| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G55928 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.0816 x 10-2 | 47 | 0 | 100.00% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55928 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G55928 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G55928 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55920 | SERAT2;1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.077 x 10-3 | 548 | 22 | 96.14% | 570 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55920 | SERAT2;1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.34783 x 10-1 | 23 | 0 | 100.00% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55920 | SERAT2;1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.80172 x 10-1 | 4 | 5 | 3 | 0 | 44.44% | 0.00% | 9 | 3 | TAIR8 |
Avg. embryo expression (dissected): '11.9857' Avg. embryo expression (LCM): '17.9211' |
|||
| AT1G55920 | SERAT2;1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.34555 x 10-1 | 40 | 10 | 1 | 5 | 80.00% | 83.33% | 50 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.4e-06' Avg. expression score for this sample: '19.3078' Avg. expression score in LCM sample: '2.20469' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G55920 | SERAT2;1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.3 x 10-7 | 53 | 0 | 6 | 44 | 100.00% | 88.00% | 53 | 50 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.4e-06' Avg. expression score for this sample: '50.3313' Avg. expression score in LCM sample: '2.20469' Tissue used: 'full endosperm' |
||||
| AT1G55920 | SERAT2;1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.2625 x 10-2 | 128 | 6 | 95.52% | 134 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55915 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.2 x 10-5 | 31 | 38 | 44.93% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55915 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.2282 x 10-2 | 34 | 16 | 5 | 8 | 68.00% | 61.54% | 50 | 13 | TAIR8 |
Avg. embryo expression (dissected): '20.2778' Avg. embryo expression (LCM): '27.8047' |
||||
| AT1G55915 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4 x 10-11 | 210 | 6 | 97.22% | 216 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55915 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.20061 x 10-1 | 14 | 1 | 93.33% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55915 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.55 x 10-3 | 52 | 4 | 8 | 29 | 92.86% | 78.38% | 56 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.205481' Avg. expression score for this sample: '12.7066' Avg. expression score in LCM sample: '11.4791' Tissue used: 'full endosperm' |
|||||
| AT1G55915 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.78518 x 10-1 | 19 | 9 | 18 | 10 | 67.86% | 35.71% | 28 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.205481' Avg. expression score for this sample: '13.6337' Avg. expression score in LCM sample: '11.4791' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G55910 | ZIP11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.06721 x 10-1 | 19 | 6 | 3 | 9 | 76.00% | 75.00% | 25 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.008949' Avg. expression score for this sample: '13.3626' Avg. expression score in LCM sample: '20.9298' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G55910 | ZIP11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.159 x 10-3 | 26 | 1 | 4 | 19 | 96.30% | 82.61% | 27 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.008949' Avg. expression score for this sample: '22.1056' Avg. expression score in LCM sample: '20.9298' Tissue used: 'full endosperm' |
||||
| AT1G55910 | ZIP11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.9667 x 10-2 | 43 | 1 | 97.73% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55910 | ZIP11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.83442 x 10-1 | 24 | 1 | 96.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55910 | ZIP11 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 7 | 1 | 3 | 36.36% | 75.00% | 11 | 4 | TAIR8 |
Avg. embryo expression (dissected): '8.22356' Avg. embryo expression (LCM): '18.9383' |
|||
| AT1G55910 | ZIP11 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.172 x 10-3 | 90 | 2 | 97.83% | 92 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55900 | TIM50 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.45651 x 10-1 | 12 | 2 | 85.71% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55900 | TIM50 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55900 | TIM50 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 8 | 0 | 2 | 38.46% | 100.00% | 13 | 2 | TAIR8 |
Avg. embryo expression (dissected): '44.768' Avg. embryo expression (LCM): '90.6478' |
|||
| AT1G55900 | TIM50 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.11194 x 10-1 | 4 | 2 | 2 | 10 | 66.67% | 83.33% | 6 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '41.8425' Avg. expression score in LCM sample: '16.3882' Tissue used: 'full endosperm' |
||||
| AT1G55900 | TIM50 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 2 | 2 | 1 | 60.00% | 33.33% | 5 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '27.6235' Avg. expression score in LCM sample: '16.3882' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G55900 | TIM50 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 11 | 5 | 68.75% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-5 | 219 | 74 | 74.74% | 293 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55890 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.881 x 10-3 | 356 | 240 | 52 | 54 | 59.73% | 50.94% | 596 | 106 | TAIR8 |
Avg. embryo expression (dissected): '435.481' Avg. embryo expression (LCM): '459.506' |
||||
| AT1G55890 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-10 | 285 | 74 | 79.39% | 359 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.014 x 10-3 | 35 | 44 | 44.30% | 79 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.26203 x 10-1 | 181 | 56 | 86 | 62 | 76.37% | 41.89% | 237 | 148 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.011805' Avg. expression score for this sample: '166.956' Avg. expression score in LCM sample: '66.7138' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G55890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.9182 x 10-2 | 253 | 67 | 220 | 189 | 79.06% | 46.21% | 320 | 409 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.011805' Avg. expression score for this sample: '212.158' Avg. expression score in LCM sample: '66.7138' Tissue used: 'full endosperm' |
|||||
| AT1G55880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.20891 x 10-1 | 9 | 2 | 2 | 12 | 81.82% | 85.71% | 11 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.410132' Avg. expression score for this sample: '34.0567' Avg. expression score in LCM sample: '27.7203' Tissue used: 'full endosperm' |
|||||
| AT1G55880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 3 | 0 | 2 | 57.14% | 100.00% | 7 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.410132' Avg. expression score for this sample: '40.1174' Avg. expression score in LCM sample: '27.7203' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G55880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.23707 x 10-1 | 19 | 3 | 86.36% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.4 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55880 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.72548 x 10-1 | 9 | 4 | 1 | 1 | 69.23% | 50.00% | 13 | 2 | TAIR8 |
Avg. embryo expression (dissected): '67.1825' Avg. embryo expression (LCM): '42.9252' |
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| AT1G55880 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.13087 x 10-1 | 28 | 4 | 87.50% | 32 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55870 | AHG2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.0606 x 10-2 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55870 | AHG2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55870 | AHG2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 1 | 0 | 1 | 50.00% | 100.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '19.5808' Avg. embryo expression (LCM): '24.7404' |
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| AT1G55870 | AHG2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 1 | 50.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.5671' Avg. expression score for this sample: '10.1784' Avg. expression score in LCM sample: '10.0975' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G55870 | AHG2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.85714 x 10-1 | 1 | 2 | 1 | 0 | 33.33% | 0.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.5671' Avg. expression score for this sample: '9.31844' Avg. expression score in LCM sample: '10.0975' Tissue used: 'full endosperm' |
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| AT1G55870 | AHG2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.0606 x 10-2 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55860 | UPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.23 x 10-4 | 2463 | 1056 | 69.99% | 3519 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55860 | UPL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.4704 x 10-1 | 440 | 475 | 182 | 158 | 48.09% | 46.47% | 915 | 340 | TAIR8 |
Avg. embryo expression (dissected): '352.707' Avg. embryo expression (LCM): '195.424' |
|||
| AT1G55860 | UPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 2293 | 394 | 85.34% | 2687 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55860 | UPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.144 x 10-3 | 345 | 82 | 80.80% | 427 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55860 | UPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.7 x 10-16 | 1099 | 355 | 341 | 1148 | 75.58% | 77.10% | 1454 | 1489 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.4e-13' Avg. expression score for this sample: '429.664' Avg. expression score in LCM sample: '302.953' Tissue used: 'full endosperm' |
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| AT1G55860 | UPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.4903 x 10-1 | 414 | 217 | 257 | 609 | 65.61% | 70.32% | 631 | 866 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.4e-13' Avg. expression score for this sample: '294.211' Avg. expression score in LCM sample: '302.953' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G55850 | CSLE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.42857 x 10-1 | 0 | 3 | 1 | 0 | 0.00% | 0.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.02249' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G55850 | CSLE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.6584 x 10-2 | 2 | 0 | 0 | 10 | 100.00% | 100.00% | 2 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '9.89354' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT1G55850 | CSLE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.4759 x 10-2 | 19 | 0 | 100.00% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55850 | CSLE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55850 | CSLE1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.40927' Avg. embryo expression (LCM): '.540019' |
|||||
| AT1G55850 | CSLE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.82338 x 10-1 | 33 | 3 | 91.67% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55840 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.125 x 10-3 | 33 | 0 | 100.00% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.82023 x 10-1 | 5 | 3 | 62.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55840 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 3 | 0 | 0 | 57.14% | 7 | 0 | TAIR8 |
Avg. embryo expression (dissected): '48.5279' Avg. embryo expression (LCM): '41.5563' |
|||||
| AT1G55840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.0951 x 10-1 | 16 | 7 | 1 | 16 | 69.57% | 94.12% | 23 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.348718' Avg. expression score for this sample: '139.495' Avg. expression score in LCM sample: '12.6402' Tissue used: 'full endosperm' |
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| AT1G55840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 1 | 3 | 50.00% | 75.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.348718' Avg. expression score for this sample: '58.034' Avg. expression score in LCM sample: '12.6402' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G55840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.819 x 10-3 | 37 | 0 | 100.00% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.88016 x 10-1 | 14 | 10 | 58.33% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55830 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 2 | 0 | 0 | 33.33% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '16.7645' Avg. embryo expression (LCM): '24.1627' |
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| AT1G55830 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.5089 x 10-2 | 23 | 3 | 88.46% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.78431 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 2 | 0.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '13.0193' Avg. expression score in LCM sample: '8.21614' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G55830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 4 | 7 | 13 | 55.56% | 65.00% | 9 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '33.9884' Avg. expression score in LCM sample: '8.21614' Tissue used: 'full endosperm' |
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| AT1G55820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.1777 x 10-2 | 139 | 30 | 39 | 71 | 82.25% | 64.55% | 169 | 110 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.160717' Avg. expression score for this sample: '120.903' Avg. expression score in LCM sample: '49.9876' Tissue used: 'full endosperm' |
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| AT1G55820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.23593 x 10-1 | 96 | 24 | 59 | 64 | 80.00% | 52.03% | 120 | 123 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.160717' Avg. expression score for this sample: '187.409' Avg. expression score in LCM sample: '49.9876' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G55820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.09294 x 10-1 | 298 | 146 | 67.12% | 444 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.9251 x 10-1 | 9 | 6 | 60.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55820 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.00329 x 10-1 | 58 | 31 | 20 | 10 | 65.17% | 33.33% | 89 | 30 | TAIR8 |
Avg. embryo expression (dissected): '110.976' Avg. embryo expression (LCM): '95.621' |
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| AT1G55820 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.8 x 10-6 | 511 | 106 | 82.82% | 617 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G55810 | UKL3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.1 x 10-5 | 51 | 4 | 92.73% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55810 | UKL3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.05306 x 10-1 | 51 | 23 | 68.92% | 74 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55810 | UKL3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.27996 x 10-1 | 27 | 32 | 13 | 7 | 45.76% | 35.00% | 59 | 20 | TAIR8 |
Avg. embryo expression (dissected): '83.4028' Avg. embryo expression (LCM): '40.8405' |
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| AT1G55810 | UKL3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.5928 x 10-1 | 222 | 88 | 116 | 169 | 71.61% | 59.30% | 310 | 285 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.966024' Avg. expression score for this sample: '369.136' Avg. expression score in LCM sample: '197.878' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G55810 | UKL3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.0563 x 10-1 | 249 | 89 | 122 | 183 | 73.67% | 60.00% | 338 | 305 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.966024' Avg. expression score for this sample: '328.93' Avg. expression score in LCM sample: '197.878' Tissue used: 'full endosperm' |
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| AT1G55810 | UKL3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.60411 x 10-1 | 9 | 3 | 75.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G55805 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G55805 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '151.38' Avg. embryo expression (LCM): '133.309' |
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| AT1G55805 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G55805 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G55805 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '94.7406' Avg. expression score in LCM sample: '104.693' Tissue used: 'full endosperm' |
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| AT1G55805 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '129.98' Avg. expression score in LCM sample: '104.693' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G55800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '7.42602' Avg. expression score in LCM sample: '7.81929' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G55800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '14.1731' Avg. expression score in LCM sample: '7.81929' Tissue used: 'full endosperm' |
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| AT1G55800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G55800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G55800 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '7.35715' Avg. embryo expression (LCM): '1.33121' |
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| AT1G55800 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G55790 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G55790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G55790 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.224881' Avg. embryo expression (LCM): '0' |
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| AT1G55790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.8041' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G55790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.40241' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G55790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |