| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G52650 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-10 | 42 | 0 | 100.00% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4432 x 10-2 | 65 | 8 | 59 | 7 | 89.04% | 10.61% | 73 | 66 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003827' Avg. expression score for this sample: '15.5948' Avg. expression score in LCM sample: '12.9783' Tissue used: 'full endosperm' |
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| AT1G52650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.31649 x 10-1 | 70 | 2 | 56 | 6 | 97.22% | 9.68% | 72 | 62 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003827' Avg. expression score for this sample: '22.9542' Avg. expression score in LCM sample: '12.9783' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52650 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.16051 x 10-1 | 28 | 1 | 12 | 0 | 96.55% | 0.00% | 29 | 12 | TAIR8 |
Avg. embryo expression (dissected): '13.4593' Avg. embryo expression (LCM): '11.8302' |
||||
| AT1G52650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.849 x 10-2 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.28441 x 10-1 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.8 x 10-5 | 838 | 214 | 79.66% | 1052 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52640 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.1 x 10-4 | 174 | 339 | 66 | 98 | 33.92% | 59.76% | 513 | 164 | TAIR8 |
Avg. embryo expression (dissected): '210.614' Avg. embryo expression (LCM): '188.266' |
||||
| AT1G52640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.74086 x 10-1 | 39 | 20 | 66.10% | 59 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52640 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4874 x 10-2 | 225 | 120 | 65.22% | 345 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.42246 x 10-1 | 181 | 110 | 59 | 174 | 62.20% | 74.68% | 291 | 233 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.013245' Avg. expression score for this sample: '98.1297' Avg. expression score in LCM sample: '20.5036' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G52640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.441 x 10-3 | 96 | 40 | 83 | 292 | 70.59% | 77.87% | 136 | 375 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.013245' Avg. expression score for this sample: '73.1346' Avg. expression score in LCM sample: '20.5036' Tissue used: 'full endosperm' |
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| AT1G52630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '49.9876' Avg. expression score in LCM sample: '33.5994' Tissue used: 'full endosperm' |
|||||||
| AT1G52630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '38.9688' Avg. expression score in LCM sample: '33.5994' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G52630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G52630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G52630 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '46.8632' Avg. embryo expression (LCM): '30.3541' |
||||||
| AT1G52630 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G52620 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-9 | 106 | 10 | 91.38% | 116 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.79493 x 10-1 | 39 | 8 | 22 | 41 | 82.98% | 65.08% | 47 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.4697' Avg. expression score for this sample: '75.4492' Avg. expression score in LCM sample: '30.8656' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.23031 x 10-1 | 62 | 59 | 35 | 75 | 51.24% | 68.18% | 121 | 110 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.4697' Avg. expression score for this sample: '166.56' Avg. expression score in LCM sample: '30.8656' Tissue used: 'full endosperm' |
|||||
| AT1G52620 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.43579 x 10-1 | 28 | 44 | 25 | 22 | 38.89% | 46.81% | 72 | 47 | TAIR8 |
Avg. embryo expression (dissected): '164.255' Avg. embryo expression (LCM): '125.284' |
||||
| AT1G52620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.65997 x 10-1 | 14 | 5 | 73.68% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.64 x 10-4 | 51 | 9 | 85.00% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52618 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.485 x 10-3 | 45 | 6 | 88.24% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52618 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.988 x 10-3 | 24 | 76 | 6 | 15 | 24.00% | 71.43% | 100 | 21 | TAIR8 |
Avg. embryo expression (dissected): '200.951' Avg. embryo expression (LCM): '190.212' |
||||
| AT1G52618 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.58 x 10-4 | 45 | 4 | 91.84% | 49 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52618 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0709 x 10-2 | 54 | 11 | 83.08% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52618 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.86298 x 10-1 | 46 | 37 | 22 | 89 | 55.42% | 80.18% | 83 | 111 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '138.982' Avg. expression score in LCM sample: '71.3437' Tissue used: 'full endosperm' |
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| AT1G52618 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.53554 x 10-1 | 12 | 30 | 8 | 46 | 28.57% | 85.19% | 42 | 54 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '135.717' Avg. expression score in LCM sample: '71.3437' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52615 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.541845' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52615 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.568957' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT1G52615 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G52615 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G52615 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.304321' Avg. embryo expression (LCM): '0' |
|||||
| AT1G52615 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G52600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.637 x 10-3 | 156 | 31 | 83.42% | 187 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.19515 x 10-1 | 36 | 16 | 38 | 102 | 69.23% | 72.86% | 52 | 140 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.303712' Avg. expression score for this sample: '459.297' Avg. expression score in LCM sample: '206.344' Tissue used: 'full endosperm' |
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| AT1G52600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 9 | 0 | 12 | 47.06% | 100.00% | 17 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.303712' Avg. expression score for this sample: '385.17' Avg. expression score in LCM sample: '206.344' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.40867 x 10-1 | 1 | 8 | 1 | 0 | 11.11% | 0.00% | 9 | 1 | TAIR8 |
Avg. embryo expression (dissected): '341.099' Avg. embryo expression (LCM): '187.876' |
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| AT1G52600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.8049 x 10-2 | 20 | 1 | 95.24% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.587 x 10-3 | 282 | 58 | 82.94% | 340 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.5 x 10-14 | 372 | 26 | 93.47% | 398 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52590 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.93718 x 10-1 | 32 | 45 | 13 | 22 | 41.56% | 62.86% | 77 | 35 | TAIR8 |
Avg. embryo expression (dissected): '61.9388' Avg. embryo expression (LCM): '40.7275' |
||||
| AT1G52590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.19 x 10-4 | 90 | 7 | 92.78% | 97 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52590 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.171 x 10-3 | 258 | 45 | 85.15% | 303 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 46 | 46 | 28 | 98 | 50.00% | 77.78% | 92 | 126 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.7e-06' Avg. expression score for this sample: '71.0627' Avg. expression score in LCM sample: '24.7807' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.9 x 10-8 | 109 | 69 | 45 | 371 | 61.24% | 89.18% | 178 | 416 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.7e-06' Avg. expression score for this sample: '140.192' Avg. expression score in LCM sample: '24.7807' Tissue used: 'full endosperm' |
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| AT1G52580 | RBL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 1 | 0 | 2 | 50.00% | 100.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.12589' Avg. expression score in LCM sample: '10.0975' Tissue used: 'full endosperm' |
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| AT1G52580 | RBL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 2 | 5 | 100.00% | 71.43% | 2 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '8.90752' Avg. expression score in LCM sample: '10.0975' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52580 | RBL5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.7619 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G52580 | RBL5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.31063 x 10-1 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G52580 | RBL5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '9.92076' Avg. embryo expression (LCM): '9.85848' |
||||
| AT1G52580 | RBL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.25926 x 10-1 | 13 | 1 | 92.86% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G52570 | PLDALPHA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 14 | 8 | 5 | 13 | 63.64% | 72.22% | 22 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.511126' Avg. expression score for this sample: '14.1402' Avg. expression score in LCM sample: '4.83561' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52570 | PLDALPHA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.50555 x 10-1 | 46 | 12 | 14 | 23 | 79.31% | 62.16% | 58 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.511126' Avg. expression score for this sample: '18.6298' Avg. expression score in LCM sample: '4.83561' Tissue used: 'full endosperm' |
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| AT1G52570 | PLDALPHA2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 16 | 13 | 6 | 5 | 55.17% | 45.45% | 29 | 11 | TAIR8 |
Avg. embryo expression (dissected): '25.6658' Avg. embryo expression (LCM): '8.26354' |
|||
| AT1G52570 | PLDALPHA2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.10484 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G52570 | PLDALPHA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.74 x 10-4 | 44 | 2 | 95.65% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G52570 | PLDALPHA2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.34173 x 10-1 | 26 | 9 | 74.29% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G52565 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.4889 x 10-1 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52565 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52565 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 5 | 2 | 1 | 50.00% | 33.33% | 10 | 3 | TAIR8 |
Avg. embryo expression (dissected): '9.93573' Avg. embryo expression (LCM): '10.2101' |
||||
| AT1G52565 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52565 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.05438 x 10-1 | 14 | 10 | 1 | 13 | 58.33% | 92.86% | 24 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.499084' Avg. expression score for this sample: '16.4673' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G52565 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.76471 x 10-1 | 3 | 1 | 0 | 5 | 75.00% | 100.00% | 4 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.499084' Avg. expression score for this sample: '5.95091' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.08578 x 10-1 | 170 | 49 | 85 | 123 | 77.63% | 59.13% | 219 | 208 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '382.987' Avg. expression score in LCM sample: '1.79315' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.25275 x 10-1 | 93 | 48 | 55 | 84 | 65.96% | 60.43% | 141 | 139 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '157.183' Avg. expression score in LCM sample: '1.79315' Tissue used: 'full endosperm' |
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| AT1G52560 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.1543 x 10-2 | 41 | 8 | 83.67% | 49 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.38238 x 10-1 | 13 | 12 | 52.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52560 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 86 | 70 | 73 | 55 | 55.13% | 42.97% | 156 | 128 | TAIR8 |
Avg. embryo expression (dissected): '450.816' Avg. embryo expression (LCM): '16.8411' |
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| AT1G52550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.8461 x 10-2 | 7 | 0 | 0 | 1 | 100.00% | 100.00% | 7 | 1 | TAIR8 |
Avg. embryo expression (dissected): '27.1828' Avg. embryo expression (LCM): '38.6176' |
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| AT1G52550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G52550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.25223 x 10-1 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.54307 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.02941 x 10-1 | 8 | 0 | 0 | 1 | 100.00% | 100.00% | 8 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '46.0076' Avg. expression score in LCM sample: '17.2113' Tissue used: 'full endosperm' |
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| AT1G52550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.28282 x 10-1 | 1 | 8 | 0 | 8 | 11.11% | 100.00% | 9 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '23.432' Avg. expression score in LCM sample: '17.2113' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.37917 x 10-1 | 26 | 5 | 10 | 15 | 83.87% | 60.00% | 31 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.334854' Avg. expression score for this sample: '105.563' Avg. expression score in LCM sample: '84.9539' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.54792 x 10-1 | 53 | 11 | 32 | 52 | 82.81% | 61.90% | 64 | 84 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.334854' Avg. expression score for this sample: '157.928' Avg. expression score in LCM sample: '84.9539' Tissue used: 'full endosperm' |
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| AT1G52540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.64554 x 10-1 | 9 | 8 | 52.94% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.82051 x 10-1 | 1 | 6 | 0 | 0 | 14.29% | 7 | 0 | TAIR8 |
Avg. embryo expression (dissected): '34.4175' Avg. embryo expression (LCM): '42.1466' |
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| AT1G52540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9402 x 10-1 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52530 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G52530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G52530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G52530 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '16.9978' Avg. embryo expression (LCM): '21.7263' |
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| AT1G52530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '11.7308' Avg. expression score in LCM sample: '2.42516' Tissue used: 'full endosperm' |
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| AT1G52530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '8.49238' Avg. expression score in LCM sample: '2.42516' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52520 | FRS6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 7 | 4 | 4 | 12 | 63.64% | 75.00% | 11 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.875075' Avg. expression score for this sample: '58.8651' Avg. expression score in LCM sample: '21.9587' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G52520 | FRS6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.08985 x 10-1 | 20 | 14 | 10 | 18 | 58.82% | 64.29% | 34 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.875075' Avg. expression score for this sample: '86.1238' Avg. expression score in LCM sample: '21.9587' Tissue used: 'full endosperm' |
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| AT1G52520 | FRS6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.00105 x 10-1 | 6 | 15 | 2 | 3 | 28.57% | 60.00% | 21 | 5 | TAIR8 |
Avg. embryo expression (dissected): '69.4013' Avg. embryo expression (LCM): '43.7666' |
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| AT1G52520 | FRS6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.3744 x 10-2 | 14 | 2 | 87.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G52520 | FRS6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.00982 x 10-1 | 43 | 14 | 75.44% | 57 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G52520 | FRS6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.696 x 10-3 | 67 | 12 | 84.81% | 79 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G52510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G52510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G52510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '31.7459' Avg. embryo expression (LCM): '33.2174' |
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| AT1G52510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |