| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G30620 | MUR4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.5577 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30620 | MUR4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.20169 x 10-1 | 11 | 4 | 9 | 21 | 73.33% | 70.00% | 15 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.707048' Avg. expression score for this sample: '308.363' Avg. expression score in LCM sample: '207.99' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30620 | MUR4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 7 | 3 | 3 | 8 | 70.00% | 72.73% | 10 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.707048' Avg. expression score for this sample: '233.789' Avg. expression score in LCM sample: '207.99' Tissue used: 'full endosperm' |
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| AT1G30620 | MUR4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30620 | MUR4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 0 | 3 | 0 | 100.00% | 0.00% | 3 | 3 | TAIR8 |
Avg. embryo expression (dissected): '124.457' Avg. embryo expression (LCM): '96.3996' |
|||
| AT1G30620 | MUR4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.65363 x 10-1 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30610 | EMB2279 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30610 | EMB2279 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.91329 x 10-1 | 15 | 7 | 4 | 1 | 68.18% | 20.00% | 22 | 5 | TAIR8 |
Avg. embryo expression (dissected): '137.895' Avg. embryo expression (LCM): '105.869' |
|||
| AT1G30610 | EMB2279 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.06721 x 10-1 | 14 | 2 | 7 | 14 | 87.50% | 66.67% | 16 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.455041' Avg. expression score for this sample: '87.7481' Avg. expression score in LCM sample: '41.4628' Tissue used: 'full endosperm' |
||||
| AT1G30610 | EMB2279 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 16 | 2 | 7 | 6 | 88.89% | 46.15% | 18 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.455041' Avg. expression score for this sample: '65.4316' Avg. expression score in LCM sample: '41.4628' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G30610 | EMB2279 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.0508 x 10-2 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30610 | EMB2279 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.6591 x 10-2 | 1 | 4 | 20.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G30600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.72548 x 10-1 | 6 | 4 | 1 | 4 | 60.00% | 80.00% | 10 | 5 | TAIR8 |
Avg. embryo expression (dissected): '237.835' Avg. embryo expression (LCM): '167.18' |
||||
| AT1G30600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G30600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G30600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 0 | 1 | 50.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '25.1354' Avg. expression score in LCM sample: '5.70279' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G30600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 2 | 0 | 1 | 0.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '26.8207' Avg. expression score in LCM sample: '5.70279' Tissue used: 'full endosperm' |
|||||
| AT1G30590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.64087 x 10-1 | 13 | 13 | 5 | 15 | 50.00% | 75.00% | 26 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.690447' Avg. expression score for this sample: '137.961' Avg. expression score in LCM sample: '48.1945' Tissue used: 'full endosperm' |
|||||
| AT1G30590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 3 | 0 | 3 | 50.00% | 100.00% | 6 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.690447' Avg. expression score for this sample: '138.059' Avg. expression score in LCM sample: '48.1945' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G30590 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.136 x 10-3 | 17 | 1 | 94.44% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.35388 x 10-1 | 16 | 6 | 72.73% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30590 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 4 | 0 | 2 | 33.33% | 100.00% | 6 | 2 | TAIR8 |
Avg. embryo expression (dissected): '223.451' Avg. embryo expression (LCM): '149.359' |
||||
| AT1G30580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '693.051' Avg. embryo expression (LCM): '1065.48' |
||||||
| AT1G30580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G30580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G30580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '304.938' Avg. expression score in LCM sample: '152.05' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '475.889' Avg. expression score in LCM sample: '152.05' Tissue used: 'full endosperm' |
|||||||
| AT1G30580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G30570 | HERK2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.1552 x 10-1 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30570 | HERK2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.9 x 10-6 | 0 | 10 | 0.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30570 | HERK2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.89268 x 10-1 | 45 | 40 | 18 | 8 | 52.94% | 30.77% | 85 | 26 | TAIR8 |
Avg. embryo expression (dissected): '89.5499' Avg. embryo expression (LCM): '74.8868' |
|||
| AT1G30570 | HERK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.15446 x 10-1 | 86 | 22 | 46 | 44 | 79.63% | 48.89% | 108 | 90 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.485512' Avg. expression score for this sample: '84.9119' Avg. expression score in LCM sample: '43.2413' Tissue used: 'full endosperm' |
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| AT1G30570 | HERK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.2432 x 10-1 | 46 | 11 | 13 | 35 | 80.70% | 72.92% | 57 | 48 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.485512' Avg. expression score for this sample: '54.9135' Avg. expression score in LCM sample: '43.2413' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30570 | HERK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.7632 x 10-2 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30560 | G3Pp3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30560 | G3Pp3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.167373' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30560 | G3Pp3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 6 | 1 | 0 | 0 | 85.71% | 7 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.46075' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G30560 | G3Pp3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30560 | G3Pp3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30560 | G3Pp3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.189505' Avg. embryo expression (LCM): '0' |
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| AT1G30550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '5.97138' Avg. embryo expression (LCM): '10.5994' |
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| AT1G30550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.40405 x 10-1 | 3 | 1 | 1 | 7 | 75.00% | 87.50% | 4 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.685082' Avg. expression score for this sample: '3.56631' Avg. expression score in LCM sample: '1.13174' Tissue used: 'full endosperm' |
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| AT1G30550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 1 | 2 | 100.00% | 66.67% | 1 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.685082' Avg. expression score for this sample: '4.3762' Avg. expression score in LCM sample: '1.13174' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.0491 x 10-1 | 5 | 4 | 55.56% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.79508 x 10-1 | 59 | 25 | 70.24% | 84 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.0424 x 10-1 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 7 | 7 | 1 | 0 | 50.00% | 0.00% | 14 | 1 | TAIR8 |
Avg. embryo expression (dissected): '133.382' Avg. embryo expression (LCM): '75.3891' |
||||
| AT1G30540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.2 x 10-9 | 102 | 3 | 97.14% | 105 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.68813 x 10-1 | 4 | 4 | 6 | 11 | 50.00% | 64.71% | 8 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.789533' Avg. expression score for this sample: '106.812' Avg. expression score in LCM sample: '43.594' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.51691 x 10-1 | 18 | 17 | 13 | 55 | 51.43% | 80.88% | 35 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.789533' Avg. expression score for this sample: '51.2861' Avg. expression score in LCM sample: '43.594' Tissue used: 'full endosperm' |
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| AT1G30530 | UGT78D1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 1756 | 317 | 286 | 1621 | 84.71% | 85.00% | 2073 | 1907 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1057.74' Avg. expression score in LCM sample: '28.9549' Tissue used: 'full endosperm' |
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| AT1G30530 | UGT78D1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.0 x 10-24 | 1130 | 248 | 131 | 467 | 82.00% | 78.09% | 1378 | 598 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '541.695' Avg. expression score in LCM sample: '28.9549' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30530 | UGT78D1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 3990 | 45 | 98.88% | 4035 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30530 | UGT78D1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.19059 x 10-1 | 402 | 72 | 84.81% | 474 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30530 | UGT78D1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 2399 | 28 | 98.85% | 2427 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30530 | UGT78D1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.23224 x 10-1 | 1444 | 1430 | 421 | 495 | 50.24% | 54.04% | 2874 | 916 | TAIR8 |
Avg. embryo expression (dissected): '1719.83' Avg. embryo expression (LCM): '1042.76' |
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| AT1G30520 | AAE14 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.22393 x 10-1 | 7 | 3 | 3 | 3 | 70.00% | 50.00% | 10 | 6 | TAIR8 |
Avg. embryo expression (dissected): '120.56' Avg. embryo expression (LCM): '51.3771' |
|||
| AT1G30520 | AAE14 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30520 | AAE14 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 2 | 100.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '33.1975' Avg. expression score in LCM sample: '11.7142' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30520 | AAE14 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 2 | 0 | 0.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '18.7457' Avg. expression score in LCM sample: '11.7142' Tissue used: 'full endosperm' |
|||||
| AT1G30520 | AAE14 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30520 | AAE14 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30515 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30515 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G30515 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 6 | 0 | 1 | 33.33% | 100.00% | 9 | 1 | TAIR8 |
Avg. embryo expression (dissected): '118.597' Avg. embryo expression (LCM): '116.355' |
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| AT1G30515 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.82043 x 10-1 | 2 | 0 | 1 | 7 | 100.00% | 87.50% | 2 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.232547' Avg. expression score for this sample: '15.3035' Avg. expression score in LCM sample: '16.4323' Tissue used: 'full endosperm' |
