G28400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.96056 x 10-1 | 14 | 0 | 100.00% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28400 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.72482 x 10-1 | 7 | 5 | 5 | 7 | 58.33% | 58.33% | 12 | 12 | TAIR8 |
Avg. embryo expression (dissected): '96.8069' Avg. embryo expression (LCM): '73.9826' |
||||
| AT1G28400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.6e-06' Avg. expression score for this sample: '6.42167' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G28400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28395 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28395 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '61.8968' Avg. embryo expression (LCM): '22.5175' |
||||||
| AT1G28395 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '10.808' Avg. expression score in LCM sample: '2.92489' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G28395 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '6.9334' Avg. expression score in LCM sample: '2.92489' Tissue used: 'full endosperm' |
|||||||
| AT1G28395 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28395 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.873 x 10-3 | 0 | 5 | 0.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.37136 x 10-1 | 13 | 8 | 8 | 9 | 61.90% | 52.94% | 21 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.732816' Avg. expression score for this sample: '14.4789' Avg. expression score in LCM sample: '2.66032' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G28390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.04615 x 10-1 | 6 | 2 | 75.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.90856 x 10-1 | 22 | 12 | 5 | 4 | 64.71% | 44.44% | 34 | 9 | TAIR8 |
Avg. embryo expression (dissected): '34.0333' Avg. embryo expression (LCM): '35.6036' |
||||
| AT1G28390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.7949 x 10-2 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 9 | 2 | 10 | 16 | 81.82% | 61.54% | 11 | 26 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.732816' Avg. expression score for this sample: '11.3526' Avg. expression score in LCM sample: '2.66032' Tissue used: 'full endosperm' |
|||||
| AT1G28380 | NSL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.181 x 10-3 | 60 | 15 | 34 | 112 | 80.00% | 76.71% | 75 | 146 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.019075' Avg. expression score for this sample: '276.46' Avg. expression score in LCM sample: '48.2092' Tissue used: 'full endosperm' |
||||
| AT1G28380 | NSL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-5 | 328 | 39 | 89.37% | 367 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28380 | NSL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.1537 x 10-1 | 109 | 29 | 78.99% | 138 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28380 | NSL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.06839 x 10-1 | 31 | 18 | 4 | 11 | 63.27% | 73.33% | 49 | 15 | TAIR8 |
Avg. embryo expression (dissected): '234.501' Avg. embryo expression (LCM): '91.5395' |
|||
| AT1G28380 | NSL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 3 | 9 | 14 | 78.57% | 60.87% | 14 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.019075' Avg. expression score for this sample: '118.057' Avg. expression score in LCM sample: '48.2092' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G28380 | NSL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.25523 x 10-1 | 18 | 3 | 85.71% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28375 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28375 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G28375 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.402013' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G28375 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28375 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.257915' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G28375 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28370 | ERF11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.18819 x 10-1 | 61 | 23 | 72.62% | 84 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28370 | ERF11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.85694' Avg. expression score in LCM sample: '3.02777' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G28370 | ERF11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28370 | ERF11 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 2 | 0 | 0 | 50.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '7.04551' Avg. embryo expression (LCM): '11.6418' |
||||
| AT1G28370 | ERF11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 1 | 2 | 66.67% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.38398' Avg. expression score in LCM sample: '3.02777' Tissue used: 'full endosperm' |
|||||
| AT1G28370 | ERF11 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 26 | 20 | 56.52% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28360 | ERF12 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28360 | ERF12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '52.1043' Avg. expression score in LCM sample: '3.29233' Tissue used: 'full endosperm' |
|||||
| AT1G28360 | ERF12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28360 | ERF12 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '493.378' Avg. embryo expression (LCM): '295.993' |
||||
| AT1G28360 | ERF12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '59.2572' Avg. expression score in LCM sample: '3.29233' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G28360 | ERF12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.22894 x 10-1 | 7 | 3 | 70.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 12 | 10 | 2 | 1 | 54.55% | 33.33% | 22 | 3 | TAIR8 |
Avg. embryo expression (dissected): '57.7874' Avg. embryo expression (LCM): '63.8227' |
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| AT1G28350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 3 | 0 | 2 | 72.73% | 100.00% | 11 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.388501' Avg. expression score for this sample: '18.7553' Avg. expression score in LCM sample: '11.7877' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G28350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.71475 x 10-1 | 24 | 6 | 12 | 25 | 80.00% | 67.57% | 30 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.388501' Avg. expression score for this sample: '37.2249' Avg. expression score in LCM sample: '11.7877' Tissue used: 'full endosperm' |
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| AT1G28350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.14868 x 10-1 | 39 | 6 | 86.67% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.93588 x 10-1 | 36 | 15 | 70.59% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28340 | RLP4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.09317 x 10-1 | 17 | 2 | 89.47% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28340 | RLP4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.54592 x 10-1 | 37 | 21 | 8 | 40 | 63.79% | 83.33% | 58 | 48 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.484127' Avg. expression score for this sample: '147.77' Avg. expression score in LCM sample: '67.7574' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G28340 | RLP4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0044 | 18 | 0 | 100.00% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28340 | RLP4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.42415 x 10-1 | 35 | 32 | 5 | 13 | 52.24% | 72.22% | 67 | 18 | TAIR8 |
Avg. embryo expression (dissected): '242.527' Avg. embryo expression (LCM): '105.379' |
|||
| AT1G28340 | RLP4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.29 x 10-4 | 49 | 4 | 92.45% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28340 | RLP4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.8931 | 50 | 24 | 16 | 36 | 67.57% | 69.23% | 74 | 52 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.484127' Avg. expression score for this sample: '171.564' Avg. expression score in LCM sample: '67.7574' Tissue used: 'full endosperm' |
||||
| AT1G28335 | LCR31 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT1G28335 | LCR31 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28335 | LCR31 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28335 | LCR31 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G28335 | LCR31 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.54843' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G28335 | LCR31 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28330 | DYL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.54455 x 10-1 | 9 | 1 | 90.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28330 | DYL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 22 | 22 | 3 | 1 | 50.00% | 25.00% | 44 | 4 | TAIR8 |
Avg. embryo expression (dissected): '458.448' Avg. embryo expression (LCM): '25.5316' |
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| AT1G28330 | DYL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.85082 x 10-1 | 7 | 3 | 0 | 6 | 70.00% | 100.00% | 10 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.6e-07' Avg. expression score for this sample: '75.7616' Avg. expression score in LCM sample: '11.1998' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G28330 | DYL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.0793 x 10-2 | 27 | 5 | 84.38% | 32 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28330 | DYL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2 x 10-8 | 14 | 0 | 0 | 58 | 100.00% | 100.00% | 14 | 58 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.6e-07' Avg. expression score for this sample: '108.784' Avg. expression score in LCM sample: '11.1998' Tissue used: 'full endosperm' |
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| AT1G28330 | DYL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.67518 x 10-1 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28327 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28327 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.66084' Avg. expression score in LCM sample: '4.65924' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G28327 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28327 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.229867' Avg. embryo expression (LCM): '0' |
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| AT1G28327 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.804886' Avg. expression score in LCM sample: '4.65924' Tissue used: 'full endosperm' |
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| AT1G28327 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28320 | DEG15 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.709 x 10-3 | 168 | 94 | 64.12% | 262 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28320 | DEG15 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.88 x 10-4 | 55 | 40 | 27 | 203 | 57.89% | 88.26% | 95 | 230 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003969' Avg. expression score for this sample: '148.427' Avg. expression score in LCM sample: '43.0649' Tissue used: 'full endosperm' |
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| AT1G28320 | DEG15 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.7 x 10-11 | 331 | 28 | 92.20% | 359 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28320 | DEG15 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 24 | 44 | 11 | 89 | 35.29% | 89.00% | 68 | 100 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003969' Avg. expression score for this sample: '100.203' Avg. expression score in LCM sample: '43.0649' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G28320 | DEG15 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.163 x 10-2 | 30 | 71 | 11 | 16 | 29.70% | 59.26% | 101 | 27 | TAIR8 |
Avg. embryo expression (dissected): '124.786' Avg. embryo expression (LCM): '62.7175' |
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| AT1G28320 | DEG15 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.69 x 10-4 | 55 | 3 | 94.83% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G28310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28310 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.33213 x 10-1 | 7 | 6 | 0 | 6 | 53.85% | 100.00% | 13 | 6 | TAIR8 |
Avg. embryo expression (dissected): '31.5721' Avg. embryo expression (LCM): '38.4292' |
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| AT1G28310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 2 | 1 | 33.33% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.08441' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G28310 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.96429 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.36138' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G28310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.4965 x 10-2 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G28307 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28307 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G28307 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G28307 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28307 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G28307 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |