| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G62120 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.44 x 10-3 | 18 | 1 | 94.74% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62120 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.08398 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62110 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.667 x 10-2 | 40 | 9 | 81.63% | 49 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62110 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.44533 x 10-1 | 26 | 20 | 4 | 2 | 56.52% | 33.33% | 46 | 6 | TAIR8 |
Avg. embryo expression (dissected): '12.5801' Avg. embryo expression (LCM): '32.8532' |
||||
| AT1G62110 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.20576 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62110 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.65353 x 10-1 | 58 | 25 | 69.88% | 83 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62110 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.88775 x 10-1 | 15 | 11 | 6 | 8 | 57.69% | 57.14% | 26 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.583478' Avg. expression score for this sample: '5.90009' Avg. expression score in LCM sample: '1.60207' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62110 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 28 | 10 | 15 | 22 | 73.68% | 59.46% | 38 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.583478' Avg. expression score for this sample: '9.32423' Avg. expression score in LCM sample: '1.60207' Tissue used: 'full endosperm' |
|||||
| AT1G62085 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.16414 x 10-1 | 23 | 7 | 18 | 18 | 76.67% | 50.00% | 30 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.458916' Avg. expression score for this sample: '11.9519' Avg. expression score in LCM sample: '8.49539' Tissue used: 'full endosperm' |
|||||
| AT1G62085 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.08843 x 10-1 | 11 | 7 | 7 | 7 | 61.11% | 50.00% | 18 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.458916' Avg. expression score for this sample: '8.19032' Avg. expression score in LCM sample: '8.49539' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G62085 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.7 x 10-8 | 98 | 8 | 92.45% | 106 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62085 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.254 x 10-3 | 22 | 38 | 36.67% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62085 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.02421 x 10-1 | 5 | 2 | 71.43% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62085 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.38262 x 10-1 | 19 | 22 | 3 | 3 | 46.34% | 50.00% | 41 | 6 | TAIR8 |
Avg. embryo expression (dissected): '16.6406' Avg. embryo expression (LCM): '31.7355' |
||||
| AT1G62080 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.3 x 10-21 | 47 | 1 | 0 | 72 | 97.92% | 100.00% | 48 | 72 | TAIR8 |
Avg. embryo expression (dissected): '159.584' Avg. embryo expression (LCM): '0' |
||||
| AT1G62080 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 231 | 1 | 99.57% | 232 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62080 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.905 x 10-3 | 4538 | 50 | 98.91% | 4588 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62080 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 420 | 1 | 2 | 866 | 99.76% | 99.77% | 421 | 868 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '801.797' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G62080 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 2336 | 14 | 7 | 725 | 99.40% | 99.04% | 2350 | 732 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1860.39' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G62080 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.7727 x 10-2 | 6471 | 18 | 99.72% | 6489 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.2 x 10-6 | 17921 | 2 | 99.99% | 17923 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 197 | 0 | 100.00% | 197 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62070 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.0 | 526 | 1 | 1 | 505 | 99.81% | 99.80% | 527 | 506 | TAIR8 |
Avg. embryo expression (dissected): '751.323' Avg. embryo expression (LCM): '1.80844' |
||||
| AT1G62070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 8799 | 13 | 7 | 1823 | 99.85% | 99.62% | 8812 | 1830 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5870.02' Avg. expression score in LCM sample: '42.3006' Tissue used: 'full endosperm' |
|||||
| AT1G62070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 4611 | 8 | 1 | 6188 | 99.83% | 99.98% | 4619 | 6189 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4491.27' Avg. expression score in LCM sample: '42.3006' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G62070 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 25830 | 34 | 99.87% | 25864 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62060 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.17 x 10-4 | 32211 | 39 | 99.88% | 32250 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 2565 | 2 | 4 | 1908 | 99.92% | 99.79% | 2567 | 1912 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2001.55' Avg. expression score in LCM sample: '8.03976' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G62060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 7278 | 20 | 17 | 3231 | 99.73% | 99.48% | 7298 | 3248 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '3889.13' Avg. expression score in LCM sample: '8.03976' Tissue used: 'full endosperm' |
|||||
| AT1G62060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.08874 x 10-1 | 16156 | 34 | 99.79% | 16190 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62060 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.0 | 350 | 2 | 0 | 125 | 99.43% | 100.00% | 352 | 125 | TAIR8 |
Avg. embryo expression (dissected): '361.255' Avg. embryo expression (LCM): '0' |
||||
| AT1G62060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.86143 x 10-1 | 758 | 3 | 99.61% | 761 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62050 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 0 | 1 | 0 | 100.00% | 0.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '9.23573' Avg. embryo expression (LCM): '11.3153' |
||||
| AT1G62050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.1 | 7 | 0 | 0 | 1 | 100.00% | 100.00% | 7 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '11.8517' Avg. expression score in LCM sample: '2.64562' Tissue used: 'full endosperm' |
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| AT1G62050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 3 | 1 | 100.00% | 25.00% | 1 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.26316' Avg. expression score in LCM sample: '2.64562' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62050 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62045 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62045 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '7.98778' Avg. embryo expression (LCM): '5.09878' |
|||||
| AT1G62045 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62045 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62045 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.61715' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62045 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.23077 x 10-1 | 6 | 0 | 1 | 1 | 100.00% | 50.00% | 6 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.70396' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G62040 | ATG8C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0891 x 10-2 | 424 | 259 | 196 | 687 | 62.08% | 77.80% | 683 | 883 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00345' Avg. expression score for this sample: '366.47' Avg. expression score in LCM sample: '33.8052' Tissue used: 'full endosperm' |
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| AT1G62040 | ATG8C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.6633 x 10-1 | 143 | 32 | 56 | 83 | 81.71% | 59.71% | 175 | 139 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00345' Avg. expression score for this sample: '125.758' Avg. expression score in LCM sample: '33.8052' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62040 | ATG8C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.0 x 10-7 | 192 | 30 | 86.49% | 222 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62040 | ATG8C | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.85182 x 10-1 | 247 | 83 | 74.85% | 330 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62040 | ATG8C | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.379 x 10-2 | 176 | 53 | 76.86% | 229 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62040 | ATG8C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.00708 x 10-1 | 46 | 30 | 10 | 13 | 60.53% | 56.52% | 76 | 23 | TAIR8 |
Avg. embryo expression (dissected): '64.52' Avg. embryo expression (LCM): '50.9878' |
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| AT1G62035 | MIR171C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT1G62035 | MIR171C | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62035 | MIR171C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62035 | MIR171C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62035 | MIR171C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT1G62035 | MIR171C | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62030 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.06458 x 10-1 | 17 | 25 | 12 | 13 | 40.48% | 52.00% | 42 | 25 | TAIR8 |
Avg. embryo expression (dissected): '31.7586' Avg. embryo expression (LCM): '31.0197' |
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| AT1G62030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.30769 x 10-1 | 4 | 0 | 0 | 3 | 100.00% | 100.00% | 4 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.69589' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G62030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.53933' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G62030 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.89474 x 10-1 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.9 x 10-8 | 149 | 17 | 89.76% | 166 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 60 | 22 | 28 | 40 | 73.17% | 58.82% | 82 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.750745' Avg. expression score for this sample: '271.186' Avg. expression score in LCM sample: '273.91' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.76428 x 10-1 | 66 | 22 | 43 | 80 | 75.00% | 65.04% | 88 | 123 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.750745' Avg. expression score for this sample: '262.06' Avg. expression score in LCM sample: '273.91' Tissue used: 'full endosperm' |
|||||
| AT1G62020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.4462 x 10-2 | 96 | 24 | 80.00% | 120 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.14837 x 10-1 | 26 | 14 | 13 | 6 | 65.00% | 31.58% | 40 | 19 | TAIR8 |
Avg. embryo expression (dissected): '232.695' Avg. embryo expression (LCM): '151.256' |
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| AT1G62020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 28 | 13 | 68.29% | 41 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.84091 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62010 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.37186 x 10-1 | 4 | 3 | 0 | 2 | 57.14% | 100.00% | 7 | 2 | TAIR8 |
Avg. embryo expression (dissected): '25.9022' Avg. embryo expression (LCM): '49.1292' |
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| AT1G62010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 1 | 8 | 13 | 66.67% | 61.90% | 3 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.78917' Avg. expression score for this sample: '15.6541' Avg. expression score in LCM sample: '6.49648' Tissue used: 'full endosperm' |
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| AT1G62010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 2 | 2 | 50.00% | 50.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.78917' Avg. expression score for this sample: '7.97604' Avg. expression score in LCM sample: '6.49648' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62010 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.84091 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.7506 x 10-2 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 11845 | 7176 | 62.27% | 19021 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.3 x 10-9 | 28 | 2 | 13 | 71 | 93.33% | 84.52% | 30 | 84 | TAIR8 |
Avg. embryo expression (dissected): '359.282' Avg. embryo expression (LCM): '0' |
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| AT1G62000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 652 | 511 | 56.06% | 1163 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 2939 | 17 | 99.42% | 2956 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.9 x 10-16 | 167 | 3 | 312 | 1059 | 98.24% | 77.24% | 170 | 1371 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1705.91' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 2383 | 13 | 1993 | 3655 | 99.46% | 64.71% | 2396 | 5648 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '3358.28' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G61990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.54709 x 10-1 | 20 | 7 | 14 | 27 | 74.07% | 65.85% | 27 | 41 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '19.6846' Avg. expression score in LCM sample: '11.0381' Tissue used: 'full endosperm' |
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| AT1G61990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 37 | 10 | 16 | 11 | 78.72% | 40.74% | 47 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '21.4637' Avg. expression score in LCM sample: '11.0381' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G61990 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.13 x 10-4 | 92 | 15 | 85.98% | 107 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G61990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.64006 x 10-1 | 52 | 39 | 57.14% | 91 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G61990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.02256 x 10-1 | 2 | 2 | 50.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G61990 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.52647 x 10-1 | 65 | 50 | 7 | 5 | 56.52% | 41.67% | 115 | 12 | TAIR8 |
Avg. embryo expression (dissected): '64.4072' Avg. embryo expression (LCM): '59.5277' |
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| AT1G61980 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.40541 x 10-1 | 23 | 11 | 2 | 1 | 67.65% | 33.33% | 34 | 3 | TAIR8 |
Avg. embryo expression (dissected): '28.0063' Avg. embryo expression (LCM): '43.955' |
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| AT1G61980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.8122 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G61980 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.77755 x 10-1 | 96 | 13 | 88.07% | 109 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G61980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.66355 x 10-1 | 12 | 2 | 5 | 8 | 85.71% | 61.54% | 14 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034873' Avg. expression score for this sample: '14.0439' Avg. expression score in LCM sample: '26.6767' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G61980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.033 | 38 | 3 | 9 | 21 | 92.68% | 70.00% | 41 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034873' Avg. expression score for this sample: '26.0212' Avg. expression score in LCM sample: '26.6767' Tissue used: 'full endosperm' |
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| AT1G61980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.917 x 10-3 | 56 | 34 | 62.22% | 90 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G61970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.70434 x 10-1 | 35 | 10 | 77.78% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G61970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.65517 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G61970 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 2 | 1 | 1 | 66.67% | 50.00% | 6 | 2 | TAIR8 |
Avg. embryo expression (dissected): '26.6579' Avg. embryo expression (LCM): '19.5537' |
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| AT1G61970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.84078 x 10-1 | 8 | 1 | 3 | 9 | 88.89% | 75.00% | 9 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.355036' Avg. expression score for this sample: '66.1463' Avg. expression score in LCM sample: '16.638' Tissue used: 'full endosperm' |
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| AT1G61970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 0 | 1 | 1 | 100.00% | 50.00% | 5 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.355036' Avg. expression score for this sample: '32.8152' Avg. expression score in LCM sample: '16.638' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G61970 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 20 | 5 | 80.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G61960 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.2233 x 10-2 | 22 | 1 | 95.65% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G61960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.764484' Avg. expression score for this sample: '5.04976' Avg. expression score in LCM sample: '3.48341' Tissue used: 'pure endosperm, no chalazal' |