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| AT1G30515 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 1 | 3 | 10 | 66.67% | 76.92% | 3 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.232547' Avg. expression score for this sample: '72.9273' Avg. expression score in LCM sample: '16.4323' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30515 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.22222 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30510 | RFNR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-8 | 267 | 35 | 88.41% | 302 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30510 | RFNR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.64277 x 10-1 | 141 | 130 | 83 | 267 | 52.03% | 76.29% | 271 | 350 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.6e-06' Avg. expression score for this sample: '121.689' Avg. expression score in LCM sample: '82.7934' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30510 | RFNR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.5 x 10-10 | 242 | 88 | 135 | 587 | 73.33% | 81.30% | 330 | 722 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.6e-06' Avg. expression score for this sample: '143.492' Avg. expression score in LCM sample: '82.7934' Tissue used: 'full endosperm' |
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| AT1G30510 | RFNR2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.281 x 10-3 | 321 | 79 | 80.25% | 400 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30510 | RFNR2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.87894 x 10-1 | 77 | 19 | 80.21% | 96 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30510 | RFNR2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.49743 x 10-1 | 161 | 210 | 26 | 40 | 43.40% | 60.61% | 371 | 66 | TAIR8 |
Avg. embryo expression (dissected): '129.097' Avg. embryo expression (LCM): '169.779' |
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| AT1G30500 | NF-YA7 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 6 | 3 | 6 | 3 | 66.67% | 33.33% | 9 | 9 | TAIR8 |
Avg. embryo expression (dissected): '8.55934' Avg. embryo expression (LCM): '3.96851' |
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| AT1G30500 | NF-YA7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.93518 x 10-1 | 53 | 11 | 11 | 18 | 82.81% | 62.07% | 64 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.337501' Avg. expression score for this sample: '21.4968' Avg. expression score in LCM sample: '3.10126' Tissue used: 'full endosperm' |
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| AT1G30500 | NF-YA7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 18 | 1 | 11 | 4 | 94.74% | 26.67% | 19 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.337501' Avg. expression score for this sample: '10.0724' Avg. expression score in LCM sample: '3.10126' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30500 | NF-YA7 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-7 | 68 | 0 | 100.00% | 68 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30500 | NF-YA7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 11 | 3 | 78.57% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30500 | NF-YA7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.6712 x 10-2 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30490 | PHV | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.103 x 10-3 | 44 | 7 | 86.27% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30490 | PHV | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.43538 x 10-1 | 20 | 10 | 66.67% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30490 | PHV | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.28065 x 10-1 | 86 | 65 | 19 | 11 | 56.95% | 36.67% | 151 | 30 | TAIR8 |
Avg. embryo expression (dissected): '173.496' Avg. embryo expression (LCM): '207.016' |
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| AT1G30490 | PHV | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.8 x 10-6 | 82 | 9 | 90.11% | 91 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G30490 | PHV | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.20711 x 10-1 | 86 | 49 | 25 | 69 | 63.70% | 73.40% | 135 | 94 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.523763' Avg. expression score for this sample: '148.418' Avg. expression score in LCM sample: '212.062' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30490 | PHV | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.29864 x 10-1 | 144 | 101 | 81 | 252 | 58.78% | 75.68% | 245 | 333 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.523763' Avg. expression score for this sample: '92.5254' Avg. expression score in LCM sample: '212.062' Tissue used: 'full endosperm' |
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| AT1G30480 | DRT111 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '356.276' Avg. expression score in LCM sample: '169.202' Tissue used: 'full endosperm' |
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| AT1G30480 | DRT111 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '634.87' Avg. expression score in LCM sample: '169.202' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30480 | DRT111 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30480 | DRT111 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30480 | DRT111 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G30480 | DRT111 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '658.554' Avg. embryo expression (LCM): '489.219' |
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| AT1G30475 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '29.6714' Avg. embryo expression (LCM): '81.6433' |
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| AT1G30475 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G30475 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '85.4083' Avg. expression score in LCM sample: '13.9042' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G30475 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '91.6185' Avg. expression score in LCM sample: '13.9042' Tissue used: 'full endosperm' |