| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G49600 | RBP47A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.08431 x 10-1 | 15 | 4 | 78.95% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49600 | RBP47A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.1284 x 10-1 | 15 | 33 | 14 | 49 | 31.25% | 77.78% | 48 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.364087' Avg. expression score for this sample: '196.713' Avg. expression score in LCM sample: '93.4934' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '120.637' Avg. expression score in LCM sample: '15.0948' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49590 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '116.577' Avg. embryo expression (LCM): '68.8084' |
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| AT1G49590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '144.82' Avg. expression score in LCM sample: '15.0948' Tissue used: 'full endosperm' |
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| AT1G49590 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 18 | 0 | 100.00% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.5553 x 10-2 | 156 | 1 | 99.36% | 157 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.7299 x 10-2 | 105 | 0 | 100.00% | 105 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.8572 x 10-2 | 17 | 3 | 0 | 11 | 85.00% | 100.00% | 20 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '8.3e-06' Avg. expression score for this sample: '130.899' Avg. expression score in LCM sample: '20.0627' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.0909 x 10-2 | 2 | 0 | 0 | 4 | 100.00% | 100.00% | 2 | 4 | TAIR8 |
Avg. embryo expression (dissected): '93.6391' Avg. embryo expression (LCM): '79.9856' |
||||
| AT1G49580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.3 x 10-5 | 33 | 0 | 0 | 9 | 100.00% | 100.00% | 33 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '8.3e-06' Avg. expression score for this sample: '239.651' Avg. expression score in LCM sample: '20.0627' Tissue used: 'full endosperm' |
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| AT1G49570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.9062 x 10-2 | 15 | 0 | 0 | 3 | 100.00% | 100.00% | 15 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001763' Avg. expression score for this sample: '6.47234' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G49570 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 54 | 0 | 100.00% | 54 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49570 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G49570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 17 | 0 | 100.00% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.02941 x 10-1 | 7 | 0 | 0 | 2 | 100.00% | 100.00% | 7 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001763' Avg. expression score for this sample: '2.71344' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.68582 x 10-1 | 3 | 1 | 0 | 11 | 75.00% | 100.00% | 4 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000976' Avg. expression score for this sample: '29.8551' Avg. expression score in LCM sample: '14.3893' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49560 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '12.2752' Avg. embryo expression (LCM): '7.02024' |
|||||
| AT1G49560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.39414 x 10-1 | 35 | 2 | 94.59% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.803 x 10-3 | 32 | 4 | 9 | 45 | 88.89% | 83.33% | 36 | 54 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000976' Avg. expression score for this sample: '73.5228' Avg. expression score in LCM sample: '14.3893' Tissue used: 'full endosperm' |
|||||
| AT1G49560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49560 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.06 x 10-3 | 89 | 2 | 97.80% | 91 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49540 | ELP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.47221 x 10-1 | 51 | 11 | 82.26% | 62 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49540 | ELP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.22674 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49540 | ELP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.7019 x 10-2 | 58 | 10 | 85.29% | 68 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49540 | ELP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.68502 x 10-1 | 23 | 10 | 4 | 15 | 69.70% | 78.95% | 33 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.479791' Avg. expression score for this sample: '16.7492' Avg. expression score in LCM sample: '14.3158' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49540 | ELP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.85961 x 10-1 | 41 | 56 | 9 | 7 | 42.27% | 43.75% | 97 | 16 | TAIR8 |
Avg. embryo expression (dissected): '43.7899' Avg. embryo expression (LCM): '48.4761' |
|||
| AT1G49540 | ELP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.07048 x 10-1 | 17 | 7 | 12 | 30 | 70.83% | 71.43% | 24 | 42 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.479791' Avg. expression score for this sample: '13.3106' Avg. expression score in LCM sample: '14.3158' Tissue used: 'full endosperm' |
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| AT1G49530 | GGPS6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '21.4332' Avg. expression score in LCM sample: '4.65924' Tissue used: 'full endosperm' |
||||
| AT1G49530 | GGPS6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49530 | GGPS6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49530 | GGPS6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 3 | 0 | 0 | 0 | 100.00% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '27.0946' Avg. embryo expression (LCM): '18.9383' |
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| AT1G49530 | GGPS6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49530 | GGPS6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 0 | 0 | 0 | 100.00% | 3 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '28.8693' Avg. expression score in LCM sample: '4.65924' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.3095 x 10-2 | 28 | 22 | 13 | 85 | 56.00% | 86.73% | 50 | 98 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.2e-07' Avg. expression score for this sample: '21.7999' Avg. expression score in LCM sample: '7.7458' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49520 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.71242 x 10-1 | 24 | 45 | 9 | 21 | 34.78% | 70.00% | 69 | 30 | TAIR8 |
Avg. embryo expression (dissected): '31.4687' Avg. embryo expression (LCM): '30.2411' |
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| AT1G49520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.5 x 10-8 | 85 | 0 | 100.00% | 85 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.6 x 10-6 | 124 | 41 | 26 | 184 | 75.15% | 87.62% | 165 | 210 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.2e-07' Avg. expression score for this sample: '59.0206' Avg. expression score in LCM sample: '7.7458' Tissue used: 'full endosperm' |
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| AT1G49520 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.76955 x 10-1 | 94 | 15 | 86.24% | 109 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.21474 x 10-1 | 26 | 7 | 78.79% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49510 | emb1273 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49510 | emb1273 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.193 x 10-3 | 22 | 1 | 95.65% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49510 | emb1273 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.55654 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49510 | emb1273 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.37744 x 10-1 | 1 | 3 | 5 | 4 | 25.00% | 44.44% | 4 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '14.5265' Avg. expression score in LCM sample: '13.3457' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49510 | emb1273 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.18245 x 10-1 | 14 | 8 | 2 | 3 | 63.64% | 60.00% | 22 | 5 | TAIR8 |
Avg. embryo expression (dissected): '26.5986' Avg. embryo expression (LCM): '48.7398' |
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| AT1G49510 | emb1273 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.87607 x 10-1 | 6 | 2 | 2 | 12 | 75.00% | 85.71% | 8 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '28.1791' Avg. expression score in LCM sample: '13.3457' Tissue used: 'full endosperm' |
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| AT1G49500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G49500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G49500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.1 x 10-6 | 10 | 17 | 55 | 27 | 37.04% | 32.93% | 27 | 82 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00014' Avg. expression score for this sample: '66.9829' Avg. expression score in LCM sample: '4.04193' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.89731 x 10-1 | 31 | 11 | 39 | 22 | 73.81% | 36.07% | 42 | 61 | TAIR8 |
Avg. embryo expression (dissected): '147.996' Avg. embryo expression (LCM): '38.0274' |
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| AT1G49490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 3 | 40.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 38 | 14 | 12 | 10 | 73.08% | 45.45% | 52 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00014' Avg. expression score for this sample: '42.4889' Avg. expression score in LCM sample: '4.04193' Tissue used: 'full endosperm' |
|||||
| AT1G49490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 4 | 50.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49480 | RTV1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.8 x 10-5 | 48 | 5 | 90.57% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49480 | RTV1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.50264 x 10-1 | 23 | 6 | 79.31% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49480 | RTV1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.75482 x 10-1 | 27 | 11 | 71.05% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49480 | RTV1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.89266 x 10-1 | 42 | 16 | 21 | 39 | 72.41% | 65.00% | 58 | 60 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.666046' Avg. expression score for this sample: '153.9' Avg. expression score in LCM sample: '62.7013' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49480 | RTV1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.09867 x 10-1 | 67 | 54 | 22 | 12 | 55.37% | 35.29% | 121 | 34 | TAIR8 |
Avg. embryo expression (dissected): '200.079' Avg. embryo expression (LCM): '274.179' |
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| AT1G49480 | RTV1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.40931 x 10-1 | 60 | 32 | 36 | 52 | 65.22% | 59.09% | 92 | 88 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.666046' Avg. expression score for this sample: '324.948' Avg. expression score in LCM sample: '62.7013' Tissue used: 'full endosperm' |
