| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G53250 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.37172 x 10-1 | 30 | 9 | 76.92% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.83368 x 10-1 | 11 | 3 | 78.57% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G53250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.23273 x 10-1 | 21 | 5 | 9 | 30 | 80.77% | 76.92% | 26 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.893097' Avg. expression score for this sample: '11.4887' Avg. expression score in LCM sample: '1.10234' Tissue used: 'full endosperm' |
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| AT1G53240 | mMDH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.88275 x 10-1 | 44 | 35 | 40 | 73 | 55.70% | 64.60% | 79 | 113 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.387796' Avg. expression score for this sample: '458.025' Avg. expression score in LCM sample: '457.046' Tissue used: 'full endosperm' |
||||
| AT1G53240 | mMDH1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.4692 x 10-2 | 29 | 6 | 82.86% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53240 | mMDH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 50 | 26 | 30 | 58 | 65.79% | 65.91% | 76 | 88 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.387796' Avg. expression score for this sample: '345.248' Avg. expression score in LCM sample: '457.046' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G53240 | mMDH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.6 x 10-7 | 112 | 18 | 86.15% | 130 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53240 | mMDH1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 88 | 112 | 25 | 48 | 44.00% | 65.75% | 200 | 73 | TAIR8 |
Avg. embryo expression (dissected): '776.623' Avg. embryo expression (LCM): '918.735' |
|||
| AT1G53240 | mMDH1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.97176 x 10-1 | 95 | 44 | 68.35% | 139 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53233 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.2412 x 10-2 | 10 | 1 | 90.91% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53233 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.36826 x 10-1 | 11 | 8 | 13 | 18 | 57.89% | 58.06% | 19 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.547575' Avg. expression score for this sample: '56.3157' Avg. expression score in LCM sample: '18.3577' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G53233 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.07265 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53233 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 10 | 5 | 11 | 20 | 66.67% | 64.52% | 15 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.547575' Avg. expression score for this sample: '36.4608' Avg. expression score in LCM sample: '18.3577' Tissue used: 'full endosperm' |
|||||
| AT1G53233 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.4319 x 10-1 | 26 | 22 | 23 | 12 | 54.17% | 34.29% | 48 | 35 | TAIR8 |
Avg. embryo expression (dissected): '166.968' Avg. embryo expression (LCM): '83.2257' |
||||
| AT1G53233 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.51146 x 10-1 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53230 | TCP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.27152 x 10-1 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53230 | TCP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.5536 x 10-1 | 20 | 13 | 9 | 9 | 60.61% | 50.00% | 33 | 18 | TAIR8 |
Avg. embryo expression (dissected): '205.766' Avg. embryo expression (LCM): '103.897' |
|||
| AT1G53230 | TCP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.12872 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53230 | TCP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 10 | 4 | 5 | 9 | 71.43% | 64.29% | 14 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.855205' Avg. expression score for this sample: '44.3828' Avg. expression score in LCM sample: '25.0893' Tissue used: 'full endosperm' |
||||
| AT1G53230 | TCP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.9448 x 10-2 | 2 | 6 | 25.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53230 | TCP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.12726 x 10-1 | 14 | 9 | 3 | 15 | 60.87% | 83.33% | 23 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.855205' Avg. expression score for this sample: '65.9679' Avg. expression score in LCM sample: '25.0893' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G53220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G53220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G53220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G53220 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G53220 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G53220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G53210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.5419 x 10-2 | 377 | 175 | 68.30% | 552 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 x 10-5 | 237 | 69 | 105 | 345 | 77.45% | 76.67% | 306 | 450 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000381' Avg. expression score for this sample: '604.843' Avg. expression score in LCM sample: '168.115' Tissue used: 'full endosperm' |
|||||
| AT1G53210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 73 | 26 | 73.74% | 99 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.37195 x 10-1 | 141 | 85 | 72 | 184 | 62.39% | 71.88% | 226 | 256 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000381' Avg. expression score for this sample: '689.62' Avg. expression score in LCM sample: '168.115' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G53210 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.1 x 10-5 | 247 | 45 | 84.59% | 292 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53210 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.35488 x 10-1 | 51 | 42 | 6 | 16 | 54.84% | 72.73% | 93 | 22 | TAIR8 |
Avg. embryo expression (dissected): '193.405' Avg. embryo expression (LCM): '74.3719' |
||||
| AT1G53200 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.26434 x 10-1 | 19 | 17 | 2 | 7 | 52.78% | 77.78% | 36 | 9 | TAIR8 |
Avg. embryo expression (dissected): '53.3846' Avg. embryo expression (LCM): '39.2079' |
||||
| AT1G53200 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.71 x 10-4 | 101 | 15 | 87.07% | 116 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.352 x 10-2 | 119 | 30 | 79.87% | 149 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.45503 x 10-1 | 10 | 12 | 3 | 7 | 45.45% | 70.00% | 22 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.821999' Avg. expression score for this sample: '17.531' Avg. expression score in LCM sample: '5.39413' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G53200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 2 | 75.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.49876 x 10-1 | 51 | 23 | 19 | 55 | 68.92% | 74.32% | 74 | 74 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.821999' Avg. expression score for this sample: '43.4552' Avg. expression score in LCM sample: '5.39413' Tissue used: 'full endosperm' |
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| AT1G53190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.84 x 10-3 | 117 | 16 | 39 | 75 | 87.97% | 65.79% | 133 | 114 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.047696' Avg. expression score for this sample: '166.016' Avg. expression score in LCM sample: '68.3159' Tissue used: 'full endosperm' |
|||||
| AT1G53190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.1762 x 10-2 | 10 | 11 | 47.62% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 75 | 14 | 41 | 33 | 84.27% | 44.59% | 89 | 74 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.047696' Avg. expression score for this sample: '174.388' Avg. expression score in LCM sample: '68.3159' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G53190 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.8 x 10-13 | 180 | 7 | 96.26% | 187 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53190 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 22 | 18 | 10 | 8 | 55.00% | 44.44% | 40 | 18 | TAIR8 |
Avg. embryo expression (dissected): '91.3459' Avg. embryo expression (LCM): '45.5374' |
||||
| AT1G53190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.35872 x 10-1 | 41 | 18 | 69.49% | 59 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.44444 x 10-1 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.61927' Avg. expression score for this sample: '1.85862' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G53180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G53180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.5671 | 0 | 2 | 2 | 2 | 0.00% | 50.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.61927' Avg. expression score for this sample: '1.97201' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G53180 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 2 | 0 | 3 | 0.00% | 100.00% | 2 | 3 | TAIR8 |
Avg. embryo expression (dissected): '9.75712' Avg. embryo expression (LCM): '8.16308' |
||||
| AT1G53180 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 9 | 43.75% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53170 | ERF8 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53170 | ERF8 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.49845 x 10-1 | 2 | 7 | 1 | 0 | 22.22% | 0.00% | 9 | 1 | TAIR8 |
Avg. embryo expression (dissected): '14.9373' Avg. embryo expression (LCM): '13.7265' |
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| AT1G53170 | ERF8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.41418 x 10-1 | 2 | 3 | 40.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53170 | ERF8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.04933 x 10-1 | 15 | 3 | 11 | 6 | 83.33% | 35.29% | 18 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.550263' Avg. expression score for this sample: '28.8627' Avg. expression score in LCM sample: '11.2439' Tissue used: 'full endosperm' |
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| AT1G53170 | ERF8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 4 | 55.56% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53170 | ERF8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.37428 x 10-1 | 7 | 2 | 6 | 4 | 77.78% | 40.00% | 9 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.550263' Avg. expression score for this sample: '28.0024' Avg. expression score in LCM sample: '11.2439' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G53165 | ATMAP4K ALPHA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.54459 x 10-1 | 11 | 5 | 10 | 8 | 68.75% | 44.44% | 16 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.882833' Avg. expression score for this sample: '23.7999' Avg. expression score in LCM sample: '14.8449' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G53165 | ATMAP4K ALPHA1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.64706 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53165 | ATMAP4K ALPHA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.5801 x 10-1 | 25 | 7 | 11 | 28 | 78.12% | 71.79% | 32 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.882833' Avg. expression score for this sample: '49.3893' Avg. expression score in LCM sample: '14.8449' Tissue used: 'full endosperm' |
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| AT1G53165 | ATMAP4K ALPHA1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.80129 x 10-1 | 11 | 7 | 1 | 4 | 61.11% | 80.00% | 18 | 5 | TAIR8 |
Avg. embryo expression (dissected): '27.981' Avg. embryo expression (LCM): '18.0467' |
|||
| AT1G53165 | ATMAP4K ALPHA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.747 x 10-3 | 98 | 17 | 85.22% | 115 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53165 | ATMAP4K ALPHA1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.8588 x 10-2 | 75 | 17 | 81.52% | 92 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53163 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G53163 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.40624' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G53163 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G53163 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G53163 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G53163 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.726988' Avg. embryo expression (LCM): '0' |
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| AT1G53160 | SPL4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.362449' Avg. embryo expression (LCM): '6.26673' |
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| AT1G53160 | SPL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53160 | SPL4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53160 | SPL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '3.54173' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G53160 | SPL4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53160 | SPL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.4502' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G53140 | DRP5A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 10 | 8 | 9 | 22 | 55.56% | 70.97% | 18 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '36.4214' Avg. expression score in LCM sample: '100.916' Tissue used: 'full endosperm' |
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| AT1G53140 | DRP5A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.92628 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53140 | DRP5A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 18 | 6 | 7 | 6 | 75.00% | 46.15% | 24 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '53.0996' Avg. expression score in LCM sample: '100.916' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G53140 | DRP5A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.1214 x 10-2 | 9 | 13 | 40.91% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53140 | DRP5A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.17272 x 10-1 | 25 | 19 | 9 | 8 | 56.82% | 47.06% | 44 | 17 | TAIR8 |
Avg. embryo expression (dissected): '154.392' Avg. embryo expression (LCM): '178.658' |
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| AT1G53140 | DRP5A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 18 | 10 | 64.29% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G53130 | GRI | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53130 | GRI | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.317302' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G53130 | GRI | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53130 | GRI | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G53130 | GRI | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G53130 | GRI | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53120 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G53120 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '64.2043' Avg. embryo expression (LCM): '33.3556' |
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| AT1G53120 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G53120 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '59.4002' Avg. expression score in LCM sample: '3.77736' Tissue used: 'full endosperm' |
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| AT1G53120 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G53120 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '42.9904' Avg. expression score in LCM sample: '3.77736' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G53110 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.7802 | 15 | 3 | 5 | 8 | 83.33% | 61.54% | 18 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.4e-06' Avg. expression score for this sample: '146.201' Avg. expression score in LCM sample: '23.84' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G53110 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 1 | 90.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53110 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.1 x 10-7 | 50 | 1 | 5 | 54 | 98.04% | 91.53% | 51 | 59 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.4e-06' Avg. expression score for this sample: '388.35' Avg. expression score in LCM sample: '23.84' Tissue used: 'full endosperm' |
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| AT1G53110 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 9 | 5 | 5 | 1 | 64.29% | 16.67% | 14 | 6 | TAIR8 |
Avg. embryo expression (dissected): '137.883' Avg. embryo expression (LCM): '82.1205' |
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| AT1G53110 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.40319 x 10-1 | 191 | 11 | 94.55% | 202 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G53110 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.7887 x 10-1 | 61 | 3 | 95.31% | 64 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |