| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G50060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G50060 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G50055 | TAS1B | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 0 | 0 | 75.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '12.0636' Avg. embryo expression (LCM): '13.4879' |
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| AT1G50055 | TAS1B | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G50055 | TAS1B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.22393' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G50055 | TAS1B | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G50055 | TAS1B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.26249' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT1G50055 | TAS1B | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G50050 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G50050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G50050 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.857667' Avg. embryo expression (LCM): '1.85867' |
|||||
| AT1G50050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.267249' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT1G50050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G50050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G50040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 4 | 5 | 6 | 73.33% | 54.55% | 15 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.014661' Avg. expression score for this sample: '7.51924' Avg. expression score in LCM sample: '1.82254' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G50040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 33 | 5 | 86.84% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G50040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.54 x 10-4 | 18 | 1 | 2 | 31 | 94.74% | 93.94% | 19 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.014661' Avg. expression score for this sample: '13.5437' Avg. expression score in LCM sample: '1.82254' Tissue used: 'full endosperm' |
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| AT1G50040 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.30634 x 10-1 | 16 | 7 | 69.57% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G50040 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.82051 x 10-1 | 1 | 7 | 0 | 0 | 12.50% | 8 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.5025' Avg. embryo expression (LCM): '2.3359' |
|||||
| AT1G50040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.16002 x 10-1 | 17 | 0 | 100.00% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G50030 | TOR | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.30679 x 10-1 | 22 | 9 | 70.97% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G50030 | TOR | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.39622 x 10-1 | 16 | 26 | 6 | 6 | 38.10% | 50.00% | 42 | 12 | TAIR8 |
Avg. embryo expression (dissected): '69.617' Avg. embryo expression (LCM): '52.9093' |
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| AT1G50030 | TOR | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.65363 x 10-1 | 35 | 14 | 17 | 61 | 71.43% | 78.21% | 49 | 78 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.284941' Avg. expression score for this sample: '77.8508' Avg. expression score in LCM sample: '56.3812' Tissue used: 'full endosperm' |
||||
| AT1G50030 | TOR | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.0539 x 10-2 | 99 | 18 | 84.62% | 117 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G50030 | TOR | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.14947 x 10-1 | 7 | 7 | 8 | 18 | 50.00% | 69.23% | 14 | 26 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.284941' Avg. expression score for this sample: '55.2955' Avg. expression score in LCM sample: '56.3812' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G50030 | TOR | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.4612 x 10-1 | 45 | 19 | 70.31% | 64 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G50020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5051 x 10-2 | 31 | 4 | 88.57% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G50020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.3489 x 10-1 | 12 | 31 | 2 | 7 | 27.91% | 77.78% | 43 | 9 | TAIR8 |
Avg. embryo expression (dissected): '32.3284' Avg. embryo expression (LCM): '35.5282' |
||||
| AT1G50020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.6011 x 10-2 | 20 | 2 | 90.91% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G50020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 16 | 11 | 10 | 26 | 59.26% | 72.22% | 27 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.495414' Avg. expression score for this sample: '32.934' Avg. expression score in LCM sample: '9.59774' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G50020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.77277 x 10-1 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G50020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.26144 x 10-1 | 74 | 37 | 15 | 55 | 66.67% | 78.57% | 111 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.495414' Avg. expression score for this sample: '84.9682' Avg. expression score in LCM sample: '9.59774' Tissue used: 'full endosperm' |
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| AT1G50010 | TUA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 35 | 11 | 28 | 45 | 76.09% | 61.64% | 46 | 73 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '9070.53' Avg. expression score in LCM sample: '5518.16' Tissue used: 'full endosperm' |
||||
| AT1G50010 | TUA2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.35847 x 10-1 | 33 | 19 | 63.46% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G50010 | TUA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 50 | 27 | 29 | 61 | 64.94% | 67.78% | 77 | 90 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '14059.8' Avg. expression score in LCM sample: '5518.16' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G50010 | TUA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.221 x 10-2 | 37 | 6 | 86.05% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G50010 | TUA2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.7087 x 10-2 | 19 | 2 | 90.48% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G50010 | TUA2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.64849 x 10-1 | 36 | 42 | 9 | 8 | 46.15% | 47.06% | 78 | 17 | TAIR8 |
Avg. embryo expression (dissected): '11629.9' Avg. embryo expression (LCM): '8192.5' |
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| AT1G50000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 9 | 8 | 3 | 3 | 52.94% | 50.00% | 17 | 6 | TAIR8 |
Avg. embryo expression (dissected): '74.8394' Avg. embryo expression (LCM): '63.2952' |
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| AT1G50000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.03846 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G50000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.40405 x 10-1 | 3 | 1 | 1 | 7 | 75.00% | 87.50% | 4 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.304916' Avg. expression score for this sample: '31.6487' Avg. expression score in LCM sample: '24.6925' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G50000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.17946 x 10-1 | 34 | 12 | 73.91% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G50000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.8084 x 10-1 | 10 | 0 | 6 | 10 | 100.00% | 62.50% | 10 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.304916' Avg. expression score for this sample: '17.2813' Avg. expression score in LCM sample: '24.6925' Tissue used: 'full endosperm' |
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| AT1G50000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.4645 x 10-2 | 24 | 1 | 96.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49990 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.4947 x 10-2 | 29 | 0 | 100.00% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49990 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.69362 x 10-1 | 22 | 12 | 7 | 3 | 64.71% | 30.00% | 34 | 10 | TAIR8 |
Avg. embryo expression (dissected): '17.2619' Avg. embryo expression (LCM): '2.56195' |
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| AT1G49990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.7811 x 10-2 | 29 | 5 | 3 | 11 | 85.29% | 78.57% | 34 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.008238' Avg. expression score for this sample: '8.1949' Avg. expression score in LCM sample: '1.99892' Tissue used: 'full endosperm' |
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| AT1G49990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 48 | 8 | 85.71% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.4778 x 10-2 | 12 | 0 | 1 | 9 | 100.00% | 90.00% | 12 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.008238' Avg. expression score for this sample: '5.44264' Avg. expression score in LCM sample: '1.99892' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.08794 x 10-1 | 385 | 223 | 213 | 412 | 63.32% | 65.92% | 608 | 625 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '149.836' Avg. expression score in LCM sample: '80.0008' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.6 x 10-6 | 146 | 29 | 83.43% | 175 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.55281 x 10-1 | 195 | 123 | 90 | 309 | 61.32% | 77.44% | 318 | 399 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '67.6012' Avg. expression score in LCM sample: '80.0008' Tissue used: 'full endosperm' |
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| AT1G49980 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.23 x 10-4 | 169 | 47 | 78.24% | 216 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49980 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.54 x 10-4 | 275 | 392 | 116 | 75 | 41.23% | 39.27% | 667 | 191 | TAIR8 |
Avg. embryo expression (dissected): '173.613' Avg. embryo expression (LCM): '94.6917' |
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| AT1G49980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.15488 x 10-1 | 96 | 37 | 72.18% | 133 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49975 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49975 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.44533 x 10-1 | 25 | 22 | 2 | 2 | 53.19% | 50.00% | 47 | 4 | TAIR8 |
Avg. embryo expression (dissected): '63.1506' Avg. embryo expression (LCM): '88.5003' |
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| AT1G49975 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.46807 x 10-1 | 5 | 0 | 14 | 5 | 100.00% | 26.32% | 5 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.21223' Avg. expression score for this sample: '18.6207' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G49975 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49975 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 14 | 4 | 5 | 1 | 77.78% | 16.67% | 18 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.21223' Avg. expression score for this sample: '23.7585' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49975 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.42353 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49970 | CLPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.9197 x 10-2 | 143 | 49 | 74.48% | 192 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49970 | CLPR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.9631 x 10-2 | 32 | 88 | 18 | 33 | 26.67% | 64.71% | 120 | 51 | TAIR8 |
Avg. embryo expression (dissected): '746.932' Avg. embryo expression (LCM): '404.311' |
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| AT1G49970 | CLPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.0214 x 10-2 | 49 | 11 | 81.67% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49970 | CLPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.635 x 10-3 | 30 | 61 | 30 | 68 | 32.97% | 69.39% | 91 | 98 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.495181' Avg. expression score for this sample: '575.699' Avg. expression score in LCM sample: '130.415' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49970 | CLPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.5 x 10-11 | 216 | 27 | 88.89% | 243 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49970 | CLPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2311 x 10-2 | 164 | 101 | 70 | 304 | 61.89% | 81.28% | 265 | 374 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.495181' Avg. expression score for this sample: '552.546' Avg. expression score in LCM sample: '130.415' Tissue used: 'full endosperm' |
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| AT1G49960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '18.3724' Avg. expression score in LCM sample: '1.61677' Tissue used: 'full endosperm' |
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| AT1G49960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '6.41823' Avg. expression score in LCM sample: '1.61677' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49960 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49960 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '7.85029' Avg. embryo expression (LCM): '8.99194' |
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| AT1G49952 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.62554 x 10-1 | 6 | 1 | 12 | 3 | 85.71% | 20.00% | 7 | 15 | TAIR8 |
Avg. embryo expression (dissected): '130.258' Avg. embryo expression (LCM): '86.516' |
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| AT1G49952 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.4 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49952 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 1 | 3 | 3 | 80.00% | 50.00% | 5 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '37.8892' Avg. expression score in LCM sample: '55.5287' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49952 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49952 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 7 | 1 | 6 | 4 | 87.50% | 40.00% | 8 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '28.1853' Avg. expression score in LCM sample: '55.5287' Tissue used: 'full endosperm' |
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| AT1G49952 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49950 | TRB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.9 x 10-18 | 513 | 86 | 85.64% | 599 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49950 | TRB1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0133 | 100 | 67 | 59.88% | 167 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49950 | TRB1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.2 x 10-4 | 248 | 112 | 54 | 33 | 68.89% | 37.93% | 360 | 87 | TAIR8 |
Avg. embryo expression (dissected): '241.329' Avg. embryo expression (LCM): '219.26' |
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| AT1G49950 | TRB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.07 x 10-4 | 678 | 186 | 418 | 861 | 78.47% | 67.32% | 864 | 1279 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.03095' Avg. expression score for this sample: '538.044' Avg. expression score in LCM sample: '169.261' Tissue used: 'full endosperm' |
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| AT1G49950 | TRB1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.907 x 10-3 | 411 | 138 | 74.86% | 549 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G49950 | TRB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.07694 x 10-1 | 516 | 165 | 305 | 347 | 75.77% | 53.22% | 681 | 652 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.03095' Avg. expression score for this sample: '488.525' Avg. expression score in LCM sample: '169.261' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 4 | 3 | 4 | 73.33% | 57.14% | 15 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '8.70989' Avg. expression score in LCM sample: '5.32065' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.2352 x 10-2 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 17 | 3 | 12 | 11 | 85.00% | 47.83% | 20 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '11.7059' Avg. expression score in LCM sample: '5.32065' Tissue used: 'full endosperm' |
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| AT1G49940 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.06062 x 10-1 | 2 | 2 | 50.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49940 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 15 | 12 | 5 | 4 | 55.56% | 44.44% | 27 | 9 | TAIR8 |
Avg. embryo expression (dissected): '24.2813' Avg. embryo expression (LCM): '22.7185' |
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| AT1G49940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G49930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49930 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G49930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 0 | 3 | 100.00% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.102941' Avg. expression score for this sample: '1.25034' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G49930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.54545 x 10-1 | 2 | 0 | 0 | 4 | 100.00% | 100.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.102941' Avg. expression score for this sample: '3.87743' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G49930 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G49920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '39.9422' Avg. embryo expression (LCM): '43.2643' |