| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G62410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '13.1416' Avg. expression score in LCM sample: '4.39468' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62410 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '6.70155' Avg. expression score in LCM sample: '4.39468' Tissue used: 'full endosperm' |
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| AT1G62410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62400 | HT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62400 | HT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 2 | 1 | 5 | 0.00% | 83.33% | 2 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '8.54587' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62400 | HT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.7194' Avg. embryo expression (LCM): '0' |
|||||
| AT1G62400 | HT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62400 | HT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.21242' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT1G62400 | HT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62390 | Phox2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.664 x 10-3 | 93 | 20 | 82.30% | 113 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62390 | Phox2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.99624 x 10-1 | 55 | 20 | 29 | 71 | 73.33% | 71.00% | 75 | 100 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.783034' Avg. expression score for this sample: '930.994' Avg. expression score in LCM sample: '335.553' Tissue used: 'full endosperm' |
||||
| AT1G62390 | Phox2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.79472 x 10-1 | 55 | 20 | 73.33% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62390 | Phox2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 17 | 7 | 70.83% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62390 | Phox2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.46387 x 10-1 | 28 | 22 | 15 | 30 | 56.00% | 66.67% | 50 | 45 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.783034' Avg. expression score for this sample: '711.914' Avg. expression score in LCM sample: '335.553' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62390 | Phox2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.69203 x 10-1 | 83 | 59 | 17 | 21 | 58.45% | 55.26% | 142 | 38 | TAIR8 |
Avg. embryo expression (dissected): '2275.06' Avg. embryo expression (LCM): '2456.77' |
|||
| AT1G62380 | ACO2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.2 x 10-7 | 206 | 96 | 13 | 32 | 68.21% | 71.11% | 302 | 45 | TAIR8 |
Avg. embryo expression (dissected): '122.886' Avg. embryo expression (LCM): '78.3655' |
|||
| AT1G62380 | ACO2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.50905 x 10-1 | 755 | 6 | 99.21% | 761 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62380 | ACO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 930 | 11 | 14 | 364 | 98.83% | 96.30% | 941 | 378 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '338.399' Avg. expression score in LCM sample: '12.3022' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G62380 | ACO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 12206 | 54 | 69 | 8229 | 99.56% | 99.17% | 12260 | 8298 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '3525.61' Avg. expression score in LCM sample: '12.3022' Tissue used: 'full endosperm' |
||||
| AT1G62380 | ACO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.172 x 10-3 | 8644 | 32 | 99.63% | 8676 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62380 | ACO2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.383 x 10-3 | 2810 | 6 | 99.79% | 2816 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.83 x 10-4 | 28 | 0 | 100.00% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 91 | 40 | 35 | 56 | 69.47% | 61.54% | 131 | 91 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01664' Avg. expression score for this sample: '279.565' Avg. expression score in LCM sample: '126.872' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G62370 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.373 x 10-2 | 11 | 0 | 0 | 0 | 100.00% | 11 | 0 | TAIR8 |
Avg. embryo expression (dissected): '20.514' Avg. embryo expression (LCM): '14.3168' |
|||||
| AT1G62370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.99282 x 10-1 | 23 | 5 | 82.14% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62370 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.54 x 10-4 | 49 | 3 | 94.23% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.6 x 10-5 | 64 | 10 | 18 | 90 | 86.49% | 83.33% | 74 | 108 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01664' Avg. expression score for this sample: '233.155' Avg. expression score in LCM sample: '126.872' Tissue used: 'full endosperm' |
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| AT1G62360 | STM | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 2 | 100.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.625049' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT1G62360 | STM | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62360 | STM | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62360 | STM | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62360 | STM | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.25269' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62360 | STM | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 2 | 0 | 1 | 0.00% | 100.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '9.29573' Avg. embryo expression (LCM): '12.0186' |
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| AT1G62355 | MIR413 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT1G62355 | MIR413 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62355 | MIR413 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62355 | MIR413 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62355 | MIR413 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G62355 | MIR413 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.56985 x 10-1 | 12 | 10 | 54.55% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.05556 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 7 | 3 | 3 | 0 | 70.00% | 0.00% | 10 | 3 | TAIR8 |
Avg. embryo expression (dissected): '9.21366' Avg. embryo expression (LCM): '6.39232' |
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| AT1G62350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 12 | 2 | 8 | 6 | 85.71% | 42.86% | 14 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.797226' Avg. expression score for this sample: '10.3764' Avg. expression score in LCM sample: '4.99729' Tissue used: 'full endosperm' |
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| AT1G62350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2362 x 10-2 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.30769 x 10-1 | 6 | 0 | 0 | 1 | 100.00% | 100.00% | 6 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.797226' Avg. expression score for this sample: '3.05431' Avg. expression score in LCM sample: '4.99729' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62340 | ALE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.34396 x 10-1 | 1844 | 895 | 1245 | 2336 | 67.32% | 65.23% | 2739 | 3581 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.309878' Avg. expression score for this sample: '687.705' Avg. expression score in LCM sample: '1029.87' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62340 | ALE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.61069 x 10-1 | 487 | 364 | 524 | 1194 | 57.23% | 69.50% | 851 | 1718 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.309878' Avg. expression score for this sample: '195.265' Avg. expression score in LCM sample: '1029.87' Tissue used: 'full endosperm' |
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| AT1G62340 | ALE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.0209 x 10-2 | 124 | 42 | 74.70% | 166 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62340 | ALE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.42073 x 10-1 | 148 | 85 | 63.52% | 233 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62340 | ALE1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.28 x 10-4 | 94 | 48 | 44 | 79 | 66.20% | 64.23% | 142 | 123 | TAIR8 |
Avg. embryo expression (dissected): '57.2241' Avg. embryo expression (LCM): '15.7861' |
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| AT1G62340 | ALE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.6693 x 10-2 | 176 | 68 | 72.13% | 244 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62333 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 250 | 3 | 98.81% | 253 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62333 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.37524 x 10-1 | 14 | 7 | 0 | 2 | 66.67% | 100.00% | 21 | 2 | TAIR8 |
Avg. embryo expression (dissected): '41.6578' Avg. embryo expression (LCM): '0' |
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| AT1G62333 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.00879 x 10-1 | 162 | 1 | 99.39% | 163 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62333 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.6 x 10-22 | 120 | 3 | 0 | 106 | 97.56% | 100.00% | 123 | 106 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '351.6' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62333 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 286 | 5 | 2 | 270 | 98.28% | 99.26% | 291 | 272 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '667.445' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G62333 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.0002 x 10-1 | 167 | 1 | 99.40% | 168 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.46593 x 10-1 | 7 | 4 | 63.64% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62330 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.7784 x 10-2 | 49 | 14 | 11 | 1 | 77.78% | 8.33% | 63 | 12 | TAIR8 |
Avg. embryo expression (dissected): '45.9984' Avg. embryo expression (LCM): '52.3065' |
||||
| AT1G62330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.8379 x 10-2 | 14 | 15 | 48.28% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.62147 x 10-1 | 125 | 21 | 54 | 47 | 85.62% | 46.53% | 146 | 101 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.559176' Avg. expression score for this sample: '66.0982' Avg. expression score in LCM sample: '50.3257' Tissue used: 'full endosperm' |
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| AT1G62330 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-9 | 60 | 0 | 100.00% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.11253 x 10-1 | 87 | 16 | 43 | 36 | 84.47% | 45.57% | 103 | 79 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.559176' Avg. expression score for this sample: '79.6151' Avg. expression score in LCM sample: '50.3257' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.566562' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.24784' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G62320 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62320 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.323809' Avg. embryo expression (LCM): '0' |
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| AT1G62310 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.07699 x 10-1 | 149 | 165 | 74 | 68 | 47.45% | 47.89% | 314 | 142 | TAIR8 |
Avg. embryo expression (dissected): '211.292' Avg. embryo expression (LCM): '65.5683' |
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| AT1G62310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-7 | 114 | 12 | 90.48% | 126 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62310 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 993 | 108 | 90.19% | 1101 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.26137 x 10-1 | 405 | 262 | 244 | 672 | 60.72% | 73.36% | 667 | 916 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000096' Avg. expression score for this sample: '411.09' Avg. expression score in LCM sample: '150.154' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.8 x 10-5 | 1026 | 485 | 324 | 1044 | 67.90% | 76.32% | 1511 | 1368 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000096' Avg. expression score for this sample: '563.36' Avg. expression score in LCM sample: '150.154' Tissue used: 'full endosperm' |
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| AT1G62310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.8 x 10-19 | 595 | 96 | 86.11% | 691 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62305 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.5767 x 10-2 | 36 | 21 | 63.16% | 57 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62305 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.5936 x 10-2 | 2 | 4 | 33.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62305 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.34842 x 10-1 | 5 | 1 | 1 | 2 | 83.33% | 66.67% | 6 | 3 | TAIR8 |
Avg. embryo expression (dissected): '9.00308' Avg. embryo expression (LCM): '5.90253' |
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| AT1G62305 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.03234 x 10-1 | 26 | 3 | 9 | 24 | 89.66% | 72.73% | 29 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.057829' Avg. expression score for this sample: '16.1654' Avg. expression score in LCM sample: '2.95428' Tissue used: 'full endosperm' |
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| AT1G62305 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-5 | 91 | 1 | 98.91% | 92 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62305 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.33718 x 10-1 | 9 | 2 | 3 | 7 | 81.82% | 70.00% | 11 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.057829' Avg. expression score for this sample: '10.0526' Avg. expression score in LCM sample: '2.95428' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62301 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62301 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G62301 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62301 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62301 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G62301 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G62300 | WRKY6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.54929 x 10-1 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62300 | WRKY6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 2 | 0 | 0.00% | 0 | 2 | TAIR8 |
Avg. embryo expression (dissected): '.750437' Avg. embryo expression (LCM): '0' |
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| AT1G62300 | WRKY6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.92982 x 10-1 | 18 | 3 | 85.71% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62300 | WRKY6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 6 | 5 | 12 | 57.14% | 70.59% | 14 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.408913' Avg. expression score for this sample: '9.92953' Avg. expression score in LCM sample: '.734896' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G62300 | WRKY6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.06248 x 10-1 | 16 | 11 | 1 | 29 | 59.26% | 96.67% | 27 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.408913' Avg. expression score for this sample: '15.9364' Avg. expression score in LCM sample: '.734896' Tissue used: 'full endosperm' |
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| AT1G62300 | WRKY6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.30299 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G62290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62290 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.30814 x 10-1 | 129 | 95 | 45 | 36 | 57.59% | 44.44% | 224 | 81 | TAIR8 |
Avg. embryo expression (dissected): '984.018' Avg. embryo expression (LCM): '406.345' |
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| AT1G62290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 28 | 16 | 63.64% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.71852 x 10-1 | 121 | 46 | 63 | 79 | 72.46% | 55.63% | 167 | 142 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.376522' Avg. expression score for this sample: '1339.78' Avg. expression score in LCM sample: '31.7034' Tissue used: 'full endosperm' |
|||||
| AT1G62290 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.74486 x 10-1 | 12 | 3 | 80.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G62290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.00701 x 10-1 | 41 | 21 | 18 | 16 | 66.13% | 47.06% | 62 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.376522' Avg. expression score for this sample: '243.652' Avg. expression score in LCM sample: '31.7034' Tissue used: 'pure endosperm, no chalazal' |