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| AT1G49475 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.6221 x 10-2 | 355 | 190 | 210 | 310 | 65.14% | 59.62% | 545 | 520 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.015974' Avg. expression score for this sample: '1007.49' Avg. expression score in LCM sample: '394.771' Tissue used: 'full endosperm' |
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| AT1G49475 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.08761 x 10-1 | 33 | 25 | 56.90% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49475 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.96169 x 10-1 | 37 | 26 | 58.73% | 63 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49475 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.08819 x 10-1 | 121 | 68 | 42 | 18 | 64.02% | 30.00% | 189 | 60 | TAIR8 |
Avg. embryo expression (dissected): '458.278' Avg. embryo expression (LCM): '578.448' |
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| AT1G49475 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2908 x 10-2 | 3 | 9 | 25.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49475 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.95456 x 10-1 | 175 | 106 | 108 | 188 | 62.28% | 63.51% | 281 | 296 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.015974' Avg. expression score for this sample: '612.061' Avg. expression score in LCM sample: '394.771' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.26156 x 10-1 | 90 | 61 | 60 | 195 | 59.60% | 76.47% | 151 | 255 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.370714' Avg. expression score for this sample: '589.225' Avg. expression score in LCM sample: '322.325' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.90529 x 10-1 | 4 | 4 | 2 | 7 | 50.00% | 77.78% | 8 | 9 | TAIR8 |
Avg. embryo expression (dissected): '46.0371' Avg. embryo expression (LCM): '5.51322' |
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| AT1G49470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.16454 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.9154 x 10-1 | 154 | 98 | 70 | 197 | 61.11% | 73.78% | 252 | 267 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.370714' Avg. expression score for this sample: '361.691' Avg. expression score in LCM sample: '322.325' Tissue used: 'full endosperm' |
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| AT1G49470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.32565 x 10-1 | 8 | 2 | 80.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.91653 x 10-1 | 33 | 21 | 61.11% | 54 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G49460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G49450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 995 | 6 | 4 | 334 | 99.40% | 98.82% | 1001 | 338 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '210.702' Avg. expression score in LCM sample: '2.91019' Tissue used: 'full endosperm' |
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| AT1G49450 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.82 x 10-4 | 3213 | 6 | 99.81% | 3219 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.03888 x 10-1 | 93 | 1 | 98.94% | 94 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49450 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.3 x 10-11 | 53 | 0 | 0 | 5 | 100.00% | 100.00% | 53 | 5 | TAIR8 |
Avg. embryo expression (dissected): '15.1949' Avg. embryo expression (LCM): '0' |
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| AT1G49450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.83119 x 10-1 | 466 | 3 | 99.36% | 469 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 464 | 2 | 6 | 80 | 99.57% | 93.02% | 466 | 86 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '123.9' Avg. expression score in LCM sample: '2.91019' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49435 | LCR16 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.5038 | 27 | 19 | 4 | 32 | 58.70% | 88.89% | 46 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.549322' Avg. expression score for this sample: '373.567' Avg. expression score in LCM sample: '137.47' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49435 | LCR16 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '25.5999' Avg. embryo expression (LCM): '0' |
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| AT1G49435 | LCR16 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.71982 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49435 | LCR16 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 8 | 17 | 48 | 42.86% | 73.85% | 14 | 65 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.549322' Avg. expression score for this sample: '166.996' Avg. expression score in LCM sample: '137.47' Tissue used: 'full endosperm' |
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| AT1G49435 | LCR16 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.2782 x 10-2 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49435 | LCR16 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49430 | LACS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.1 x 10-5 | 32 | 1 | 96.97% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49430 | LACS2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.0265 x 10-2 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |